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Conserved domains on  [gi|6323049|ref|NP_013121|]
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Irc25p [Saccharomyces cerevisiae S288C]

Protein Classification

POC3_POC4 domain-containing protein( domain architecture ID 10564532)

POC3_POC4 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
POC3_POC4 pfam10448
20S proteasome chaperone assembly proteins 3 and 4; This family contains chaperones of the 20S ...
1-174 1.00e-39

20S proteasome chaperone assembly proteins 3 and 4; This family contains chaperones of the 20S proteasome which function in early 20S proteasome assembly. The structures of two of the proteins in this family (POC3 and POC4) have been solved, and they closely resemble those of the mammalian proteasome assembling chaperone PAC3, although there is little sequence similarity between them.


:

Pssm-ID: 402192  Cd Length: 136  Bit Score: 131.40  E-value: 1.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323049      1 MISYEFQTHLPKGKDSSLnasSENKELYVQATHFNNTILLQIRLNGEMDSTYEVSSKGLnpilDINVPLAgnlgntggdy 80
Cdd:pfam10448   1 MIVRTIQKTLESLSGSFT---SLDVEVAIHAIHYSNKIPISIRINGEMDTTFESSSSGL----LINYVYA---------- 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323049     81 ddeeeEFVRDHLSDYQVVTKLGDSADPKVPVVCVQIAELYRRVILPEVsgtmaqdnmqfslLISMSSKIWRATKeqsADD 160
Cdd:pfam10448  64 -----ISVSDKLSDVVVVVLLGTSSDMKIDIVARQIARLLVKKYNPPC-------------YVTISSKWWRGTL---DQA 122
                         170
                  ....*....|....
gi 6323049    161 NDFGKLVFVLKCIK 174
Cdd:pfam10448 123 SDFEKLMFVLECIK 136
 
Name Accession Description Interval E-value
POC3_POC4 pfam10448
20S proteasome chaperone assembly proteins 3 and 4; This family contains chaperones of the 20S ...
1-174 1.00e-39

20S proteasome chaperone assembly proteins 3 and 4; This family contains chaperones of the 20S proteasome which function in early 20S proteasome assembly. The structures of two of the proteins in this family (POC3 and POC4) have been solved, and they closely resemble those of the mammalian proteasome assembling chaperone PAC3, although there is little sequence similarity between them.


Pssm-ID: 402192  Cd Length: 136  Bit Score: 131.40  E-value: 1.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323049      1 MISYEFQTHLPKGKDSSLnasSENKELYVQATHFNNTILLQIRLNGEMDSTYEVSSKGLnpilDINVPLAgnlgntggdy 80
Cdd:pfam10448   1 MIVRTIQKTLESLSGSFT---SLDVEVAIHAIHYSNKIPISIRINGEMDTTFESSSSGL----LINYVYA---------- 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323049     81 ddeeeEFVRDHLSDYQVVTKLGDSADPKVPVVCVQIAELYRRVILPEVsgtmaqdnmqfslLISMSSKIWRATKeqsADD 160
Cdd:pfam10448  64 -----ISVSDKLSDVVVVVLLGTSSDMKIDIVARQIARLLVKKYNPPC-------------YVTISSKWWRGTL---DQA 122
                         170
                  ....*....|....
gi 6323049    161 NDFGKLVFVLKCIK 174
Cdd:pfam10448 123 SDFEKLMFVLECIK 136
 
Name Accession Description Interval E-value
POC3_POC4 pfam10448
20S proteasome chaperone assembly proteins 3 and 4; This family contains chaperones of the 20S ...
1-174 1.00e-39

20S proteasome chaperone assembly proteins 3 and 4; This family contains chaperones of the 20S proteasome which function in early 20S proteasome assembly. The structures of two of the proteins in this family (POC3 and POC4) have been solved, and they closely resemble those of the mammalian proteasome assembling chaperone PAC3, although there is little sequence similarity between them.


Pssm-ID: 402192  Cd Length: 136  Bit Score: 131.40  E-value: 1.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323049      1 MISYEFQTHLPKGKDSSLnasSENKELYVQATHFNNTILLQIRLNGEMDSTYEVSSKGLnpilDINVPLAgnlgntggdy 80
Cdd:pfam10448   1 MIVRTIQKTLESLSGSFT---SLDVEVAIHAIHYSNKIPISIRINGEMDTTFESSSSGL----LINYVYA---------- 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323049     81 ddeeeEFVRDHLSDYQVVTKLGDSADPKVPVVCVQIAELYRRVILPEVsgtmaqdnmqfslLISMSSKIWRATKeqsADD 160
Cdd:pfam10448  64 -----ISVSDKLSDVVVVVLLGTSSDMKIDIVARQIARLLVKKYNPPC-------------YVTISSKWWRGTL---DQA 122
                         170
                  ....*....|....
gi 6323049    161 NDFGKLVFVLKCIK 174
Cdd:pfam10448 123 SDFEKLMFVLECIK 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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