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Conserved domains on  [gi|2048774915|ref|NP_001382062|]
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iroquois-class homeodomain protein IRX-3 [Rattus norvegicus]

Protein Classification

iroquois-class homeodomain protein( domain architecture ID 11160563)

iroquois-class homeodomain protein plays numerous roles in early embryo patterning

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 149-187 8.97e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


:

Pssm-ID: 428673  Cd Length: 39  Bit Score: 73.70  E-value: 8.97e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2048774915 149 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 187
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
IRO smart00548
Motif in Iroquois-class homeodomain proteins (only). Unknown function;
345-362 2.16e-03

Motif in Iroquois-class homeodomain proteins (only). Unknown function;


:

Pssm-ID: 214716  Cd Length: 18  Bit Score: 35.63  E-value: 2.16e-03
                           10
                   ....*....|....*...
gi 2048774915  345 STLQKPKIWSLAETATSP 362
Cdd:smart00548   1 SPAAKPKIWSLADTATSS 18
 
Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 149-187 8.97e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 73.70  E-value: 8.97e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2048774915 149 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 187
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 138-192 2.36e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 61.88  E-value: 2.36e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2048774915 138 TRESTSTLKAWLNehrKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 192
Cdd:cd00086     8 TPEQLEELEKEFE---KNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 138-189 5.84e-11

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 57.65  E-value: 5.84e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2048774915  138 TRESTSTLKAWLNehrKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 189
Cdd:smart00389   9 TPEQLEELEKEFQ---KNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
128-193 4.05e-06

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 46.66  E-value: 4.05e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048774915 128 FGDPSRPKNATRESTSTLKAWLNEH--RKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 193
Cdd:COG5576    44 KQDGSSPPKSKRRRTTDEQLMVLERefEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111
IRO smart00548
Motif in Iroquois-class homeodomain proteins (only). Unknown function;
345-362 2.16e-03

Motif in Iroquois-class homeodomain proteins (only). Unknown function;


Pssm-ID: 214716  Cd Length: 18  Bit Score: 35.63  E-value: 2.16e-03
                           10
                   ....*....|....*...
gi 2048774915  345 STLQKPKIWSLAETATSP 362
Cdd:smart00548   1 SPAAKPKIWSLADTATSS 18
 
Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 149-187 8.97e-17

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 73.70  E-value: 8.97e-17
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2048774915 149 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 187
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 138-192 2.36e-12

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 61.88  E-value: 2.36e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2048774915 138 TRESTSTLKAWLNehrKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 192
Cdd:cd00086     8 TPEQLEELEKEFE---KNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 138-189 5.84e-11

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 57.65  E-value: 5.84e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2048774915  138 TRESTSTLKAWLNehrKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 189
Cdd:smart00389   9 TPEQLEELEKEFQ---KNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
128-193 4.05e-06

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 46.66  E-value: 4.05e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2048774915 128 FGDPSRPKNATRESTSTLKAWLNEH--RKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 193
Cdd:COG5576    44 KQDGSSPPKSKRRRTTDEQLMVLERefEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111
Homeodomain pfam00046
Homeodomain;
138-190 7.47e-06

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 43.26  E-value: 7.47e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2048774915 138 TRESTSTLKAwlnEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 190
Cdd:pfam00046   8 TPEQLEELEK---EFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
IRO smart00548
Motif in Iroquois-class homeodomain proteins (only). Unknown function;
345-362 2.16e-03

Motif in Iroquois-class homeodomain proteins (only). Unknown function;


Pssm-ID: 214716  Cd Length: 18  Bit Score: 35.63  E-value: 2.16e-03
                           10
                   ....*....|....*...
gi 2048774915  345 STLQKPKIWSLAETATSP 362
Cdd:smart00548   1 SPAAKPKIWSLADTATSS 18
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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