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Conserved domains on  [gi|398364989|ref|NP_012948|]
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Rqt4p [Saccharomyces cerevisiae S288C]

Protein Classification

C2HC5-type zinc finger protein( domain architecture ID 10533278)

C2HC5-type zinc finger protein similar to Saccharomyces cerevisiae RQC trigger complex subunit RQT4

Gene Ontology:  GO:0008270
PubMed:  12665246|17210253

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-C2HC5 pfam06221
Putative zinc finger motif, C2HC5-type; This zinc finger appears to be common in activating ...
 173-227 1.66e-24

Putative zinc finger motif, C2HC5-type; This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4.


:

Pssm-ID: 428833  Cd Length: 54  Bit Score: 96.19  E-value: 1.66e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 398364989  173 SKNCNCQGTRHPVFDIAPNCLHCGKVVCVIEGLNkGKCGHCHEQLISDNERTQMV 227
Cdd:pfam06221   1 RRKCNCQARRHPLFEAAPNCLNCGKIICAKEGLH-GPCSFCGSPLLSPEERQELI 54
 
Name Accession Description Interval E-value
zf-C2HC5 pfam06221
Putative zinc finger motif, C2HC5-type; This zinc finger appears to be common in activating ...
 173-227 1.66e-24

Putative zinc finger motif, C2HC5-type; This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4.


Pssm-ID: 428833  Cd Length: 54  Bit Score: 96.19  E-value: 1.66e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 398364989  173 SKNCNCQGTRHPVFDIAPNCLHCGKVVCVIEGLNkGKCGHCHEQLISDNERTQMV 227
Cdd:pfam06221   1 RRKCNCQARRHPLFEAAPNCLNCGKIICAKEGLH-GPCSFCGSPLLSPEERQELI 54
 
Name Accession Description Interval E-value
zf-C2HC5 pfam06221
Putative zinc finger motif, C2HC5-type; This zinc finger appears to be common in activating ...
 173-227 1.66e-24

Putative zinc finger motif, C2HC5-type; This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4.


Pssm-ID: 428833  Cd Length: 54  Bit Score: 96.19  E-value: 1.66e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 398364989  173 SKNCNCQGTRHPVFDIAPNCLHCGKVVCVIEGLNkGKCGHCHEQLISDNERTQMV 227
Cdd:pfam06221   1 RRKCNCQARRHPLFEAAPNCLNCGKIICAKEGLH-GPCSFCGSPLLSPEERQELI 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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