|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
55-322 |
1.79e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 88.51 E-value: 1.79e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 55 NLLAYIKHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKVKQtckkfsnpYSIE 134
Cdd:COG3914 5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAA--------ALLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 135 YSELDCEEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLG 214
Cdd:COG3914 77 LAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE---ALAALRRALALNPDFAEAYLNLG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 215 LKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIgccykakVRQMQN 294
Cdd:COG3914 154 EALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL-------LFALRQ 226
|
250 260
....*....|....*....|....*....
gi 31542980 295 TGESE-ASGNKEMIEALKQYAMDYSNKAL 322
Cdd:COG3914 227 ACDWEvYDRFEELLAALARGPSELSPFAL 255
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
143-290 |
5.65e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 83.13 E-value: 5.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 143 GWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNK 222
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEE---ALADYEQALELDPDDAEALNNLGLALQALGR 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31542980 223 EAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKAKVR 290
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
141-274 |
6.10e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 71.76 E-value: 6.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 141 EEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLGLKLQKM 220
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDE---AIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 31542980 221 NKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNN 274
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
154-274 |
2.82e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.65 E-value: 2.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 154 RAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEA 233
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDE---ALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA 77
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 31542980 234 LEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNN 274
Cdd:COG4235 78 LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
150-287 |
9.52e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 9.52e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 150 GRNERAKVCFEKALEEKPNNPEFSSGLAiAMYHLDNHPEKqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQF 229
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALRLLA-EIYEQEGDWEK--AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 31542980 230 VEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKA 287
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
146-340 |
4.99e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 69.37 E-value: 4.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 146 QLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAE 225
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDR---AIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 226 GEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYkakvrqmqntgesEASGNKE 305
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-------------LEQGDYD 161
|
170 180 190
....*....|....*....|....*....|....*
gi 31542980 306 miEALKQYamdysNKALEKGLNPLNAYSDLAEFLE 340
Cdd:COG2956 162 --EAIEAL-----EKALKLDPDCARALLLLAELYL 189
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
51-269 |
5.13e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.88 E-value: 5.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 51 ATMYNLLAYIKHLDGNNEAALECLRQAEElIQQEHADqaeirslvTWGNYAWVYYHLGRLsdaqiyvdkvkqtckkfsnp 130
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALE-LDPDDAE--------ALYNLGLAYLRLGRY-------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 131 ysieyseldceegwtqlkcgrnERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVK 210
Cdd:COG0457 59 ----------------------EEALADYEQALELDPDDAEALNNLGLALQALGRYEE---ALEDYDKALELDPDDAEAL 113
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 31542980 211 VLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLE 269
Cdd:COG0457 114 YNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
163-340 |
9.44e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.11 E-value: 9.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 163 LEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTD 242
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEE---AIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 243 VLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYkakvrqmQNTGESEasgnkemiEALKQYamdysNKAL 322
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL-------LELGRYD--------EAIEAY-----ERAL 137
|
170
....*....|....*...
gi 31542980 323 EKGLNPLNAYSDLAEFLE 340
Cdd:COG0457 138 ELDPDDADALYNLGIALE 155
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
55-326 |
1.43e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 70.11 E-value: 1.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 55 NLLAYIKHLDGNNEAALECLRQAEELiqQEHADQAEIRsLVTwgnyawVYYHLGRLSDAQIYVDKVKqtcKKFSNPYSIE 134
Cdd:TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIAL--RPNNIAVLLA-LAT------ILIEAGEFEEAEKHADALL---KKAPNSPLAH 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 135 YSEldceeGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPE-KQFSTDVLKQAielsPDNQYVKVLL 213
Cdd:TIGR02917 265 YLK-----ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQaYQYLNQILKYA----PNSHQARRLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 214 GLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCY--KAKVRQ 291
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKlsQGDPSE 415
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 31542980 292 MQNTGESEASGNKEMIEA--------LKQYAMDYSNKALEKGL 326
Cdd:TIGR02917 416 AIADLETAAQLDPELGRAdlllilsyLRSGQFDKALAAAKKLE 458
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
196-287 |
3.23e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.06 E-value: 3.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 196 LKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNG 275
Cdd:COG4783 27 LEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP 106
|
90
....*....|..
gi 31542980 276 YLYHQIGCCYKA 287
Cdd:COG4783 107 EAYLRLARAYRA 118
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
45-269 |
4.81e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.93 E-value: 4.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 45 LNTEFKATMYNLLAYIKHLDGNNEAALECLRQAEELiqqeHADQAEirslvTWGNYAWVYYHLGRLsdaqiyvdkvkqtc 124
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALAL----NPDNAE-----ALFNLGNLLLALGRL-------------- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 125 kkfsnpysieyseldceegwtqlkcgrnERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSP 204
Cdd:COG3914 129 ----------------------------EEALAALRRALALNPDFAEAYLNLGEALRRLGRLEE---AIAALRRALELDP 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542980 205 DNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPcQTDVLRSAAKFYRRKGDLDKAIELFQRVLE 269
Cdd:COG3914 178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDP-DNADAHSNLLFALRQACDWEVYDRFEELLA 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
54-269 |
7.74e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 59.74 E-value: 7.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 54 YNLLAYIKHLDGNNEAALECLRQAEELIQQEhadqaeirslvtwgnyAWVYYHLGRLSDAQiyvdkvkqtckkfsnpysi 133
Cdd:COG2956 113 LRLLAEIYEQEGDWEKAIEVLERLLKLGPEN----------------AHAYCELAELYLEQ------------------- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 134 eyseldceegwtqlkcGRNERAKVCFEKALEEKPNNPEFSSGLAiAMYHLDNHPEKqfSTDVLKQAIELSPDNQYVKVLL 213
Cdd:COG2956 158 ----------------GDYDEAIEALEKALKLDPDCARALLLLA-ELYLEQGDYEE--AIAALERALEQDPDYLPALPRL 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 31542980 214 GLKLQKMNKEAEGEQFVEEALEKSPcQTDVLRSAAKFYRRKGDLDKAIELFQRVLE 269
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
103-440 |
2.51e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.71 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 103 VYYHLGRLSDAQIYVDKVKQTCKKFSNPYSIEYSeldceegwTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAmyH 182
Cdd:TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS--------IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA--Y 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 183 LDN-HPEKqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAI 261
Cdd:TIGR02917 374 LALgDFEK--AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 262 ELFQRVLESTPNNGYLYHQIGCCYkakvrqmqntgeseaSGNKEMIEALKQYamdysNKALEkgLNPLN--AYSDLAEFL 339
Cdd:TIGR02917 452 AAAKKLEKKQPDNASLHNLLGAIY---------------LGKGDLAKAREAF-----EKALS--IEPDFfpAAANLARID 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 340 ETEcyqtpfnKEVPDAekqqsHQRYCNLQKYNGKSEDTAVQhgLEGLSISKKSTD------KEEIKDQPQNV------SE 407
Cdd:TIGR02917 510 IQE-------GNPDDA-----IQRFEKVLTIDPKNLRAILA--LAGLYLRTGNEEeavawlEKAAELNPQEIepalalAQ 575
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 31542980 408 NLLPQN------------------APNYWYLQGLIHKQNGDLLQAAKCYEK 440
Cdd:TIGR02917 576 YYLGKGqlkkalailneaadaapdSPEAWLMLGRAQLAAGDLNKAVSSFKK 626
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
196-273 |
1.02e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.48 E-value: 1.02e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 31542980 196 LKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFvEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPN 273
Cdd:COG3063 15 YEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
50-206 |
1.30e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 50 KATMYNLLAYIKHLDGNNEAALECLRQAEELiqqeHADQAEIrslvtWGNYAWVYYHLGRLSDAQIYVDKVKQTckkfsN 129
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALEL----DPDNPEA-----FALLGEILLQLGDLDEAIVLLHEALEL-----D 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31542980 130 PysiEYSELDCEEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEKQfstDVLKQAIELSPDN 206
Cdd:COG4783 69 P---DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAI---AALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
51-266 |
1.27e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.70 E-value: 1.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 51 ATMYNLLAYIKHLDGNNEAALECLRQAEELiqqehadqaEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKVKQTckkfsNP 130
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALEL---------DPDDAEALNNLGLALQALGRYEEALEDYDKALEL-----DP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 131 YSIE-YSELdceeGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEKQFSTDVLKQAIELSPDNQYV 209
Cdd:COG0457 108 DDAEaLYNL----GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAAL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 31542980 210 KVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQR 266
Cdd:COG0457 184 GEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
146-238 |
1.49e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.40 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 146 QLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPE-KQFstdvlKQAIELSPDNQYVKVLLGLKLQKMNKEA 224
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEaIAL-----EKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....
gi 31542980 225 EGEQFVEEALEKSP 238
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
147-269 |
2.34e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.45 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 147 LKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEG 226
Cdd:COG4785 84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDA---ALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31542980 227 EQFVEEALEKSP-----------CQTDVLRSAAKF---------YRRKGDLDKAIELFQRVLE 269
Cdd:COG4785 161 IADLEKALELDPndperalwlylAERKLDPEKALAllledwataYLLQGDTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
213-287 |
3.75e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.42 E-value: 3.75e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542980 213 LGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKA 287
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
194-272 |
4.47e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 4.47e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31542980 194 DVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTP 272
Cdd:COG5010 75 ALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
110-274 |
6.47e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 6.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 110 LSDAQIYVDKVKQTCKKFSNPYSI---EYSELDCEEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLA-IAMYHLDN 185
Cdd:TIGR02917 96 LARAYLLQGKFQQVLDELPGKTLLddeGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAqLALAENRF 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 186 HPEKQFSTDVL------------------------------KQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALE 235
Cdd:TIGR02917 176 DEARALIDEVLtadpgnvdalllkgdlllslgnielalaayRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK 255
|
170 180 190
....*....|....*....|....*....|....*....
gi 31542980 236 KSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNN 274
Cdd:TIGR02917 256 KAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY 294
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
50-274 |
7.62e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.01 E-value: 7.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 50 KATMYNLLAYIKHLDGNNEAALECLRQAEElIQQEHADQAeirslvtwGNYAWVYYHLGRLSDAQIYVDKVKQTCKKfSN 129
Cdd:TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALS-IEPDFFPAA--------ANLARIDIQEGNPDDAIQRFEKVLTIDPK-NL 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 130 PYSIEYSELdceegwtQLKCGRNERAKVCFEKALEEkpNNPEFSSGLAIAMYHLDNHPEKQfSTDVLKQAIELSPDNQYV 209
Cdd:TIGR02917 534 RAILALAGL-------YLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKK-ALAILNEAADAAPDSPEA 603
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31542980 210 KVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNN 274
Cdd:TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN 668
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
54-204 |
3.35e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 3.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 54 YNLLAYIKHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKVKQtckkfSNPYSI 133
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ-----LDPNNP 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31542980 134 E-YSELdceeGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEKQfstDVLKQAIELSP 204
Cdd:COG5010 89 ElYYNL----ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAK---AALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
207-442 |
5.47e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.80 E-value: 5.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 207 QYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYk 286
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 287 akvrqmqntgesEASGNKEmiEALKQYamdysNKALEKGLNPLNAYSDLAEFLETEcyqtpfnKEVPDA---------EK 357
Cdd:COG2956 87 ------------LKAGLLD--RAEELL-----EKLLELDPDDAEALRLLAEIYEQE-------GDWEKAievlerllkLG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 358 QQSHQRYCNL-QKYNGKSE-DTAVQHGLEGLSISKKSTDkeeikdqpqnvsenllpqnapnYWYLQGLIHKQNGDLLQAA 435
Cdd:COG2956 141 PENAHAYCELaELYLEQGDyDEAIEALEKALKLDPDCAR----------------------ALLLLAELYLEQGDYEEAI 198
|
....*..
gi 31542980 436 KCYEKEL 442
Cdd:COG2956 199 AALERAL 205
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
51-116 |
7.54e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.92 E-value: 7.54e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 31542980 51 ATMYNLLAYIKHLDGNNEAALECLRQAEELIQQEHADQAEIRsLVTWGNYAWVYYHLGRLSDAQIY 116
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLT-ATTLLNLGRLYLELGRYEEALEL 67
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
217-288 |
9.84e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 9.84e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31542980 217 LQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKAK 288
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
147-269 |
2.69e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 46.90 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 147 LKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEKQFSTDvlkQAIELSPDNQYVKVLLGLKLQKMNKEAEG 226
Cdd:TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQ---KSIDLDPDFIFSHIQLGVTQYKEGSIASS 452
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 31542980 227 EQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLE 269
Cdd:TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
134-283 |
3.23e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 46.52 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 134 EYSELDCEEGWTQLKCGRN----------ERAKVCFEKALEEKpnnpEFSSGLAIAMYH------LDNHPEKQFSTdvLK 197
Cdd:TIGR00990 282 DSNELDEETGNGQLQLGLKspeskadesyEEAARAFEKALDLG----KLGEKEAIALNLrgtfkcLKGKHLEALAD--LS 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 198 QAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYL 277
Cdd:TIGR00990 356 KSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435
|
....*.
gi 31542980 278 YHQIGC 283
Cdd:TIGR00990 436 HIQLGV 441
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
217-288 |
4.66e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 4.66e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31542980 217 LQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIElFQRVLESTPNNGYLYHQIGCCYKAK 288
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
51-236 |
6.54e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.61 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 51 ATMYNLLAYIKHLDGNNEAALECLRQAEElIQQEHADqaeirslvTWGNYAWVYYHLGRLSDAQIYVDKVKQtckkfsnp 130
Cdd:COG0457 76 AEALNNLGLALQALGRYEEALEDYDKALE-LDPDDAE--------ALYNLGLALLELGRYDEAIEAYERALE-------- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 131 YSIEYSELDCEEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEKQFSTDVLKQAIELSPDNQYVK 210
Cdd:COG0457 139 LDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
170 180
....*....|....*....|....*.
gi 31542980 211 VLLGLKLQKMNKEAEGEQFVEEALEK 236
Cdd:COG0457 219 LAELLLLALALLLALRLAALALYQYR 244
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
150-269 |
6.96e-05 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 44.49 E-value: 6.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 150 GRNERAKVCFEKALE-EKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKV--LLGLKLQKMNKEAEG 226
Cdd:COG4700 103 GRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAE---ALETLEKLIAKNPDFKSSDAhlLYARALEALGDLEAA 179
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 31542980 227 EQFVEEALEKSPCQTDVLRsAAKFYRRKGDLDKAIELFQRVLE 269
Cdd:COG4700 180 EAELEALARRYSGPEARYR-YAKFLARQGRTAEAKELLEEILD 221
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
147-275 |
1.27e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.69 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 147 LKCGRNERAKVCFEKALEEKPNNPEFSSGLAiAMYHLDNHPEKqfSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEG 226
Cdd:TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALA-GLYLRTGNEEE--AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKA 586
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 31542980 227 EQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNG 275
Cdd:TIGR02917 587 LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
50-287 |
3.69e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 50 KATMYNLLAYIKHLDGNNEAALECLRQAEELiqQEHADQAEIRslvtwgnyawvyyhLGRLSDAQIYVDKVKQTCKKFSN 129
Cdd:TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIG--------------LAQLLLAAKRTESAKKIAKSLQK 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 130 PYsIEYSELDCEEGWTQLKCGRNERAKVCFEKALEEKPN-------------NPEFSSGLAIAMYHLDNHPE-------- 188
Cdd:TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnaiklhrallaSGNTAEAVKTLEAWLKTHPNdavlrtal 776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 189 -----KQFSTD----VLKQAIELSPDNQYVKVLLGLKLQKmNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDK 259
Cdd:TIGR02917 777 aelylAQKDYDkaikHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADR 855
|
250 260
....*....|....*....|....*...
gi 31542980 260 AIELFQRVLESTPNNGYLYHQIGCCYKA 287
Cdd:TIGR02917 856 ALPLLRKAVNIAPEAAAIRYHLALALLA 883
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
150-274 |
3.80e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.15 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 150 GRNERAKVCFEKALEEKPNNPE--FSSGL--------AIAMYHLDNHPEKQFSTDVLkqaiELSPDNQYVKVL-LGLKLQ 218
Cdd:PRK11447 509 GQRSQADALMRRLAQQKPNDPEqvYAYGLylsgsdrdRAALAHLNTLPRAQWNSNIQ----ELAQRLQSDQVLeTANRLR 584
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 31542980 219 KMNKEAEGEQFveeaLEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNN 274
Cdd:PRK11447 585 DSGKEAEAEAL----LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN 636
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
54-164 |
1.09e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.67 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 54 YNLLAYIKHLDGNNEAALECLRQAEELiQQEHADqaeirslvTWGNYAWVYYHLGRLSDAQIYVDKVKQTCKKFSNPYSI 133
Cdd:COG4785 110 YNNRGLAYLLLGDYDAALEDFDRALEL-DPDYAY--------AYLNRGIALYYLGRYELAIADLEKALELDPNDPERALW 180
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 31542980 134 EY------------SELDCEEGWTQLKCGRNERAKVCFEKALE 164
Cdd:COG4785 181 LYlaerkldpekalALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
48-291 |
1.30e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 41.51 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 48 EFKATMYNLLAYIKHLDGNNEAALECLRQAEEL---------------IQQEHADQAE---IRSLVTWGNYAWVYYH--- 106
Cdd:TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELdprvtqsyikrasmnLELGDPDKAEedfDKALKLNSEDPDIYYHraq 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 107 ----LGRLSDAQIYVDKVKQTCKKFSNPYsieyseldCEEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYH 182
Cdd:TIGR00990 408 lhfiKGEFAQAGKDYQKSIDLDPDFIFSH--------IQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 183 LDNHPE--KQFSTDVlkqAIELSPDNQYVKV--LLGLKL---QKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKG 255
Cdd:TIGR00990 480 QNKFDEaiEKFDTAI---ELEKETKPMYMNVlpLINKALalfQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556
|
250 260 270
....*....|....*....|....*....|....*.
gi 31542980 256 DLDKAIELFQRVLESTPNNGYLYHQIGCCYKAKVRQ 291
Cdd:TIGR00990 557 DVDEALKLFERAAELARTEGELVQAISYAEATRTQI 592
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
231-317 |
2.16e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.45 E-value: 2.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 231 EEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYkakvRQMQNTGESEASGNK------ 304
Cdd:COG4235 7 RQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL----LAAGDTEEAEELLERalaldp 82
|
90
....*....|...
gi 31542980 305 EMIEALKQYAMDY 317
Cdd:COG4235 83 DNPEALYLLGLAA 95
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
168-282 |
2.47e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.89 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 168 NNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLGLKLqkmNKEAEGEQFVEEALEKSPCQTDVLRSA 247
Cdd:COG3071 191 RDPELAAAYARALIALGDHDE---AERLLREALKRQWDPRLVRLYGRLQG---GDPAKQLKRAEKWLKKHPNDPDLLLAL 264
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 31542980 248 AKFYRRKGDLDKAIELFQRVLESTPNN------GYLYHQIG 282
Cdd:COG3071 265 GRLCLRNQLWGKAREYLEAALALRPSAeayaelARLLEQLG 305
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
55-275 |
5.30e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 39.30 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 55 NLLAYIKHLDGNNEAALECLRQAEELiqqehaDQAEIRSLVTWGNYawvYYHLGRLSDAQIYVDKVKQTCKKfsnpySIE 134
Cdd:TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAEL------NPQEIEPALALAQY---YLGKGQLKKALAILNEAADAAPD-----SPE 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 135 YSELdceEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEkqfSTDVLKQAIELSPDNQYVKVLLG 214
Cdd:TIGR02917 603 AWLM---LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK---AITSLKRALELKPDNTEAQIGLA 676
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31542980 215 LKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNG 275
Cdd:TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ 737
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
209-269 |
5.77e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.83 E-value: 5.77e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 31542980 209 VKVLLGLKLQKMNKEAEGEQFVEEALE--------KSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLE 269
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEiarrllgpDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
150-213 |
6.91e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.25 E-value: 6.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 31542980 150 GRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEKQfstDVLKQAIELSPDNQYVKVLL 213
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAE---ALLAALPAADPDDPRYAALL 62
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
240-339 |
8.05e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 36.71 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 240 QTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYkakvrqmQNTGESEasgnkemiEALKQYamdysN 319
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEIL-------LQLGDLD--------EAIVLL-----H 62
|
90 100
....*....|....*....|
gi 31542980 320 KALEKGLNPLNAYSDLAEFL 339
Cdd:COG4783 63 EALELDPDEPEARLNLGLAL 82
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
65-168 |
8.07e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.92 E-value: 8.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31542980 65 GNNEAALECLRQAEELiqqeHADQAEIrslvtWGNYAWVYYHLGRLSDAQIYvDKVKQTCKKFSNPYsieyseldCEEGW 144
Cdd:COG3063 6 GDLEEAEEYYEKALEL----DPDNADA-----LNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEAL--------LNLAE 67
|
90 100
....*....|....*....|....
gi 31542980 145 TQLKCGRNERAKVCFEKALEEKPN 168
Cdd:COG3063 68 LLLELGDYDEALAYLERALELDPS 91
|
|
| |
