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Conserved domains on  [gi|6320819|ref|NP_010898|]
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proteolipid ATPase [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PMP1_2 pfam08114
ATPase proteolipid family; This family consists of small proteolipids associated with the ...
 1-43 6.50e-16

ATPase proteolipid family; This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast with no modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear.


:

Pssm-ID: 285351  Cd Length: 43  Bit Score: 63.03  E-value: 6.50e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 6320819     1 MLMSTLPGGVILVFILVGLACIAIISTIIYRKWQARQRGLQRF 43
Cdd:pfam08114  1 MLMSTLPGGVILVFILVGLACIAIILTIIYRKWQARQRGLQRF 43
 
Name Accession Description Interval E-value
PMP1_2 pfam08114
ATPase proteolipid family; This family consists of small proteolipids associated with the ...
 1-43 6.50e-16

ATPase proteolipid family; This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast with no modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear.


Pssm-ID: 285351  Cd Length: 43  Bit Score: 63.03  E-value: 6.50e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 6320819     1 MLMSTLPGGVILVFILVGLACIAIISTIIYRKWQARQRGLQRF 43
Cdd:pfam08114  1 MLMSTLPGGVILVFILVGLACIAIILTIIYRKWQARQRGLQRF 43
 
Name Accession Description Interval E-value
PMP1_2 pfam08114
ATPase proteolipid family; This family consists of small proteolipids associated with the ...
 1-43 6.50e-16

ATPase proteolipid family; This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast with no modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear.


Pssm-ID: 285351  Cd Length: 43  Bit Score: 63.03  E-value: 6.50e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 6320819     1 MLMSTLPGGVILVFILVGLACIAIISTIIYRKWQARQRGLQRF 43
Cdd:pfam08114  1 MLMSTLPGGVILVFILVGLACIAIILTIIYRKWQARQRGLQRF 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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