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Conserved domains on  [gi|1676317613|ref|NP_006476|]
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fibulin-1 isoform B precursor [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
30-79 4.11e-08

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


:

Pssm-ID: 237984  Cd Length: 70  Bit Score: 50.54  E-value: 4.11e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1676317613  30 DVLLEACCADGHRMATHQKDCSLPYA--TESKECRMVQEQCCHSQLEELHCA 79
Cdd:cd00017    11 DKELRKCCLDGMRENPMGQTCEERAAyiTDGKECRKAFLECCVYAEELRDEE 62
ANATO super family cl00032
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
97-152 1.37e-06

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


The actual alignment was detected with superfamily member cd00017:

Pssm-ID: 469586  Cd Length: 70  Bit Score: 45.91  E-value: 1.37e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676317613  97 DNASLEATFV-KRCCHCCLLGRAAQAQGQSCEYSL---MVGYQCGQVFQACCVKSQETGD 152
Cdd:cd00017     1 KNSEKAAQYKdKELRKCCLDGMRENPMGQTCEERAayiTDGKECRKAFLECCVYAEELRD 60
EGF_CA pfam07645
Calcium-binding EGF domain;
216-243 9.44e-06

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 42.61  E-value: 9.44e-06
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 216 DVNECITGSHSCRLGESCINTVGSFRCQ 243
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
EGF_CA smart00179
Calcium-binding EGF-like domain;
356-389 3.42e-05

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 3.42e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1676317613  356 DVDECAPPAePCGKGHRCVNSPGSFRCECKTGYY 389
Cdd:smart00179   1 DIDECASGN-PCQNGGTCVNTVGSYRCECPPGYT 33
EGF_CA pfam07645
Calcium-binding EGF domain;
525-559 1.43e-04

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.14  E-value: 1.43e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1676317613 525 DIDECVTGIHNCSINETCFNIQGGFRCLafeCPEN 559
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
262-289 2.38e-04

Calcium-binding EGF domain;


:

Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.76  E-value: 2.38e-04
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 262 DIDECESGIHNCLPDFICQNTLGSFRCR 289
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
vWFA super family cl00057
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
479-522 3.67e-04

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


The actual alignment was detected with superfamily member cd01475:

Pssm-ID: 469594 [Multi-domain]  Cd Length: 224  Bit Score: 42.37  E-value: 3.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1676317613 479 CEDIDECAlpTGGHICSYRCINIPGSFQCSCpSSGYRLAPNGRN 522
Cdd:cd01475   184 CVVPDLCA--TLSHVCQQVCISTPGSYLCAC-TEGYALLEDNKT 224
EGF_CA smart00179
Calcium-binding EGF-like domain;
308-355 5.64e-04

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.61  E-value: 5.64e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1676317613  308 DINECLSISaPCPIGHTCINTEGSYTCQknvpnCGRGYHlneEGTRCV 355
Cdd:smart00179   1 DIDECASGN-PCQNGGTCVNTVGSYRCE-----CPPGYT---DGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
399-440 8.79e-04

Calcium-binding EGF-like domain;


:

Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.23  E-value: 8.79e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1676317613  399 DVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRlsvDGRSCE 440
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
 
Name Accession Description Interval E-value
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
30-79 4.11e-08

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 50.54  E-value: 4.11e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1676317613  30 DVLLEACCADGHRMATHQKDCSLPYA--TESKECRMVQEQCCHSQLEELHCA 79
Cdd:cd00017    11 DKELRKCCLDGMRENPMGQTCEERAAyiTDGKECRKAFLECCVYAEELRDEE 62
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
97-152 1.37e-06

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 45.91  E-value: 1.37e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676317613  97 DNASLEATFV-KRCCHCCLLGRAAQAQGQSCEYSL---MVGYQCGQVFQACCVKSQETGD 152
Cdd:cd00017     1 KNSEKAAQYKdKELRKCCLDGMRENPMGQTCEERAayiTDGKECRKAFLECCVYAEELRD 60
EGF_CA pfam07645
Calcium-binding EGF domain;
216-243 9.44e-06

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 42.61  E-value: 9.44e-06
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 216 DVNECITGSHSCRLGESCINTVGSFRCQ 243
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
EGF_CA smart00179
Calcium-binding EGF-like domain;
356-389 3.42e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 3.42e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1676317613  356 DVDECAPPAePCGKGHRCVNSPGSFRCECKTGYY 389
Cdd:smart00179   1 DIDECASGN-PCQNGGTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
356-389 3.72e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 41.08  E-value: 3.72e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1676317613 356 DVDECAPPaEPCGKGHRCVNSPGSFRCECKTGYY 389
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT 33
EGF_CA pfam07645
Calcium-binding EGF domain;
525-559 1.43e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.14  E-value: 1.43e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1676317613 525 DIDECVTGIHNCSINETCFNIQGGFRCLafeCPEN 559
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
262-289 2.38e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.76  E-value: 2.38e-04
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 262 DIDECESGIHNCLPDFICQNTLGSFRCR 289
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
479-522 3.67e-04

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 42.37  E-value: 3.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1676317613 479 CEDIDECAlpTGGHICSYRCINIPGSFQCSCpSSGYRLAPNGRN 522
Cdd:cd01475   184 CVVPDLCA--TLSHVCQQVCISTPGSYLCAC-TEGYALLEDNKT 224
ANATO smart00104
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
36-69 4.13e-04

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 197517  Cd Length: 35  Bit Score: 38.08  E-value: 4.13e-04
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1676317613   36 CCADGHRMATHQKDCS-LPYATESKECRMVQEQCC 69
Cdd:smart00104   1 CCADGMRLAPMGETCEeRAARINSGDCRKAFLQCC 35
EGF_CA smart00179
Calcium-binding EGF-like domain;
308-355 5.64e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.61  E-value: 5.64e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1676317613  308 DINECLSISaPCPIGHTCINTEGSYTCQknvpnCGRGYHlneEGTRCV 355
Cdd:smart00179   1 DIDECASGN-PCQNGGTCVNTVGSYRCE-----CPPGYT---DGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
399-440 8.79e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.23  E-value: 8.79e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1676317613  399 DVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRlsvDGRSCE 440
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
308-347 1.44e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 1.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1676317613 308 DINECLSISaPCPIGHTCINTEGSYTCQknvpnCGRGYHL 347
Cdd:cd00054     1 DIDECASGN-PCQNGGTCVNTVGSYRCS-----CPPGYTG 34
EGF_CA pfam07645
Calcium-binding EGF domain;
356-387 3.16e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 35.29  E-value: 3.16e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1676317613 356 DVDECAPPAEPCGKGHRCVNSPGSFRCECKTG 387
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
506-528 3.66e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.08  E-value: 3.66e-03
                          10        20
                  ....*....|....*....|...
gi 1676317613 506 QCSCPSsGYRLAPNGRNCQDIDE 528
Cdd:pfam12662   1 TCSCPP-GYQLDPDGRTCVDIDE 22
EGF_CA pfam07645
Calcium-binding EGF domain;
308-335 4.51e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 34.91  E-value: 4.51e-03
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 308 DINECLSISAPCPIGHTCINTEGSYTCQ 335
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
EGF_CA smart00179
Calcium-binding EGF-like domain;
262-298 6.55e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 34.53  E-value: 6.55e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1676317613  262 DIDECESGiHNCLPDFICQNTLGSFRCrpklQCKSGF 298
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRC----ECPPGY 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
399-440 8.02e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 34.53  E-value: 8.02e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1676317613 399 DVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRlsvdGRSCE 440
Cdd:cd00054     1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT----GRNCE 38
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
424-444 8.44e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 33.92  E-value: 8.44e-03
                          10        20
                  ....*....|....*....|.
gi 1676317613 424 CSCSVGFRLSVDGRSCEDINE 444
Cdd:pfam12662   2 CSCPPGYQLDPDGRTCVDIDE 22
 
Name Accession Description Interval E-value
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
30-79 4.11e-08

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 50.54  E-value: 4.11e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1676317613  30 DVLLEACCADGHRMATHQKDCSLPYA--TESKECRMVQEQCCHSQLEELHCA 79
Cdd:cd00017    11 DKELRKCCLDGMRENPMGQTCEERAAyiTDGKECRKAFLECCVYAEELRDEE 62
ANATO cd00017
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
97-152 1.37e-06

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to repeats in fibulins.


Pssm-ID: 237984  Cd Length: 70  Bit Score: 45.91  E-value: 1.37e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1676317613  97 DNASLEATFV-KRCCHCCLLGRAAQAQGQSCEYSL---MVGYQCGQVFQACCVKSQETGD 152
Cdd:cd00017     1 KNSEKAAQYKdKELRKCCLDGMRENPMGQTCEERAayiTDGKECRKAFLECCVYAEELRD 60
EGF_CA pfam07645
Calcium-binding EGF domain;
216-243 9.44e-06

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 42.61  E-value: 9.44e-06
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 216 DVNECITGSHSCRLGESCINTVGSFRCQ 243
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
EGF_CA smart00179
Calcium-binding EGF-like domain;
356-389 3.42e-05

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 41.08  E-value: 3.42e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1676317613  356 DVDECAPPAePCGKGHRCVNSPGSFRCECKTGYY 389
Cdd:smart00179   1 DIDECASGN-PCQNGGTCVNTVGSYRCECPPGYT 33
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
356-389 3.72e-05

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 41.08  E-value: 3.72e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1676317613 356 DVDECAPPaEPCGKGHRCVNSPGSFRCECKTGYY 389
Cdd:cd00054     1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT 33
EGF_CA pfam07645
Calcium-binding EGF domain;
525-559 1.43e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 39.14  E-value: 1.43e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1676317613 525 DIDECVTGIHNCSINETCFNIQGGFRCLafeCPEN 559
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR---CPDG 32
EGF_CA pfam07645
Calcium-binding EGF domain;
262-289 2.38e-04

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 38.76  E-value: 2.38e-04
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 262 DIDECESGIHNCLPDFICQNTLGSFRCR 289
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
479-522 3.67e-04

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 42.37  E-value: 3.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1676317613 479 CEDIDECAlpTGGHICSYRCINIPGSFQCSCpSSGYRLAPNGRN 522
Cdd:cd01475   184 CVVPDLCA--TLSHVCQQVCISTPGSYLCAC-TEGYALLEDNKT 224
ANATO smart00104
Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments ...
36-69 4.13e-04

Anaphylatoxin homologous domain; C3a, C4a and C5a anaphylatoxins are protein fragments generated enzymatically in serum during activation of complement molecules C3, C4, and C5. They induce smooth muscle contraction. These fragments are homologous to a three-fold repeat in fibulins.


Pssm-ID: 197517  Cd Length: 35  Bit Score: 38.08  E-value: 4.13e-04
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 1676317613   36 CCADGHRMATHQKDCS-LPYATESKECRMVQEQCC 69
Cdd:smart00104   1 CCADGMRLAPMGETCEeRAARINSGDCRKAFLQCC 35
EGF_CA smart00179
Calcium-binding EGF-like domain;
308-355 5.64e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.61  E-value: 5.64e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1676317613  308 DINECLSISaPCPIGHTCINTEGSYTCQknvpnCGRGYHlneEGTRCV 355
Cdd:smart00179   1 DIDECASGN-PCQNGGTCVNTVGSYRCE-----CPPGYT---DGRNCE 39
EGF_CA smart00179
Calcium-binding EGF-like domain;
399-440 8.79e-04

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 37.23  E-value: 8.79e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1676317613  399 DVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRlsvDGRSCE 440
Cdd:smart00179   1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
308-347 1.44e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 1.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1676317613 308 DINECLSISaPCPIGHTCINTEGSYTCQknvpnCGRGYHL 347
Cdd:cd00054     1 DIDECASGN-PCQNGGTCVNTVGSYRCS-----CPPGYTG 34
EGF_CA pfam07645
Calcium-binding EGF domain;
356-387 3.16e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 35.29  E-value: 3.16e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1676317613 356 DVDECAPPAEPCGKGHRCVNSPGSFRCECKTG 387
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECRCPDG 32
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
506-528 3.66e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 35.08  E-value: 3.66e-03
                          10        20
                  ....*....|....*....|...
gi 1676317613 506 QCSCPSsGYRLAPNGRNCQDIDE 528
Cdd:pfam12662   1 TCSCPP-GYQLDPDGRTCVDIDE 22
EGF_CA pfam07645
Calcium-binding EGF domain;
308-335 4.51e-03

Calcium-binding EGF domain;


Pssm-ID: 429571  Cd Length: 32  Bit Score: 34.91  E-value: 4.51e-03
                          10        20
                  ....*....|....*....|....*...
gi 1676317613 308 DINECLSISAPCPIGHTCINTEGSYTCQ 335
Cdd:pfam07645   1 DVDECATGTHNCPANTVCVNTIGSFECR 28
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
354-388 4.90e-03

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 38.91  E-value: 4.90e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1676317613 354 CVDVDECAppAEPCGKGHRCVNSPGSFRCECKTGY 388
Cdd:cd01475   184 CVVPDLCA--TLSHVCQQVCISTPGSYLCACTEGY 216
EGF_CA smart00179
Calcium-binding EGF-like domain;
262-298 6.55e-03

Calcium-binding EGF-like domain;


Pssm-ID: 214542 [Multi-domain]  Cd Length: 39  Bit Score: 34.53  E-value: 6.55e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1676317613  262 DIDECESGiHNCLPDFICQNTLGSFRCrpklQCKSGF 298
Cdd:smart00179   1 DIDECASG-NPCQNGGTCVNTVGSYRC----ECPPGY 32
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
399-440 8.02e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 34.53  E-value: 8.02e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1676317613 399 DVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRlsvdGRSCE 440
Cdd:cd00054     1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT----GRNCE 38
cEGF pfam12662
Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved ...
424-444 8.44e-03

Complement Clr-like EGF-like; cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteriztic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue.


Pssm-ID: 463661  Cd Length: 22  Bit Score: 33.92  E-value: 8.44e-03
                          10        20
                  ....*....|....*....|.
gi 1676317613 424 CSCSVGFRLSVDGRSCEDINE 444
Cdd:pfam12662   2 CSCPPGYQLDPDGRTCVDIDE 22
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
395-438 8.67e-03

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 38.13  E-value: 8.67e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1676317613 395 RMCVDVNECQRYPgRLCGHKCENTLGSYLCSCSVGFRLSVDGRS 438
Cdd:cd01475   182 KICVVPDLCATLS-HVCQQVCISTPGSYLCACTEGYALLEDNKT 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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