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Conserved domains on  [gi|6381999|ref|NP_009311|]
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intron-encoded DNA endonuclease aI5 beta (mitochondrion) [Saccharomyces cerevisiae S288C]

Protein Classification

LAGLIDADG family homing endonuclease( domain architecture ID 10469810)

LAGLIDADG family homing endonuclease belongs to a large family of homing endonucleases that each contain one or two copies of a motif that resembles the consensus sequence LAGLIDADG and is directly involved in the DNA cutting process

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
201-300 1.89e-06

LAGLIDADG endonuclease;


:

Pssm-ID: 395767  Cd Length: 101  Bit Score: 45.70  E-value: 1.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6381999    201 LTGFNDADGYF---YTGFQKHKNSQ-WLKFHLELSQKDSYILDIIKKYFKTGGILKRdyKSGATAYIYKAQSSKAMKPFI 276
Cdd:pfam00961   1 LAGFIDGDGSFsinVTKSKSYKGYRvRLRFQISLHSKDENLLEKIKNYLGIGSISKR--KNDNTVIYIISNSKKSLNIII 78

                          90       100
                  ....*....|....*....|....
gi 6381999    277 EYFNNYqPLSTRRYKQYLLLNIAY 300
Cdd:pfam00961  79 PYFDKY-PLLTSKYLDYLDFKKIY 101
 
Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
201-300 1.89e-06

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 45.70  E-value: 1.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6381999    201 LTGFNDADGYF---YTGFQKHKNSQ-WLKFHLELSQKDSYILDIIKKYFKTGGILKRdyKSGATAYIYKAQSSKAMKPFI 276
Cdd:pfam00961   1 LAGFIDGDGSFsinVTKSKSYKGYRvRLRFQISLHSKDENLLEKIKNYLGIGSISKR--KNDNTVIYIISNSKKSLNIII 78

                          90       100
                  ....*....|....*....|....
gi 6381999    277 EYFNNYqPLSTRRYKQYLLLNIAY 300
Cdd:pfam00961  79 PYFDKY-PLLTSKYLDYLDFKKIY 101
 
Name Accession Description Interval E-value
LAGLIDADG_1 pfam00961
LAGLIDADG endonuclease;
201-300 1.89e-06

LAGLIDADG endonuclease;


Pssm-ID: 395767  Cd Length: 101  Bit Score: 45.70  E-value: 1.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6381999    201 LTGFNDADGYF---YTGFQKHKNSQ-WLKFHLELSQKDSYILDIIKKYFKTGGILKRdyKSGATAYIYKAQSSKAMKPFI 276
Cdd:pfam00961   1 LAGFIDGDGSFsinVTKSKSYKGYRvRLRFQISLHSKDENLLEKIKNYLGIGSISKR--KNDNTVIYIISNSKKSLNIII 78

                          90       100
                  ....*....|....*....|....
gi 6381999    277 EYFNNYqPLSTRRYKQYLLLNIAY 300
Cdd:pfam00961  79 PYFDKY-PLLTSKYLDYLDFKKIY 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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