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Conserved domains on  [gi|1972306777|ref|NP_001379836|]
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Collagen triple helix repeat protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 2.74e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 47.21  E-value: 2.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRvimvAGPAGPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARG 82
Cdd:NF038329  120 GEPGPAGPAGPAGEQGPRGDRGE----TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQG 195

                          90
                  ....*....|..
gi 1972306777  83 ERGPQGPQGLKG 94
Cdd:NF038329  196 PRGETGPAGEQG 207
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 2.74e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 47.21  E-value: 2.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRvimvAGPAGPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARG 82
Cdd:NF038329  120 GEPGPAGPAGPAGEQGPRGDRGE----TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQG 195

                          90
                  ....*....|..
gi 1972306777  83 ERGPQGPQGLKG 94
Cdd:NF038329  196 PRGETGPAGEQG 207
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 2-94 3.32e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 46.82  E-value: 3.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   2 PGPQGPTGRPGRPGPKGPKGEDGRVIMVAGPAGPAGPPGLPGTPGK----------------RGARGMDGLPGPQGAPGQ 65
Cdd:NF038329  170 AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDgeagpagedgpagpagDGQQGPDGDPGPTGEDGP 249

                          90       100
                  ....*....|....*....|....*....
gi 1972306777  66 QGDSGLSGPDGKEGARGERGPQGPQGLKG 94
Cdd:NF038329  250 QGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 4.41e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 46.44  E-value: 4.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRvimvAGPAGPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARG 82
Cdd:NF038329  248 GPQGPDGPAGKDGPRGDRGEAGP----DGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPG 323

                          90
                  ....*....|..
gi 1972306777  83 ERGPQGPQGLKG 94
Cdd:NF038329  324 KDGLPGKDGKDG 335
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 3.56e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 43.74  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRVIMVAGPAGPAGPPGLP----GTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKE 78
Cdd:NF038329  210 GPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPqgpdGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKD 289

                          90
                  ....*....|....*.
gi 1972306777  79 GARGERGPQGPQGLKG 94
Cdd:NF038329  290 GQNGKDGLPGKDGKDG 305
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 1.65e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.81  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRViMVAGPAGPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARG 82
Cdd:NF038329  138 GDRGETGPAGPAGPPGPQGERGEK-GPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDG 216

                          90
                  ....*....|..
gi 1972306777  83 ERGPQGPQGLKG 94
Cdd:NF038329  217 EAGPAGEDGPAG 228
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 2-90 3.46e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.04  E-value: 3.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   2 PGPQGPTGRPGRPGPKGPKGEDGRVIMVAGPA--GPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEG 79
Cdd:NF038329  256 AGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGkdGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335

                          90
                  ....*....|.
gi 1972306777  80 ARGERGPQGPQ 90
Cdd:NF038329  336 QPGKPAPKTPE 346
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 48-94 5.18e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 32.85  E-value: 5.18e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1972306777  48 RGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARGERGPQGPQGLKG 94
Cdd:pfam01391   9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
 
Name Accession Description Interval E-value
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 2.74e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 47.21  E-value: 2.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRvimvAGPAGPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARG 82
Cdd:NF038329  120 GEPGPAGPAGPAGEQGPRGDRGE----TGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQG 195

                          90
                  ....*....|..
gi 1972306777  83 ERGPQGPQGLKG 94
Cdd:NF038329  196 PRGETGPAGEQG 207
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 2-94 3.32e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 46.82  E-value: 3.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   2 PGPQGPTGRPGRPGPKGPKGEDGRVIMVAGPAGPAGPPGLPGTPGK----------------RGARGMDGLPGPQGAPGQ 65
Cdd:NF038329  170 AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDgeagpagedgpagpagDGQQGPDGDPGPTGEDGP 249

                          90       100
                  ....*....|....*....|....*....
gi 1972306777  66 QGDSGLSGPDGKEGARGERGPQGPQGLKG 94
Cdd:NF038329  250 QGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 4.41e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 46.44  E-value: 4.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRvimvAGPAGPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARG 82
Cdd:NF038329  248 GPQGPDGPAGKDGPRGDRGEAGP----DGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPG 323

                          90
                  ....*....|..
gi 1972306777  83 ERGPQGPQGLKG 94
Cdd:NF038329  324 KDGLPGKDGKDG 335
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 3.56e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 43.74  E-value: 3.56e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRVIMVAGPAGPAGPPGLP----GTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKE 78
Cdd:NF038329  210 GPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPqgpdGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKD 289

                          90
                  ....*....|....*.
gi 1972306777  79 GARGERGPQGPQGLKG 94
Cdd:NF038329  290 GQNGKDGLPGKDGKDG 305
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 3-94 1.65e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.81  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   3 GPQGPTGRPGRPGPKGPKGEDGRViMVAGPAGPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARG 82
Cdd:NF038329  138 GDRGETGPAGPAGPPGPQGERGEK-GPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDG 216

                          90
                  ....*....|..
gi 1972306777  83 ERGPQGPQGLKG 94
Cdd:NF038329  217 EAGPAGEDGPAG 228
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 2-90 3.46e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.04  E-value: 3.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1972306777   2 PGPQGPTGRPGRPGPKGPKGEDGRVIMVAGPA--GPAGPPGLPGTPGKRGARGMDGLPGPQGAPGQQGDSGLSGPDGKEG 79
Cdd:NF038329  256 AGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGkdGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335

                          90
                  ....*....|.
gi 1972306777  80 ARGERGPQGPQ 90
Cdd:NF038329  336 QPGKPAPKTPE 346
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 48-94 5.18e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 32.85  E-value: 5.18e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1972306777  48 RGARGMDGLPGPQGAPGQQGDSGLSGPDGKEGARGERGPQGPQGLKG 94
Cdd:pfam01391   9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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