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Conserved domains on  [gi|398364575|ref|NP_011011|]
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Arf family guanine nucleotide exchange factor SBH1 [Saccharomyces cerevisiae S288C]

Protein Classification

SEC61-beta family protein( domain architecture ID 10511259)

SEC61-beta family protein similar to Homo sapiens protein transport protein Sec61 subunit beta, which is a component of SEC61 channel-forming translocon complex that mediates transport of signal peptide-containing precursor polypeptides across endoplasmic reticulum (ER)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 38-74 2.86e-13

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


:

Pssm-ID: 427582  Cd Length: 38  Bit Score: 57.77  E-value: 2.86e-13
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 398364575  38 SILKIYSDEATGLRVDPLVVLFLAVGFIFSVVALHVI 74
Cdd:pfam03911  1 GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHIL 37
 
Name Accession Description Interval E-value
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 38-74 2.86e-13

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


Pssm-ID: 427582  Cd Length: 38  Bit Score: 57.77  E-value: 2.86e-13
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 398364575  38 SILKIYSDEATGLRVDPLVVLFLAVGFIFSVVALHVI 74
Cdd:pfam03911  1 GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHIL 37
 
Name Accession Description Interval E-value
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 38-74 2.86e-13

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


Pssm-ID: 427582  Cd Length: 38  Bit Score: 57.77  E-value: 2.86e-13
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 398364575  38 SILKIYSDEATGLRVDPLVVLFLAVGFIFSVVALHVI 74
Cdd:pfam03911  1 GLLRYYEEDAPGIKIDPKVVLVLSLAFIASVILLHIL 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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