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Conserved domains on  [gi|398366617|ref|NP_010749|]
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mating pheromone a [Saccharomyces cerevisiae S288C]

Protein Classification

MFA1_2 domain-containing protein( domain architecture ID 13879682)

MFA1_2 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MFA1_2 pfam17317
Mating hormone A-factor 1_2; The polypeptides encoded by the MFa1 and MFa2 genes are ...
1-36 3.74e-14

Mating hormone A-factor 1_2; The polypeptides encoded by the MFa1 and MFa2 genes are precursors of 36 and 38 amino acids, respectively. These mating pheromones secreted by S. cerevisiae a-cells, exhibit a single amino acid residue difference (the MFa1 gene product contains a valine instead of the leucine coded for by MFa2 at position 6 of the mature a-factor). The most significant feature of the primary a-factor gene products is the presence of a specific C-terminal motif, found in all known farnesylated proteins, representing a signal for modification of polypeptides with an isoprenoid group. In the case of both a-factor precursors, this specific sequence of amino acids is -CVIA. However, the general motif is referred to as a CAAX box, since the consensus sequence of amino acids present at the C terminus of isoprenylated proteins consists of an invariable cysteine (C) residue followed by two aliphatic (A) amino acids and ending in a carboxyl-terminal residue of almost any (X) type The specific CAAX sequence has also been shown to target the peptide for either farnesylation or geranylgeranylation.


:

Pssm-ID: 407425  Cd Length: 34  Bit Score: 57.83  E-value: 3.74e-14
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 398366617   1 MQPSTAtaAPKEKTSSEKKDNYIIKGVFWDPACVIA 36
Cdd:pfam17317  1 MQPTTQ--ATQKDNSSEKKDNYIVKGYFWDPQCVIA 34
 
Name Accession Description Interval E-value
MFA1_2 pfam17317
Mating hormone A-factor 1_2; The polypeptides encoded by the MFa1 and MFa2 genes are ...
1-36 3.74e-14

Mating hormone A-factor 1_2; The polypeptides encoded by the MFa1 and MFa2 genes are precursors of 36 and 38 amino acids, respectively. These mating pheromones secreted by S. cerevisiae a-cells, exhibit a single amino acid residue difference (the MFa1 gene product contains a valine instead of the leucine coded for by MFa2 at position 6 of the mature a-factor). The most significant feature of the primary a-factor gene products is the presence of a specific C-terminal motif, found in all known farnesylated proteins, representing a signal for modification of polypeptides with an isoprenoid group. In the case of both a-factor precursors, this specific sequence of amino acids is -CVIA. However, the general motif is referred to as a CAAX box, since the consensus sequence of amino acids present at the C terminus of isoprenylated proteins consists of an invariable cysteine (C) residue followed by two aliphatic (A) amino acids and ending in a carboxyl-terminal residue of almost any (X) type The specific CAAX sequence has also been shown to target the peptide for either farnesylation or geranylgeranylation.


Pssm-ID: 407425  Cd Length: 34  Bit Score: 57.83  E-value: 3.74e-14
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 398366617   1 MQPSTAtaAPKEKTSSEKKDNYIIKGVFWDPACVIA 36
Cdd:pfam17317  1 MQPTTQ--ATQKDNSSEKKDNYIVKGYFWDPQCVIA 34
 
Name Accession Description Interval E-value
MFA1_2 pfam17317
Mating hormone A-factor 1_2; The polypeptides encoded by the MFa1 and MFa2 genes are ...
1-36 3.74e-14

Mating hormone A-factor 1_2; The polypeptides encoded by the MFa1 and MFa2 genes are precursors of 36 and 38 amino acids, respectively. These mating pheromones secreted by S. cerevisiae a-cells, exhibit a single amino acid residue difference (the MFa1 gene product contains a valine instead of the leucine coded for by MFa2 at position 6 of the mature a-factor). The most significant feature of the primary a-factor gene products is the presence of a specific C-terminal motif, found in all known farnesylated proteins, representing a signal for modification of polypeptides with an isoprenoid group. In the case of both a-factor precursors, this specific sequence of amino acids is -CVIA. However, the general motif is referred to as a CAAX box, since the consensus sequence of amino acids present at the C terminus of isoprenylated proteins consists of an invariable cysteine (C) residue followed by two aliphatic (A) amino acids and ending in a carboxyl-terminal residue of almost any (X) type The specific CAAX sequence has also been shown to target the peptide for either farnesylation or geranylgeranylation.


Pssm-ID: 407425  Cd Length: 34  Bit Score: 57.83  E-value: 3.74e-14
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 398366617   1 MQPSTAtaAPKEKTSSEKKDNYIIKGVFWDPACVIA 36
Cdd:pfam17317  1 MQPTTQ--ATQKDNSSEKKDNYIVKGYFWDPQCVIA 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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