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Conserved domains on  [gi|398365399|ref|NP_009753|]
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Aim4p [Saccharomyces cerevisiae S288C]

Protein Classification

NpwBP domain-containing protein( domain architecture ID 10576522)

NpwBP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NpwBP pfam12622
mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif ...
 73-122 2.52e-15

mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif throughout their length. This motif is thought to be necessary for folding of the molecule as it helps to bind the WW domain, Wbp11, pfam09429. This domain together with Wbp11 may function as components of an mRNA factory in the nucleus.


:

Pssm-ID: 403727  Cd Length: 47  Bit Score: 64.66  E-value: 2.52e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 398365399   73 GIRSIFYDKDWNPRGTAPSHYRNIPYNPATFKRRTEVQARlgnLENIKIP 122
Cdd:pfam12622   1 PEKSIYYDPELNPLGKPPPGMKNIPYLEKTFKKYEPSDPL---ILNIPLP 47
 
Name Accession Description Interval E-value
NpwBP pfam12622
mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif ...
 73-122 2.52e-15

mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif throughout their length. This motif is thought to be necessary for folding of the molecule as it helps to bind the WW domain, Wbp11, pfam09429. This domain together with Wbp11 may function as components of an mRNA factory in the nucleus.


Pssm-ID: 403727  Cd Length: 47  Bit Score: 64.66  E-value: 2.52e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 398365399   73 GIRSIFYDKDWNPRGTAPSHYRNIPYNPATFKRRTEVQARlgnLENIKIP 122
Cdd:pfam12622   1 PEKSIYYDPELNPLGKPPPGMKNIPYLEKTFKKYEPSDPL---ILNIPLP 47
 
Name Accession Description Interval E-value
NpwBP pfam12622
mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif ...
 73-122 2.52e-15

mRNA biogenesis factor; The full-length Wbp11 proteins carry several copies of a PPGPPP motif throughout their length. This motif is thought to be necessary for folding of the molecule as it helps to bind the WW domain, Wbp11, pfam09429. This domain together with Wbp11 may function as components of an mRNA factory in the nucleus.


Pssm-ID: 403727  Cd Length: 47  Bit Score: 64.66  E-value: 2.52e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 398365399   73 GIRSIFYDKDWNPRGTAPSHYRNIPYNPATFKRRTEVQARlgnLENIKIP 122
Cdd:pfam12622   1 PEKSIYYDPELNPLGKPPPGMKNIPYLEKTFKKYEPSDPL---ILNIPLP 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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