Cms1p [Saccharomyces cerevisiae S288C]
Protein Classification
P-loop NTPase family protein( domain architecture ID 1562424)
P-loop NTPase (nucleoside triphosphate hydrolase) family protein contains two conserved sequence signatures, the Walker A motif (the P-loop proper) and Walker B motif which bind, respectively, the beta and gamma phosphate moieties of the bound nucleotide (typically ATP or GTP), and a Mg(2+) cation
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| P-loop_NTPase super family | cl38936 | P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain ... |
102-264 | 6.84e-14 | ||||
P-loop containing Nucleoside Triphosphate Hydrolases; Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a hydrophobic residue). The Walker A and B motifs bind the beta-gamma phosphate moiety of the bound nucleotide (typically ATP or GTP) and the Mg2+ cation, respectively. The P-loop NTPases are involved in diverse cellular functions, and they can be divided into two major structural classes: the KG (kinase-GTPase) class which includes Ras-like GTPases and its circularly permutated YlqF-like; and the ASCE (additional strand catalytic E) class which includes ATPase Binding Cassette (ABC), DExD/H-like helicases, 4Fe-4S iron sulfur cluster binding proteins of NifH family, RecA-like F1-ATPases, and ATPases Associated with a wide variety of Activities (AAA). Also included are a diverse set of nucleotide/nucleoside kinase families. The actual alignment was detected with superfamily member pfam14617: Pssm-ID: 476819 Cd Length: 250 Bit Score: 69.89 E-value: 6.84e-14
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| Name | Accession | Description | Interval | E-value | ||||
| CMS1 | pfam14617 | U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant ... |
102-264 | 6.84e-14 | ||||
U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant CMS1-like proteins. The family has similarity to the DEAD-box helicases. Pssm-ID: 373164 Cd Length: 250 Bit Score: 69.89 E-value: 6.84e-14
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| Name | Accession | Description | Interval | E-value | ||||
| CMS1 | pfam14617 | U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant ... |
102-264 | 6.84e-14 | ||||
U3-containing 90S pre-ribosomal complex subunit; This is a family of fungal and plant CMS1-like proteins. The family has similarity to the DEAD-box helicases. Pssm-ID: 373164 Cd Length: 250 Bit Score: 69.89 E-value: 6.84e-14
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| Blast search parameters | ||||
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