NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|398366569|ref|NP_010693|]
View 

mitochondrial 54S ribosomal protein YmL41 [Saccharomyces cerevisiae S288C]

Protein Classification

uL23 family ribosomal protein( domain architecture ID 743)

uL23 family ribosomal protein such as bacteria 50S ribosomal protein L23, plant ribosomal protein L25, mitochondrial 39S ribosomal protein L23, and plastid 50S ribosomal protein L23

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L23 super family cl46680
Ribosomal protein L23;
104-166 4.63e-10

Ribosomal protein L23;


The actual alignment was detected with superfamily member pfam00276:

Pssm-ID: 459743  Cd Length: 86  Bit Score: 54.75  E-value: 4.63e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366569  104 QAKFIVPKSFNKLDLRDYLYHIYGLRAMNITTQLLHGKFNRMnlqtTRF--REPQIKKMTIEMEE 166
Cdd:pfam00276  21 KYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF----GRFvgRRSDWKKAIVTLAE 81
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
104-166 4.63e-10

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 54.75  E-value: 4.63e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366569  104 QAKFIVPKSFNKLDLRDYLYHIYGLRAMNITTQLLHGKFNRMnlqtTRF--REPQIKKMTIEMEE 166
Cdd:pfam00276  21 KYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF----GRFvgRRSDWKKAIVTLAE 81
 
Name Accession Description Interval E-value
Ribosomal_L23 pfam00276
Ribosomal protein L23;
104-166 4.63e-10

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 54.75  E-value: 4.63e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 398366569  104 QAKFIVPKSFNKLDLRDYLYHIYGLRAMNITTQLLHGKFNRMnlqtTRF--REPQIKKMTIEMEE 166
Cdd:pfam00276  21 KYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKGKVKRF----GRFvgRRSDWKKAIVTLAE 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH