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Conserved domains on  [gi|4758940|ref|NP_004885|]
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ATP synthase subunit ATP5MJ, mitochondrial isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mit_proteolip super family cl06877
Mitochondrial proteolipid; This family consists of proteins with similarity to the ...
 1-57 4.18e-28

Mitochondrial proteolipid; This family consists of proteins with similarity to the mitochondrial proteolipids. Mitochondrial proteolipid consists of about 60 amino acids residues and is about 6.8 kDa in size.


The actual alignment was detected with superfamily member pfam08039:

Pssm-ID: 429796  Cd Length: 60  Bit Score: 94.75  E-value: 4.18e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 4758940     1 MLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKRSKALKASAPAPGH 57
Cdd:pfam08039  1 MLQSLIKNVWIPMKPYYTQVYQEIWVGTGLMAFIVYKIRSADKRSKALKASSPAPAH 57
 
Name Accession Description Interval E-value
Mit_proteolip pfam08039
Mitochondrial proteolipid; This family consists of proteins with similarity to the ...
 1-57 4.18e-28

Mitochondrial proteolipid; This family consists of proteins with similarity to the mitochondrial proteolipids. Mitochondrial proteolipid consists of about 60 amino acids residues and is about 6.8 kDa in size.


Pssm-ID: 429796  Cd Length: 60  Bit Score: 94.75  E-value: 4.18e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 4758940     1 MLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKRSKALKASAPAPGH 57
Cdd:pfam08039  1 MLQSLIKNVWIPMKPYYTQVYQEIWVGTGLMAFIVYKIRSADKRSKALKASSPAPAH 57
 
Name Accession Description Interval E-value
Mit_proteolip pfam08039
Mitochondrial proteolipid; This family consists of proteins with similarity to the ...
 1-57 4.18e-28

Mitochondrial proteolipid; This family consists of proteins with similarity to the mitochondrial proteolipids. Mitochondrial proteolipid consists of about 60 amino acids residues and is about 6.8 kDa in size.


Pssm-ID: 429796  Cd Length: 60  Bit Score: 94.75  E-value: 4.18e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 4758940     1 MLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKRSKALKASAPAPGH 57
Cdd:pfam08039  1 MLQSLIKNVWIPMKPYYTQVYQEIWVGTGLMAFIVYKIRSADKRSKALKASSPAPAH 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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