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Conserved domains on  [gi|1972260378|ref|NP_001380016|]
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GST N-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

thioredoxin domain-containing protein( domain architecture ID 144)

thioredoxin domain-containing protein may function as a thiol disulfide oxidoreductase that catalyzes the oxidation or reduction of protein disulfide bonds using an active site dithiol, present in a CXXC motif

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Thioredoxin_like super family cl00388
Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin ...
81-123 4.14e-22

Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX)-like superfamily is a large, diverse group of proteins containing a TRX fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include the families of TRX, protein disulfide isomerase (PDI), tlpA, glutaredoxin, NrdH redoxin, and bacterial Dsb proteins (DsbA, DsbC, DsbG, DsbE, DsbDgamma). Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins, glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.


The actual alignment was detected with superfamily member cd03055:

Pssm-ID: 469754 [Multi-domain]  Cd Length: 89  Bit Score: 83.17  E-value: 4.14e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1972260378  81 NSPTLHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:cd03055     1 SSKHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIP 43
 
Name Accession Description Interval E-value
GST_N_Omega cd03055
GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
81-123 4.14e-22

GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega GST genes may be associated with the development of some types of cancer and the age-at-onset of both Alzheimer's and Parkinson's diseases.


Pssm-ID: 239353 [Multi-domain]  Cd Length: 89  Bit Score: 83.17  E-value: 4.14e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1972260378  81 NSPTLHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:cd03055     1 SSKHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIP 43
GST_N_3 pfam13417
Glutathione S-transferase, N-terminal domain;
101-123 9.11e-04

Glutathione S-transferase, N-terminal domain;


Pssm-ID: 433190 [Multi-domain]  Cd Length: 75  Bit Score: 35.28  E-value: 9.11e-04
                          10        20
                  ....*....|....*....|...
gi 1972260378 101 LYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:pfam13417   1 LYGFPGSPYARRVRIALNEKGLP 23
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
99-123 2.76e-03

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 35.64  E-value: 2.76e-03
                          10        20
                  ....*....|....*....|....*
gi 1972260378  99 YRLYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:COG0625     2 MKLYGSPPSPNSRRVRIALEEKGLP 26
 
Name Accession Description Interval E-value
GST_N_Omega cd03055
GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular ...
81-123 4.14e-22

GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega GST genes may be associated with the development of some types of cancer and the age-at-onset of both Alzheimer's and Parkinson's diseases.


Pssm-ID: 239353 [Multi-domain]  Cd Length: 89  Bit Score: 83.17  E-value: 4.14e-22
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1972260378  81 NSPTLHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:cd03055     1 SSKHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIP 43
GST_N_3 pfam13417
Glutathione S-transferase, N-terminal domain;
101-123 9.11e-04

Glutathione S-transferase, N-terminal domain;


Pssm-ID: 433190 [Multi-domain]  Cd Length: 75  Bit Score: 35.28  E-value: 9.11e-04
                          10        20
                  ....*....|....*....|...
gi 1972260378 101 LYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:pfam13417   1 LYGFPGSPYARRVRIALNEKGLP 23
GST_N_family cd00570
Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic ...
99-123 1.29e-03

Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Based on sequence similarity, different classes of GSTs have been identified, which display varying tissue distribution, substrate specificities and additional specific activities. In humans, GSTs display polymorphisms which may influence individual susceptibility to diseases such as cancer, arthritis, allergy and sclerosis. Some GST family members with non-GST functions include glutaredoxin 2, the CLIC subfamily of anion channels, prion protein Ure2p, crystallins, metaxin 2 and stringent starvation protein A.


Pssm-ID: 238319 [Multi-domain]  Cd Length: 71  Bit Score: 34.85  E-value: 1.29e-03
                          10        20
                  ....*....|....*....|....*
gi 1972260378  99 YRLYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:cd00570     1 LKLYYFPGSPRSLRVRLALEEKGLP 25
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
99-123 2.76e-03

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 35.64  E-value: 2.76e-03
                          10        20
                  ....*....|....*....|....*
gi 1972260378  99 YRLYSMRFCPYAQRVLIYLAKKNIP 123
Cdd:COG0625     2 MKLYGSPPSPNSRRVRIALEEKGLP 26
GST_N_2 pfam13409
Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.
106-123 3.88e-03

Glutathione S-transferase, N-terminal domain; This family is closely related to pfam02798.


Pssm-ID: 433184 [Multi-domain]  Cd Length: 68  Bit Score: 33.76  E-value: 3.88e-03
                          10
                  ....*....|....*...
gi 1972260378 106 FCPYAQRVLIYLAKKNIP 123
Cdd:pfam13409   1 FSPFSHRVRLALEEKGLP 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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