|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-435 |
1.52e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 117.03 E-value: 1.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektl 289
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIy 369
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748978 370 qtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 435
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-421 |
4.56e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 97.68 E-value: 4.56e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 226 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI--REKTLGKDHPAVAATLNNL 303
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 304 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 383
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLS 564
|
170 180 190
....*....|....*....|....*....|....*...
gi 2033748978 384 KNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVDD 421
Cdd:NF040586 565 ANNLARDLRELGRYAEALDLLEEALER-YREVLGGPDH 601
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-417 |
5.24e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 97.68 E-value: 5.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 212 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 289
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2033748978 370 QTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFG 417
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYER-YRRRFG 640
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-414 |
7.71e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 96.91 E-value: 7.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 289
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 -GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLnNLALLCQNQGKYEEVEYYYQRALE 367
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAAL-SLANDLRALGDADEARELAREVLD 675
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2033748978 368 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAEtlykEILTRAHER 414
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAR----ELAEAALEG 718
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
296-370 |
1.35e-19 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 83.21 E-value: 1.35e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033748978 296 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 370
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
227-417 |
2.76e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 92.29 E-value: 2.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 227 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 306
Cdd:NF040586 492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 307 YGKRGKYKEAEPLCKRALEIREKVL-GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 385
Cdd:NF040586 572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651
|
170 180 190
....*....|....*....|....*....|..
gi 2033748978 386 NLASCYLKQGKFKQAETLYKEILTRaHEREFG 417
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDR-YRRVLG 682
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-414 |
3.09e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.90 E-value: 3.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNiLALVYRDQNKYKDAANLLNDALA 283
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 284 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP---DVAKQL-NNLALLCQNQGKYEEVE 359
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2033748978 360 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 414
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRV 810
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-414 |
2.62e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 283
Cdd:NF040586 554 LGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYE 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 284 IREKTLGKDHP-AVAATLNnLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 362
Cdd:NF040586 634 RYRRRFGPDHPdTLAAALS-LANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELA 712
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2033748978 363 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA--ETLYKEILTRAHER 414
Cdd:NF040586 713 EAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAAlgEEALERLRRLLGED 766
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
211-405 |
6.22e-11 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 62.74 E-value: 6.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 211 ARLRTlhNLVIQYASQGRYEvavplckQALEDLEKTSGHDhPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektlg 290
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLE-------VAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 291 kdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvlGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyq 370
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 2033748978 371 tklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYK 405
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-338 |
3.24e-10 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 63.01 E-value: 3.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 218 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNiLALVYRDQNKYKDAanLLNDALAIREKTLGK----- 291
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVN-LANDLAALGDLDAA--LGEEALERLRRLLGEdlrag 770
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2033748978 292 -DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 338
Cdd:NF040586 771 pDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
306-420 |
7.50e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.70 E-value: 7.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 306 LYgKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV---------------------EY---- 360
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreldedtlerqrrvlglgedhPHtlmt 480
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748978 361 ------------YYQRALEI-------YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVD 420
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
35-149 |
8.91e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 8.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 35 LEALKNEHNSILQSLLET-LKCLKKDDESNLVEEKSNMIRKSLEMLELGLSEAQ-VMMALSNHLNAVESEKQKLRAQVRR 112
Cdd:TIGR02168 234 LEELREELEELQEELKEAeEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748978 113 LCQENQWLRDELANTQQKLQKSEQSVAQLEEEKKHLE 149
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-298 |
3.13e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 218 NLVIQYASQGRYEVAvpLCKQALEDLE------KTSGHDHPDV-ATMLNiLALVYRDQNKYKDAANLLNDALAIREKTLG 290
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRrllgedLRAGPDHPDTlACAAN-LALDLRATGRTEEAEELRADTLARLRRVLG 812
|
....*...
gi 2033748978 291 KDHPAVAA 298
Cdd:NF040586 813 PDHPDTVA 820
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
297-329 |
4.97e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 4.97e-04
10 20 30
....*....|....*....|....*....|...
gi 2033748978 297 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 329
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
29-161 |
6.54e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.93 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 29 KQVIQGLEALKNEHNSILQSLLETLkclkkDDESNLVEEKSNMIRKSLEMLElglSEAQVMMALSNHLNAV-ESEKQKLR 107
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLL-----MKELELLNSIKPKLRDRKDALE---EELRQLKQLEDELEDCdPTELDRAK 210
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2033748978 108 AQVRRLCQENQWLRDELANTQQKLQKSEQSVAQLEEEKkhLEFMNQLKKYDDDI 161
Cdd:smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK--SELNTEIAEAEKKL 262
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
295-416 |
1.23e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.18 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 295 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPdvAKQ---LNNLA----LLCQNQGKYEEVEYY------ 361
Cdd:cd24145 145 EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlvlMNNEAaelaLHALRKPLSSTLIEAsrlpqk 222
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2033748978 362 ------------YQRALEIYQTKLGPD-----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 416
Cdd:cd24145 223 srdqlleaalkwAQKALDVAKSIKPKDrdpecDQACALALYNLGVIAEMLGNLDEARKLYKEAISLAKELGF 294
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
22-149 |
4.25e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 22 DEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKK-DDESNLVEEKSNMIRKSLEMLELGLSEAQvmmalsNHLNAVE 100
Cdd:COG4372 34 RKALFELDKLQEELEQLREELEQAREELEQLEEELEQaRSELEQLEEELEELNEQLQAAQAELAQAQ------EELESLQ 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2033748978 101 SEKQKLRAQVRRLCQENQWLRDELANTQQKLQKSEQSVAQLEEEKKHLE 149
Cdd:COG4372 108 EEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELE 156
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-435 |
1.52e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 117.03 E-value: 1.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektl 289
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIy 369
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748978 370 qtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE 435
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
226-421 |
4.56e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 97.68 E-value: 4.56e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 226 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI--REKTLGKDHPAVAATLNNL 303
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 304 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 383
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLS 564
|
170 180 190
....*....|....*....|....*....|....*...
gi 2033748978 384 KNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVDD 421
Cdd:NF040586 565 ANNLARDLRELGRYAEALDLLEEALER-YREVLGGPDH 601
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
212-417 |
5.24e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 97.68 E-value: 5.24e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 212 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD--HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 289
Cdd:NF040586 433 TLRLRFHLANALRSLGRYEEARELDEDTLERQRRVLGLGedHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVF 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369
Cdd:NF040586 513 GEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERY 592
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2033748978 370 QTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFG 417
Cdd:NF040586 593 REVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYER-YRRRFG 640
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
210-414 |
7.71e-21 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 96.91 E-value: 7.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 289
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 -GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-VAKQLnNLALLCQNQGKYEEVEYYYQRALE 367
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAAL-SLANDLRALGDADEARELAREVLD 675
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2033748978 368 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAEtlykEILTRAHER 414
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAR----ELAEAALEG 718
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
208-411 |
2.85e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 95.06 E-value: 2.85e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 208 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKtsGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIrek 287
Cdd:COG3914 33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAA--AAALLLLAALLELAALLLQALGRYEEALALYRRALAL--- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 288 tlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 367
Cdd:COG3914 108 -----NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2033748978 368 IyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 411
Cdd:COG3914 175 L--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
296-370 |
1.35e-19 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 83.21 E-value: 1.35e-19
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033748978 296 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 370
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
227-417 |
2.76e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 92.29 E-value: 2.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 227 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVL 306
Cdd:NF040586 492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 307 YGKRGKYKEAEPLCKRALEIREKVL-GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 385
Cdd:NF040586 572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651
|
170 180 190
....*....|....*....|....*....|..
gi 2033748978 386 NLASCYLKQGKFKQAETLYKEILTRaHEREFG 417
Cdd:NF040586 652 SLANDLRALGDADEARELAREVLDR-YRRVLG 682
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-414 |
3.09e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.90 E-value: 3.09e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD-VATMLNiLALVYRDQNKYKDAANLLNDALA 283
Cdd:NF040586 597 GGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLD 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 284 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP---DVAKQL-NNLALLCQNQGKYEEVE 359
Cdd:NF040586 676 RYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEA 755
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2033748978 360 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 414
Cdd:NF040586 756 LERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRV 810
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
205-414 |
2.62e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.21 E-value: 2.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 205 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 283
Cdd:NF040586 554 LGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYE 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 284 IREKTLGKDHP-AVAATLNnLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY 362
Cdd:NF040586 634 RYRRRFGPDHPdTLAAALS-LANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELA 712
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2033748978 363 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA--ETLYKEILTRAHER 414
Cdd:NF040586 713 EAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAAlgEEALERLRRLLGED 766
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
253-329 |
8.10e-18 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 78.20 E-value: 8.10e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033748978 253 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 329
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
210-413 |
4.30e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.70 E-value: 4.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektl 289
Cdd:COG2956 73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLE--------LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIy 369
Cdd:COG2956 140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ- 207
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2033748978 370 qtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 413
Cdd:COG2956 208 -------DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
223-413 |
1.01e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.85 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 223 YASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTlgkdhpavAATLNN 302
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDD--------AEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 303 LAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAK 382
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180 190
....*....|....*....|....*....|.
gi 2033748978 383 TKNNLASCYLKQGKFKQAETLYKEILTRAHE 413
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPD 210
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
337-411 |
2.75e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 70.88 E-value: 2.75e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2033748978 337 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 411
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
212-287 |
3.65e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 70.49 E-value: 3.65e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748978 212 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 287
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
296-337 |
2.41e-14 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 67.14 E-value: 2.41e-14
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2033748978 296 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 337
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
211-369 |
2.73e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 2.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 211 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektlg 290
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748978 291 kdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvLGKDHPDVakqLNNLALLCQNQGKYEEVEYYYQRALEIY 369
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
261-413 |
5.07e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.45 E-value: 5.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 261 LALVYRDQNKYKDAANLLNDALairektlgKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAK 340
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2033748978 341 QLNNLALLCQNQGKYEEVEYYYQRALeiyqtKLGPDDPNVAktkNNLASCYLKQGKFKQAETLYKEILTRAHE 413
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKAL-----KLDPEHPEAY---LRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
222-414 |
2.68e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.72 E-value: 2.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 222 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY-KDAANLLNDALAIREKTLGKDHPAVAATL 300
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALaEAAAAALLALAAGEAAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 301 NNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNV 380
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDF 145
|
170 180 190
....*....|....*....|....*....|....
gi 2033748978 381 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 414
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
249-411 |
6.63e-13 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 66.52 E-value: 6.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 249 HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIre 328
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 329 kvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 408
Cdd:COG5010 84 ------DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRAL 149
|
...
gi 2033748978 409 TRA 411
Cdd:COG5010 150 GTS 152
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
218-408 |
1.98e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.86 E-value: 1.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 218 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRektlgkdhPAVA 297
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 298 ATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEiyqtkLGPDD 377
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALE-----LDPND 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2033748978 378 P-------------NVAKTKNNL----ASCYLKQGKFKQAETLYKEIL 408
Cdd:COG4785 175 PeralwlylaerklDPEKALALLledwATAYLLQGDTEEARELFKLAL 222
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
306-408 |
2.89e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.88 E-value: 2.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 306 LYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYyQRALEIyqtklgpdDPNVAKTKN 385
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|...
gi 2033748978 386 NLASCYLKQGKFKQAETLYKEIL 408
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERAL 86
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
260-415 |
8.62e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.91 E-value: 8.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 260 ILALVYRDQNKYKDAANLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVA 339
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748978 340 KQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 415
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENA 144
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
210-370 |
1.17e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.03 E-value: 1.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRektl 289
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALEL--------DPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 gkdhPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
.
gi 2033748978 370 Q 370
Cdd:COG0457 217 A 217
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
264-368 |
2.09e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.57 E-value: 2.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 264 VYRDQNKYKDAANLLNDALAIrektlgkdHPAVAATLNNLAVLYGKRGKYKEAEPLcKRALEIrekvlgkdHPDVAKQLN 343
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*
gi 2033748978 344 NLALLCQNQGKYEEVEYYYQRALEI 368
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALEL 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
295-411 |
3.23e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.36 E-value: 3.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 295 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYqtklg 374
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748978 375 PDDPNVAktkNNLASCYLKQGKFKQAETLYKEILTRA 411
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKALKLD 102
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
210-368 |
3.46e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.90 E-value: 3.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektl 289
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748978 290 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 368
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
211-405 |
6.22e-11 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 62.74 E-value: 6.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 211 ARLRTlhNLVIQYASQGRYEvavplckQALEDLEKTSGHDhPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektlg 290
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLE-------VAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 291 kdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvlGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyq 370
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190
....*....|....*....|....*....|....*
gi 2033748978 371 tklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYK 405
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLE 193
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
254-294 |
2.28e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 55.97 E-value: 2.28e-10
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2033748978 254 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 294
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
238-388 |
2.53e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.48 E-value: 2.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 238 QALEDLEKTSGHDHPDVATMLNiLALVYRDQNKYKDAANLLNDALAIRektlgkdhPAVAATLNNLAVLYGKRGKYKEAE 317
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLL-LGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAE 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2033748978 318 PLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEiyqtkLGPDDPNVAKTKNNLA 388
Cdd:COG4235 72 ELLERALAL--------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA-----LLPADAPARLLEASIA 129
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-338 |
3.24e-10 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 63.01 E-value: 3.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 218 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNiLALVYRDQNKYKDAanLLNDALAIREKTLGK----- 291
Cdd:NF040586 694 NLAVLLRALGDPEEARELAEAALEGLRERLGPDHPyTLAAAVN-LANDLAALGDLDAA--LGEEALERLRRLLGEdlrag 770
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 2033748978 292 -DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 338
Cdd:NF040586 771 pDHPDTLACAANLALDLRATGRTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
291-411 |
7.34e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.32 E-value: 7.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 291 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyq 370
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL-- 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2033748978 371 tklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 411
Cdd:COG4235 81 ------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
223-331 |
8.15e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 8.15e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 223 YASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAANLlNDALAIrektlgkdHPAVAATLNN 302
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 2033748978 303 LAVLYGKRGKYKEAEPLCKRALEIREKVL 331
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
210-369 |
3.50e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.20 E-value: 3.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektl 289
Cdd:COG2956 141 PENAHAYCELAELYLEQGDYDEAIEALEKALK--------LDPDCARALLLLAELYLEQGDYEEAIAALERALEQ----- 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvlgkdHPDVAkQLNNLALLCQNQGKYEEVEYYYQRALEIY 369
Cdd:COG2956 208 ---DPDYLPALPRLAELYEKLGDPEEALELLRKALEL--------DPSDD-LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
261-480 |
7.21e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.47 E-value: 7.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 261 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKdHPDVAK 340
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAA-LLLLAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 341 QLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAETLYKEILtraherefgSVD 420
Cdd:COG3914 80 LLELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRAL---------ALN 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 421 DENKPIWM----------HAEEREECkgkqkdgtsfgeyggWYKACKVDsPTVTTTLKNLGALYRRQGKF 480
Cdd:COG3914 143 PDFAEAYLnlgealrrlgRLEEAIAA---------------LRRALELD-PDNAEALNNLGNALQDLGRL 196
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
261-434 |
8.64e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.08 E-value: 8.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 261 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRekvlgkdhPDVAK 340
Cdd:COG4785 37 LAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 341 QLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGKFKQAEtlykEILTRAHerEFGSVD 420
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYYLGRYELAI----ADLEKAL--ELDPND 174
|
170
....*....|....
gi 2033748978 421 DENkPIWMHAEERE 434
Cdd:COG4785 175 PER-ALWLYLAERK 187
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
309-410 |
1.95e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.69 E-value: 1.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 309 KRGKYKEAEPLCKRALEirekvLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYqtklgPDDPNVAKTKNNLA 388
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74
|
90 100
....*....|....*....|..
gi 2033748978 389 SCYLKQGKFKQAETLYKEILTR 410
Cdd:COG1729 75 LSYLELGDYDKARATLEELIKK 96
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
250-409 |
6.40e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.86 E-value: 6.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALairektlgKDHPAVAATLNNLAVLYGKRgKYKEAEPLCKRALEIRek 329
Cdd:TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYQTVV--------KKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKLA-- 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 330 vlgkdhPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklGPDDPNVaktKNNLASCYLKQGKFKQAETLYKEILT 409
Cdd:TIGR02917 834 ------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI-----APEAAAI---RYHLALALLATGRKAEARKELDKLLN 899
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
306-420 |
7.50e-08 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 55.70 E-value: 7.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 306 LYgKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV---------------------EY---- 360
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAreldedtlerqrrvlglgedhPHtlmt 480
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748978 361 ------------YYQRALEI-------YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFGSVD 420
Cdd:NF040586 481 agglgadlralgRFREALELdeetlerHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR-RRRVLGPDH 558
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
210-367 |
1.85e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDlektsghdHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRektl 289
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD---- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 290 gkdhPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----------VLGKDHPDVAKQL--NNLALLCQNQGKYEE 357
Cdd:COG4785 138 ----PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEE 213
|
170
....*....|
gi 2033748978 358 VEYYYQRALE 367
Cdd:COG4785 214 ARELFKLALA 223
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
338-379 |
3.15e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 47.11 E-value: 3.15e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2033748978 338 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 379
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
237-411 |
3.41e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.55 E-value: 3.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 237 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLgkdhPAVAAtlnnLAVLYGKRGKYKEA 316
Cdd:TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL----YAKLG----LAQLALAENRFDEA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 317 EPLCKRALEIrekvlgkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIyqtklgpdDPNVAKTKNNLASCYLKQGK 396
Cdd:TIGR02917 179 RALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL--------RPNNIAVLLALATILIEAGE 242
|
170
....*....|....*
gi 2033748978 397 FKQAETLYKEILTRA 411
Cdd:TIGR02917 243 FEEAEKHADALLKKA 257
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
213-253 |
4.32e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 46.73 E-value: 4.32e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2033748978 213 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD 253
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
210-326 |
6.26e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.03 E-value: 6.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdlektsghDHPDVATMLNILALVYRDQNKYKDAANLLNDALAirektL 289
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748978 290 GKDHPAVaatLNNLAVLYGKRGKYKEAEPLCKRALEI 326
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
210-326 |
1.78e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.31 E-value: 1.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEdLEktsghdhPDVATMLNILALVYRDQNKYKDAANLLNDALAIrektl 289
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALR-LD-------PDNADALLDLAEALLAAGDTEEAEELLERALAL----- 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748978 290 gkdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 326
Cdd:COG4235 81 ---DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
261-326 |
2.49e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 45.40 E-value: 2.49e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2033748978 261 LALVYRDQNKYKDAANLLNDALAirektLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 326
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
265-389 |
3.22e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.14 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 265 YRDQNKYKDAANLLNDALAirektLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEirekvLGKDHPDVAKQLNN 344
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2033748978 345 LALLCQNQGKYEEVEYYYQRALEIYqtklgPDDPNVAKTKNNLAS 389
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
321-413 |
9.17e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 9.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 321 KRALEIREKVlgKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEiyqtkLGPDDPNVaktKNNLASCYLKQGKFKQA 400
Cdd:COG4235 1 EAIARLRQAL--AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR-----LDPDNADA---LLDLAEALLAAGDTEEA 70
|
90
....*....|...
gi 2033748978 401 ETLYKEILTRAHE 413
Cdd:COG4235 71 EELLERALALDPD 83
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
35-149 |
8.91e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 8.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 35 LEALKNEHNSILQSLLET-LKCLKKDDESNLVEEKSNMIRKSLEMLELGLSEAQ-VMMALSNHLNAVESEKQKLRAQVRR 112
Cdd:TIGR02168 234 LEELREELEELQEELKEAeEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 2033748978 113 LCQENQWLRDELANTQQKLQKSEQSVAQLEEEKKHLE 149
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
297-329 |
9.33e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 9.33e-05
10 20 30
....*....|....*....|....*....|...
gi 2033748978 297 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 329
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
339-371 |
1.42e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.33 E-value: 1.42e-04
10 20 30
....*....|....*....|....*....|...
gi 2033748978 339 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 371
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
299-334 |
1.47e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.06 E-value: 1.47e-04
10 20 30
....*....|....*....|....*....|....*.
gi 2033748978 299 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 334
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
302-378 |
1.92e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 40.01 E-value: 1.92e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2033748978 302 NLAVLYGKRGKYKEAEPLCKRALEirekvLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYqtklgPDDP 378
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA-----PGDP 68
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
218-298 |
3.13e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 218 NLVIQYASQGRYEVAvpLCKQALEDLE------KTSGHDHPDV-ATMLNiLALVYRDQNKYKDAANLLNDALAIREKTLG 290
Cdd:NF040586 736 NLANDLAALGDLDAA--LGEEALERLRrllgedLRAGPDHPDTlACAAN-LALDLRATGRTEEAEELRADTLARLRRVLG 812
|
....*...
gi 2033748978 291 KDHPAVAA 298
Cdd:NF040586 813 PDHPDTVA 820
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
223-284 |
3.50e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 39.24 E-value: 3.50e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2033748978 223 YASQGRYEVAVPLCKQALEdlektSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 284
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
297-329 |
4.97e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 4.97e-04
10 20 30
....*....|....*....|....*....|...
gi 2033748978 297 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 329
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
29-161 |
6.54e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.93 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 29 KQVIQGLEALKNEHNSILQSLLETLkclkkDDESNLVEEKSNMIRKSLEMLElglSEAQVMMALSNHLNAV-ESEKQKLR 107
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLL-----MKELELLNSIKPKLRDRKDALE---EELRQLKQLEDELEDCdPTELDRAK 210
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2033748978 108 AQVRRLCQENQWLRDELANTQQKLQKSEQSVAQLEEEKkhLEFMNQLKKYDDDI 161
Cdd:smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKK--SELNTEIAEAEKKL 262
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
210-289 |
6.57e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.00 E-value: 6.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 210 PARLRTLHNLVIQYASQGRYEVAVPLcKQALEdlektsghDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 289
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALK--------LDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
295-416 |
1.23e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.18 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 295 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPdvAKQ---LNNLA----LLCQNQGKYEEVEYY------ 361
Cdd:cd24145 145 EVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlvlMNNEAaelaLHALRKPLSSTLIEAsrlpqk 222
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2033748978 362 ------------YQRALEIYQTKLGPD-----DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 416
Cdd:cd24145 223 srdqlleaalkwAQKALDVAKSIKPKDrdpecDQACALALYNLGVIAEMLGNLDEARKLYKEAISLAKELGF 294
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
339-371 |
1.93e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 1.93e-03
10 20 30
....*....|....*....|....*....|...
gi 2033748978 339 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 371
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
223-428 |
2.31e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 40.37 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 223 YASQGRYEVAVPLCKQALEDLEK------------------------------------TSGHDHPDVATM-LNILALVY 265
Cdd:pfam17874 11 AISKGDAERALELAEQALALLPEddllarglatfvlgeaylclgdldaalqamreaealARRADSPHVTLWaLLQQGEIL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 266 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVlgkdHPDVAKQLN-N 344
Cdd:pfam17874 91 RAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQW----EPDAAVDAYvL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 345 LALLCQNQGKYEEVEYYYQRALEIYQTK----------------------------------LGPDDPN---VAKTKNNL 387
Cdd:pfam17874 167 LARIALAQGELEEALTLLRRAELLARQSffhvdwlanaervrvrlwlargdlraavrwlraaEPPSDADnhfLERELRNL 246
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2033748978 388 ASCYLKQGKFKQAETLYKEILTRAheREFGSVDDENKpIWM 428
Cdd:pfam17874 247 ARVLLALGRFDDALSLLERLQNLA--EQLGRVRSLIE-NLI 284
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
352-408 |
3.37e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.41 E-value: 3.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2033748978 352 QGKYEEVEYYYQRALEIYqtklgPDDPNVaktKNNLASCYLKQGKFKQAETLYKEIL 408
Cdd:pfam14559 1 EGDYAEALELLEQALAED-----PDNAEA---RLGLAEALLALGRLDEAEALLAALP 49
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
380-417 |
4.14e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 35.17 E-value: 4.14e-03
10 20 30
....*....|....*....|....*....|....*...
gi 2033748978 380 VAKTKNNLASCYLKQGKFKQAETLYKEILTRaHEREFG 417
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAI-RERVLG 37
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
380-480 |
4.23e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.21 E-value: 4.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 380 VAKTKNNLASCYLKQGKFKQAETLYKEILTRAhEREFGSvddenkpiwmhaeereeckgkqkdgtsfgeyggwykackvD 459
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIA-RRLLGP----------------------------------------D 40
|
90 100
....*....|....*....|.
gi 2033748978 460 SPTVTTTLKNLGALYRRQGKF 480
Cdd:pfam13424 41 HPLTATTLLNLGRLYLELGRY 61
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
22-149 |
4.25e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 22 DEIISKTKQVIQGLEALKNEHNSILQSLLETLKCLKK-DDESNLVEEKSNMIRKSLEMLELGLSEAQvmmalsNHLNAVE 100
Cdd:COG4372 34 RKALFELDKLQEELEQLREELEQAREELEQLEEELEQaRSELEQLEEELEELNEQLQAAQAELAQAQ------EELESLQ 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2033748978 101 SEKQKLRAQVRRLCQENQWLRDELANTQQKLQKSEQSVAQLEEEKKHLE 149
Cdd:COG4372 108 EEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELE 156
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
221-316 |
4.75e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.28 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 221 IQYASQGRYEVAVPLCKQALEDLEktsghDHPDVATMLNILALVYRDQNKYKDAANLLNDALairekTLGKDHPAVAATL 300
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYP-----NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLL-----KRYPDSPKAPDAL 70
|
90
....*....|....*.
gi 2033748978 301 NNLAVLYGKRGKYKEA 316
Cdd:COG1729 71 LKLGLSYLELGDYDKA 86
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
339-369 |
4.85e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.81 E-value: 4.85e-03
10 20 30
....*....|....*....|....*....|.
gi 2033748978 339 AKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
252-371 |
6.09e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 39.58 E-value: 6.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 252 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKdHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIrekvl 331
Cdd:TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM-YMNVLPLINKALALFQWKQDFIEAENLCEKALII----- 537
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2033748978 332 gkdHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 371
Cdd:TIGR00990 538 ---DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
255-413 |
6.86e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.12 E-value: 6.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2033748978 255 ATMLNILALVYRDQNKYKDAANLLNDALairektlgKDHPAVAatlnnLAVLYGkRGKYKEAEPLCKRAleirEKVLgKD 334
Cdd:COG3071 193 PELAAAYARALIALGDHDEAERLLREAL--------KRQWDPR-----LVRLYG-RLQGGDPAKQLKRA----EKWL-KK 253
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2033748978 335 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALeiyqtKLGPDdpnvAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 413
Cdd:COG3071 254 HPNDPDLLLALGRLCLRNQLWGKAREYLEAAL-----ALRPS----AEAYAELARLLEQLGDPEEAAEHYRKALALALG 323
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
344-411 |
7.10e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.39 E-value: 7.10e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2033748978 344 NLALLCQNQGKYEEVEYYYQRALeiyqtKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 411
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAAL-----ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| |
