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Conserved domains on  [gi|6319529|ref|NP_009611|]
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U4/U6-U5 snRNP complex subunit PRP6 [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRP1_N pfam06424
PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1 ...
 11-131 6.14e-34

PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.


:

Pssm-ID: 461908  Cd Length: 109  Bit Score: 125.72  E-value: 6.14e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529     11 PPAGYVPGIGRGATGFSTKEkqvvsnddkgrriPKRYRENLNNhlqSQPKDDEDDEAANVFKTLELKLAQKKKKR--ANE 88
Cdd:pfam06424   1 APPGYVAGLGRGATGFTTDE-------------FEGYDGGLFA---GGPYDKDDEEADRIYEAIDERMDERRKKRreARE 64

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 6319529     89 KDDDNSVDSSNVK--RQFADLKESLAAVTESEWMDIPDATDFTRR 131
Cdd:pfam06424  65 KEELEKYRAERPKiqQQFADLKRGLATVSEEEWANIPEVGDLTRK 109
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 630-855 6.42e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 6.42e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  630 SGTERLYYKYVNFLRYQDLNEEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLS 709
Cdd:COG2956  39 PETVEAHLALGNLYRRRGEYDRAIRIH-QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  710 KIDEiDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSL 789
Cdd:COG2956 118 EIYE-QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6319529  790 KKTIFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYgDTWVWLFRTYARLGKD 855
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGL 261
COG5191 super family cl44200
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ...
 201-370 9.69e-04

Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];


The actual alignment was detected with superfamily member COG5191:

Pssm-ID: 227518 [Multi-domain]  Cd Length: 435  Bit Score: 42.64  E-value: 9.69e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  201 LSYLKDLENDRVNSLSDATLEDLQKMRTILKSYRKAD---PTNPQGWIASARLEEKARKFSVAKKIIENGCQECPRSSDI 277
Cdd:COG5191  64 LEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTnkfFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDL 143

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  278 WLENIRlHE----SDVHYCKTLVATAINFNPTSPLLWFKAIDLESTTVNKYRVVRKALQEIPRDEGLwKLAVSFEADKAQ 353
Cdd:COG5191 144 WIYCCA-FElfeiANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLINRREKTEILSNEIGL-DSDDKDEIERGQ 221

                       170
                ....*....|....*..
gi 6319529  354 ViKMLEKATQFIPQSMD 370
Cdd:COG5191 222 V-PFAVFADCFNSSCFT 237
 
Name Accession Description Interval E-value
PRP1_N pfam06424
PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1 ...
 11-131 6.14e-34

PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.


Pssm-ID: 461908  Cd Length: 109  Bit Score: 125.72  E-value: 6.14e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529     11 PPAGYVPGIGRGATGFSTKEkqvvsnddkgrriPKRYRENLNNhlqSQPKDDEDDEAANVFKTLELKLAQKKKKR--ANE 88
Cdd:pfam06424   1 APPGYVAGLGRGATGFTTDE-------------FEGYDGGLFA---GGPYDKDDEEADRIYEAIDERMDERRKKRreARE 64

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 6319529     89 KDDDNSVDSSNVK--RQFADLKESLAAVTESEWMDIPDATDFTRR 131
Cdd:pfam06424  65 KEELEKYRAERPKiqQQFADLKRGLATVSEEEWANIPEVGDLTRK 109
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 630-855 6.42e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 6.42e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  630 SGTERLYYKYVNFLRYQDLNEEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLS 709
Cdd:COG2956  39 PETVEAHLALGNLYRRRGEYDRAIRIH-QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  710 KIDEiDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSL 789
Cdd:COG2956 118 EIYE-QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6319529  790 KKTIFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYgDTWVWLFRTYARLGKD 855
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGL 261
COG5191 COG5191
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ...
 201-370 9.69e-04

Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];


Pssm-ID: 227518 [Multi-domain]  Cd Length: 435  Bit Score: 42.64  E-value: 9.69e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  201 LSYLKDLENDRVNSLSDATLEDLQKMRTILKSYRKAD---PTNPQGWIASARLEEKARKFSVAKKIIENGCQECPRSSDI 277
Cdd:COG5191  64 LEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTnkfFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDL 143

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  278 WLENIRlHE----SDVHYCKTLVATAINFNPTSPLLWFKAIDLESTTVNKYRVVRKALQEIPRDEGLwKLAVSFEADKAQ 353
Cdd:COG5191 144 WIYCCA-FElfeiANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLINRREKTEILSNEIGL-DSDDKDEIERGQ 221

                       170
                ....*....|....*..
gi 6319529  354 ViKMLEKATQFIPQSMD 370
Cdd:COG5191 222 V-PFAVFADCFNSSCFT 237
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 609-831 4.83e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 4.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529    609 QLDELRDFFQQTFSSLEDFKISGTERLYYKYVNFlRYqdlnEEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSR 688
Cdd:TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-RF----DEARALI-DEVLTADPGNVDALLLKGDLLLSLGNIELAL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529    689 ETYLSGTRLVPNCP----LLWVSLSKIDEIDL-----------------------------KNPVRARSILDRGLLKNPD 735
Cdd:TIGR02917 214 AAYRKAIALRPNNIavllALATILIEAGEFEEaekhadallkkapnsplahylkalvdfqkKNYEDARETLQDALKSAPE 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529    736 DV-LFYIAKIQMeIRLGNLDQAELLVTQALQKFPSN--ALLWVEQIKLfKHGNKSSLKKTIfQDALRRTQNDHRVLLEIG 812
Cdd:TIGR02917 294 YLpALLLAGASE-YQLGNLEQAYQYLNQILKYAPNShqARRLLASIQL-RLGRVDEAIATL-SPALGLDPDDPAALSLLG 370

                         250
                  ....*....|....*....
gi 6319529    813 VSFYAEAQYETSLKWLERA 831
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKA 389
 
Name Accession Description Interval E-value
PRP1_N pfam06424
PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1 ...
 11-131 6.14e-34

PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.


Pssm-ID: 461908  Cd Length: 109  Bit Score: 125.72  E-value: 6.14e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529     11 PPAGYVPGIGRGATGFSTKEkqvvsnddkgrriPKRYRENLNNhlqSQPKDDEDDEAANVFKTLELKLAQKKKKR--ANE 88
Cdd:pfam06424   1 APPGYVAGLGRGATGFTTDE-------------FEGYDGGLFA---GGPYDKDDEEADRIYEAIDERMDERRKKRreARE 64

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 6319529     89 KDDDNSVDSSNVK--RQFADLKESLAAVTESEWMDIPDATDFTRR 131
Cdd:pfam06424  65 KEELEKYRAERPKiqQQFADLKRGLATVSEEEWANIPEVGDLTRK 109
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 630-855 6.42e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 6.42e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  630 SGTERLYYKYVNFLRYQDLNEEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLS 709
Cdd:COG2956  39 PETVEAHLALGNLYRRRGEYDRAIRIH-QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLA 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  710 KIDEiDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSL 789
Cdd:COG2956 118 EIYE-QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 6319529  790 KKTIFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYgDTWVWLFRTYARLGKD 855
Cdd:COG2956 197 AIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGL 261
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 630-770 6.00e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 6.00e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  630 SGTERLYYKYVNFLRYQDLNEEAIKFLNErCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLS 709
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEK-ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6319529  710 KIdEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSN 770
Cdd:COG4783  80 LA-LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 716-834 6.06e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 6.06e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  716 LKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQ 795
Cdd:COG4783  17 AGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLE 96

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 6319529  796 DALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKK 834
Cdd:COG4783  97 KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 740-854 2.31e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 2.31e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  740 YIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQNDHRVLLEIGVSFYAEA 819
Cdd:COG4783   7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                        90       100       110
                ....*....|....*....|....*....|....*
gi 6319529  820 QYETSLKWLERALKKCSRYGDTWVWLFRTYARLGK 854
Cdd:COG4783  87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 726-833 5.64e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 5.64e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  726 LDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQNDH 805
Cdd:COG4235   6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85

                        90       100
                ....*....|....*....|....*...
gi 6319529  806 RVLLEIGVSFYAEAQYETSLKWLERALK 833
Cdd:COG4235  86 EALYLLGLAAFQQGDYAEAIAAWQKLLA 113
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
643-832 6.61e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 6.61e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  643 LRYQDLNEEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIdEIDLKNPVRA 722
Cdd:COG0457  18 YRRLGRYEEAIEDY-EKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA-LQALGRYEEA 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  723 RSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQ 802
Cdd:COG0457  96 LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL 175

                       170       180       190
                ....*....|....*....|....*....|
gi 6319529  803 NDHRVLLEIGVSFYAEAQYETSLKWLERAL 832
Cdd:COG0457 176 AALLAAALGEAALALAAAEVLLALLLALEQ 205
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
715-854 7.72e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.16  E-value: 7.72e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  715 DLKNPVRARSILDRGLLKNPDD--VLFYIAKIQMeiRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKT 792
Cdd:COG0457  20 RLGRYEEAIEDYEKALELDPDDaeALYNLGLAYL--RLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6319529  793 IFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYGDTWVWLFRTYARLGK 854
Cdd:COG0457  98 DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 672-804 1.40e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 1.40e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  672 LQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIdEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLG 751
Cdd:COG4783   8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 6319529  752 NLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQND 804
Cdd:COG4783  87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 651-771 1.44e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.46  E-value: 1.44e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  651 EAIKFLNERcLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIdEIDLKNPVRARSILDRGL 730
Cdd:COG4235   1 EAIARLRQA-LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEA-LLAAGDTEEAEELLERAL 78

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 6319529  731 LKNPDDV--LFYIAKIQMEirLGNLDQAELLVTQALQKFPSNA 771
Cdd:COG4235  79 ALDPDNPeaLYLLGLAAFQ--QGDYAEAIAAWQKLLALLPADA 119
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 715-854 3.40e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.76  E-value: 3.40e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  715 DLKNPVRARSILDRGLLKNPD--DVLFYIAKIQMeiRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKT 792
Cdd:COG3914  90 ALGRYEEALALYRRALALNPDnaEALFNLGNLLL--ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6319529  793 IFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYGDTWVWLFRTYARLGK 854
Cdd:COG3914 168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 499-766 8.24e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 8.24e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  499 IAVLKKLIQWDPCDTVLWSRLKMATESYHKIEELLAFFQELLfqTKNSDDIRANMRekspgLLMMYVseywkaQKGDTRQ 578
Cdd:COG2956  28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLL--ERDPDRAEALLE-----LAQDYL------KAGLLDR 94

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  579 TLVLIDQIIDFAPHNLDLRFFKIKLLGRSLQLDELRDFFQQtfssLEDFKiSGTERLYYKYVNFLRYQDLNEEAIKFLnE 658
Cdd:COG2956  95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER----LLKLG-PENAHAYCELAELYLEQGDYDEAIEAL-E 168

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  659 RCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIDEiDLKNPVRARSILDRGLLKNPDDVL 738
Cdd:COG2956 169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE-KLGDPEEALELLRKALELDPSDDL 247

                       250       260
                ....*....|....*....|....*...
gi 6319529  739 fYIAKIQMEIRLGNLDQAELLVTQALQK 766
Cdd:COG2956 248 -LLALADLLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
733-854 1.31e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 47.69  E-value: 1.31e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  733 NPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQNDHRVLLEIG 812
Cdd:COG0457   4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 6319529  813 VSFYAEAQYETSLKWLERALKKCSRYGDTWVWLFRTYARLGK 854
Cdd:COG0457  84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 718-854 3.17e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 3.17e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  718 NPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDA 797
Cdd:COG2956  23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKL 102

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 6319529  798 LRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYGDTWVWLFRTYARLGK 854
Cdd:COG2956 103 LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGD 159
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
677-769 1.66e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 1.66e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  677 IYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIdEIDLKNPVRARSiLDRGLLKNPDDVLFYIAKIQMEIRLGNLDQA 756
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLL-LLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78

                        90
                ....*....|...
gi 6319529  757 ELLVTQALQKFPS 769
Cdd:COG3063  79 LAYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
715-855 3.37e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.98  E-value: 3.37e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  715 DLKNPVRARSILDRGLLKNpddvlfyiakiqmeiRLGNLDQAELLVTQALQKFPSNALLWVEQ-IKLFKHGNkssLKKTI 793
Cdd:COG4785  66 ALALPDLAQLYYERGVAYD---------------SLGDYDLAIADFDQALELDPDLAEAYNNRgLAYLLLGD---YDAAL 127

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6319529  794 --FQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLERALKKCSRYGDTWVWLFRTYARLGKD 855
Cdd:COG4785 128 edFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPE 191
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 633-768 3.87e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 3.87e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  633 ERLYYKYVNFLRYQDLNEEAIKFLNERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKId 712
Cdd:COG5010  19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALL- 97

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 6319529  713 EIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFP 768
Cdd:COG5010  98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 751-854 8.17e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 8.17e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  751 GNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSSLKKTIFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLKWLER 830
Cdd:COG2956  22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                        90       100
                ....*....|....*....|....
gi 6319529  831 ALKKCSRYGDTWVWLFRTYARLGK 854
Cdd:COG2956 102 LLELDPDDAEALRLLAEIYEQEGD 125
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
748-834 8.58e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 8.58e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  748 IRLGNLDQAELLVTQALQKFPSNALLWVEQIK-LFKHGNKSSLKKtiFQDALRRTQNDHRVLLEIGVSFYAEAQYETSLK 826
Cdd:COG3063   3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLlLLEQGRYDEAIA--LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                ....*...
gi 6319529  827 WLERALKK 834
Cdd:COG3063  81 YLERALEL 88
COG5191 COG5191
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ...
 201-370 9.69e-04

Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];


Pssm-ID: 227518 [Multi-domain]  Cd Length: 435  Bit Score: 42.64  E-value: 9.69e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  201 LSYLKDLENDRVNSLSDATLEDLQKMRTILKSYRKAD---PTNPQGWIASARLEEKARKFSVAKKIIENGCQECPRSSDI 277
Cdd:COG5191  64 LEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTnkfFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDL 143

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  278 WLENIRlHE----SDVHYCKTLVATAINFNPTSPLLWFKAIDLESTTVNKYRVVRKALQEIPRDEGLwKLAVSFEADKAQ 353
Cdd:COG5191 144 WIYCCA-FElfeiANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMYITKLINRREKTEILSNEIGL-DSDDKDEIERGQ 221

                       170
                ....*....|....*..
gi 6319529  354 ViKMLEKATQFIPQSMD 370
Cdd:COG5191 222 V-PFAVFADCFNSSCFT 237
COG5191 COG5191
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ...
 715-825 1.34e-03

Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];


Pssm-ID: 227518 [Multi-domain]  Cd Length: 435  Bit Score: 42.26  E-value: 1.34e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  715 DLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVE--QIKLFKHGNKSSlKKT 792
Cdd:COG5191  85 DMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYccAFELFEIANIES-SRA 163

                        90       100       110
                ....*....|....*....|....*....|...
gi 6319529  793 IFQDALRRTQNDHRVLLEIgvsFYAEAQYETSL 825
Cdd:COG5191 164 MFLKGLRMNSRSPRIWIEY---FRMELMYITKL 193
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 726-854 1.73e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 41.43  E-value: 1.73e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  726 LDRGLLKNPDDVLFYIakiQMEIRLGNLDQAELLVTQALQKFPSNALlwVEQIKLFKHGNKSSLKKTIfQDALRRTQNDH 805
Cdd:COG3071 185 LPRAERRDPELAAAYA---RALIALGDHDEAERLLREALKRQWDPRL--VRLYGRLQGGDPAKQLKRA-EKWLKKHPNDP 258

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*....
gi 6319529  806 RVLLEIGVSFYAEAQYETSLKWLERALKKCSRYgDTWVWLFRTYARLGK 854
Cdd:COG3071 259 DLLLALGRLCLRNQLWGKAREYLEAALALRPSA-EAYAELARLLEQLGD 306
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 570-700 2.78e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 2.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  570 KAQKGDTRQTLVLIDQIIDFAPHNLDLRFFKIKLLGRSLQLDELRDFFQQTFSSLEDFkisgtERLYYKYVNFLRYQDLN 649
Cdd:COG4783  14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-----PEARLNLGLALLKAGDY 88

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 6319529  650 EEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPN 700
Cdd:COG4783  89 DEALALL-EKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 609-831 4.83e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 4.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529    609 QLDELRDFFQQTFSSLEDFKISGTERLYYKYVNFlRYqdlnEEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSR 688
Cdd:TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-RF----DEARALI-DEVLTADPGNVDALLLKGDLLLSLGNIELAL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529    689 ETYLSGTRLVPNCP----LLWVSLSKIDEIDL-----------------------------KNPVRARSILDRGLLKNPD 735
Cdd:TIGR02917 214 AAYRKAIALRPNNIavllALATILIEAGEFEEaekhadallkkapnsplahylkalvdfqkKNYEDARETLQDALKSAPE 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529    736 DV-LFYIAKIQMeIRLGNLDQAELLVTQALQKFPSN--ALLWVEQIKLfKHGNKSSLKKTIfQDALRRTQNDHRVLLEIG 812
Cdd:TIGR02917 294 YLpALLLAGASE-YQLGNLEQAYQYLNQILKYAPNShqARRLLASIQL-RLGRVDEAIATL-SPALGLDPDDPAALSLLG 370

                         250
                  ....*....|....*....
gi 6319529    813 VSFYAEAQYETSLKWLERA 831
Cdd:TIGR02917 371 EAYLALGDFEKAAEYLAKA 389
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 569-708 9.03e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.59  E-value: 9.03e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  569 WKAQKGDTRQTLVLIDQIIDFAPHNLDLRFFKIKLLGRSLQLDELRDFFQQTFSSLEDFkisgtERLYYKYVNFLRYQDL 648
Cdd:COG3914  87 LLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF-----AEAYLNLGEALRRLGR 161

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6319529  649 NEEAIKFLnERCLKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSL 708
Cdd:COG3914 162 LEEAIAAL-RRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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