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Conserved domains on  [gi|6320624|ref|NP_010704|]
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mRNA splicing protein SYF1 [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNA14 super family cl34906
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ...
 16-102 9.63e-05

Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];


The actual alignment was detected with superfamily member COG5107:

Pssm-ID: 227438 [Multi-domain]  Cd Length: 660  Bit Score: 46.17  E-value: 9.63e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320624   16 ENIRNDEdVAFEYEIQKTPQNILTWKRYIEYWKEEGRTDKqIRWLYERFCSQFVTDTSIWEDYIRWESTKEVVETSRIfw 95
Cdd:COG5107  22 DNIHGDE-LRLRERIKDNPTNILSYFQLIQYLETQESMDA-EREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVES-- 97


                ....*..
gi 6320624   96 LFQRCLK 102
Cdd:COG5107  98 LFGRCLK 104
 
Name Accession Description Interval E-value
RNA14 COG5107
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ...
 16-102 9.63e-05

Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];


Pssm-ID: 227438 [Multi-domain]  Cd Length: 660  Bit Score: 46.17  E-value: 9.63e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320624   16 ENIRNDEdVAFEYEIQKTPQNILTWKRYIEYWKEEGRTDKqIRWLYERFCSQFVTDTSIWEDYIRWESTKEVVETSRIfw 95
Cdd:COG5107  22 DNIHGDE-LRLRERIKDNPTNILSYFQLIQYLETQESMDA-EREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVES-- 97


                ....*..
gi 6320624   96 LFQRCLK 102
Cdd:COG5107  98 LFGRCLK 104
 
Name Accession Description Interval E-value
RNA14 COG5107
Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and ...
 16-102 9.63e-05

Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification];


Pssm-ID: 227438 [Multi-domain]  Cd Length: 660  Bit Score: 46.17  E-value: 9.63e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6320624   16 ENIRNDEdVAFEYEIQKTPQNILTWKRYIEYWKEEGRTDKqIRWLYERFCSQFVTDTSIWEDYIRWESTKEVVETSRIfw 95
Cdd:COG5107  22 DNIHGDE-LRLRERIKDNPTNILSYFQLIQYLETQESMDA-EREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVES-- 97


                ....*..
gi 6320624   96 LFQRCLK 102
Cdd:COG5107  98 LFGRCLK 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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