NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6321580|ref|NP_011657|]
View 

Vps62p [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Vps62 super family cl05569
Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) ...
 202-297 5.81e-05

Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins.


The actual alignment was detected with superfamily member pfam06101:

Pssm-ID: 461828  Cd Length: 539  Bit Score: 45.30  E-value: 5.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321580    202 AFWFyFYPFNwGPYIMGSGPW-------GNHVGDWEHSLVRF--YKGEPQYLWMSAHGGGS---AYKFEAIEKikrlrrv 269
Cdd:pfam06101 339 AMWI-FCPFN-GPATLKVGLIniplgkiGEHVGDWEHFTLRIsnFTGELWSVYFSQHSGGEwvdASDLEFIEG------- 409

                          90       100
                  ....*....|....*....|....*...
gi 6321580    270 dgkltneviKKPLIFSARGTHAHYASVG 297
Cdd:pfam06101 410 ---------NKPVVYSSLHGHASYPKPG 428
 
Name Accession Description Interval E-value
Vps62 pfam06101
Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) ...
 202-297 5.81e-05

Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins.


Pssm-ID: 461828  Cd Length: 539  Bit Score: 45.30  E-value: 5.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321580    202 AFWFyFYPFNwGPYIMGSGPW-------GNHVGDWEHSLVRF--YKGEPQYLWMSAHGGGS---AYKFEAIEKikrlrrv 269
Cdd:pfam06101 339 AMWI-FCPFN-GPATLKVGLIniplgkiGEHVGDWEHFTLRIsnFTGELWSVYFSQHSGGEwvdASDLEFIEG------- 409

                          90       100
                  ....*....|....*....|....*...
gi 6321580    270 dgkltneviKKPLIFSARGTHAHYASVG 297
Cdd:pfam06101 410 ---------NKPVVYSSLHGHASYPKPG 428
 
Name Accession Description Interval E-value
Vps62 pfam06101
Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) ...
 202-297 5.81e-05

Vacuolar protein sorting-associated protein 62; Vps62 is a vacuolar protein sorting (VPS) protein required for cytoplasm to vacuole targeting of proteins.


Pssm-ID: 461828  Cd Length: 539  Bit Score: 45.30  E-value: 5.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6321580    202 AFWFyFYPFNwGPYIMGSGPW-------GNHVGDWEHSLVRF--YKGEPQYLWMSAHGGGS---AYKFEAIEKikrlrrv 269
Cdd:pfam06101 339 AMWI-FCPFN-GPATLKVGLIniplgkiGEHVGDWEHFTLRIsnFTGELWSVYFSQHSGGEwvdASDLEFIEG------- 409

                          90       100
                  ....*....|....*....|....*...
gi 6321580    270 dgkltneviKKPLIFSARGTHAHYASVG 297
Cdd:pfam06101 410 ---------NKPVVYSSLHGHASYPKPG 428
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH