Conserved domains on
[gi|6319392|ref|NP_009474|]
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Nup170p [Saccharomyces cerevisiae S288C]
Protein Classification
nuclear pore complex Nup155/Nup170 family protein( domain architecture ID 11474919)
nuclear pore complex Nup155/Nup170 family protein is required for both nuclear envelope (NE) membrane fusion and nuclear pore complexes (NPCs) assembly
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||||||||||||||||
| NUP170 | COG5308 | Nuclear pore complex subunit [Intracellular trafficking and secretion]; |
83-1496 | 0e+00 | |||||||||||||||||||
Nuclear pore complex subunit [Intracellular trafficking and secretion]; : Pssm-ID: 227624 [Multi-domain] Cd Length: 1263 Bit Score: 1754.08 E-value: 0e+00
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| Name | Accession | Description | Interval | E-value | |||||||||||||||||||
| NUP170 | COG5308 | Nuclear pore complex subunit [Intracellular trafficking and secretion]; |
83-1496 | 0e+00 | |||||||||||||||||||
Nuclear pore complex subunit [Intracellular trafficking and secretion]; Pssm-ID: 227624 [Multi-domain] Cd Length: 1263 Bit Score: 1754.08 E-value: 0e+00
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| Nucleoporin_C | pfam03177 | Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of ... |
832-1392 | 1.67e-103 | |||||||||||||||||||
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093; the other is represented by this family, and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore. Pssm-ID: 427181 Cd Length: 559 Bit Score: 342.37 E-value: 1.67e-103
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| Name | Accession | Description | Interval | E-value | |||||||||||||||||||
| NUP170 | COG5308 | Nuclear pore complex subunit [Intracellular trafficking and secretion]; |
83-1496 | 0e+00 | |||||||||||||||||||
Nuclear pore complex subunit [Intracellular trafficking and secretion]; Pssm-ID: 227624 [Multi-domain] Cd Length: 1263 Bit Score: 1754.08 E-value: 0e+00
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| Nucleoporin_C | pfam03177 | Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of ... |
832-1392 | 1.67e-103 | |||||||||||||||||||
Non-repetitive/WGA-negative nucleoporin C-terminal; This is the C-termainl half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterized by the FG repeat pfam03093; the other is represented by this family, and lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore. Pssm-ID: 427181 Cd Length: 559 Bit Score: 342.37 E-value: 1.67e-103
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| Nucleoporin_N | pfam08801 | Nup133 N terminal like; Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) ... |
144-649 | 1.03e-98 | |||||||||||||||||||
Nup133 N terminal like; Nup133 is a nucleoporin that is crucial for nuclear pore complex (NPC) biogenesis. The N terminal forms a seven-bladed beta propeller structure. This family now contains other sized nucleoporins, including Nup155, Nup8, Nuo132, Nup15 and Nup170. Pssm-ID: 400932 Cd Length: 426 Bit Score: 323.96 E-value: 1.03e-98
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