ribosomal 60S subunit protein L27A [Saccharomyces cerevisiae S288C]
KOW domain-containing RNA-binding protein( domain architecture ID 55)
KOW domain-containing RNA-binding protein similar to the KOW motif in 60S ribosomal protein L27, which is a component of the large ribosomal subunit; the KOW domain is known as an RNA-binding motif that is shared among some families of ribosomal proteins
List of domain hits
Name | Accession | Description | Interval | E-value | |||
KOW super family | cl00354 | KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is known ... |
1-136 | 1.83e-44 | |||
KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. The KOW motif contains an invariants glycine residue and comprises alternating blocks of hydrophilic and hydrophobic residues. The actual alignment was detected with superfamily member PTZ00471: Pssm-ID: 469738 [Multi-domain] Cd Length: 134 Bit Score: 141.91 E-value: 1.83e-44
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Name | Accession | Description | Interval | E-value | |||
PTZ00471 | PTZ00471 | 60S ribosomal protein L27; Provisional |
1-136 | 1.83e-44 | |||
60S ribosomal protein L27; Provisional Pssm-ID: 240428 [Multi-domain] Cd Length: 134 Bit Score: 141.91 E-value: 1.83e-44
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KOW_RPL27 | cd06090 | KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW ... |
6-88 | 1.40e-43 | |||
KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. Pssm-ID: 240514 Cd Length: 83 Bit Score: 137.70 E-value: 1.40e-43
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Ribosomal_L27e | pfam01777 | Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the ... |
52-136 | 4.05e-40 | |||
Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. Pssm-ID: 460322 Cd Length: 85 Bit Score: 129.23 E-value: 4.05e-40
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Name | Accession | Description | Interval | E-value | |||
PTZ00471 | PTZ00471 | 60S ribosomal protein L27; Provisional |
1-136 | 1.83e-44 | |||
60S ribosomal protein L27; Provisional Pssm-ID: 240428 [Multi-domain] Cd Length: 134 Bit Score: 141.91 E-value: 1.83e-44
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KOW_RPL27 | cd06090 | KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW ... |
6-88 | 1.40e-43 | |||
KOW motif of eukaryotic Ribosomal Protein L27; RPL27e has a KOW motif at its N terminal. KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. Pssm-ID: 240514 Cd Length: 83 Bit Score: 137.70 E-value: 1.40e-43
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Ribosomal_L27e | pfam01777 | Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the ... |
52-136 | 4.05e-40 | |||
Ribosomal L27e protein family; The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. Pssm-ID: 460322 Cd Length: 85 Bit Score: 129.23 E-value: 4.05e-40
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KOW | cd00380 | KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is known ... |
8-62 | 4.26e-05 | |||
KOW: an acronym for the authors' surnames (Kyrpides, Ouzounis and Woese); KOW domain is known as an RNA-binding motif that is shared so far among some families of ribosomal proteins, the essential bacterial transcriptional elongation factor NusG, the eukaryotic chromatin elongation factor Spt5, the higher eukaryotic KIN17 proteins and Mtr4. The KOW motif contains an invariants glycine residue and comprises alternating blocks of hydrophilic and hydrophobic residues. Pssm-ID: 240504 Cd Length: 49 Bit Score: 38.74 E-value: 4.26e-05
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Blast search parameters | ||||
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