|
Name |
Accession |
Description |
Interval |
E-value |
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
1-595 |
0e+00 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 788.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 1 MPTVSVNKQQLFDLLgkNYTsqEFDELCFEFGMEmdEDTTEEALKTGeePELKLDISANRYDLLCIEGISQSLNEYLERK 80
Cdd:TIGR00471 1 MPTVTVYKDDLEDLL--IGT--DRDEILEELPMM--GDEIEGFDEES--PEIKVEFNPNRPDLLSVEGLARSLRGYLGIE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 81 ERPDYKLSKPT-TKLIIDKSTEQIRPFATAAVLRNIKLNEKSYASFIALQDKLHANLCRNRSLVAMGTHDLDSIEGPFHY 159
Cdd:TIGR00471 73 KGLKSYDSKKGdVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 160 RALPPKDIKFVPLNQTQEFTGDKLIEfykspEQKNNIgRYVHIIEDSPVFPVIMDSKDRVCSLPPLINSEHSKISVNTRN 239
Cdd:TIGR00471 153 KAVSPNGIKFVPLNSDQEMTPDEILE-----EHPKGI-RYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 240 ILIDITATDKTKAEIVLNILTTMFSRYCDEPFTVEPVEIVSEHNGQSRLAPNFndriMDVSIKYINSCLGLDQSADEIAH 319
Cdd:TIGR00471 227 LLIDVTGTDKTAVEITLNIACTMFADRGDGRITVVEVERPDEHLGQPNLAPRF----MEVSVEYINSLLGLNLSADEIAH 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 320 CLKKMSLHAVQSKEdkdILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKGEKLSNANFIAKPLpiNKVSDIFRVASSQ 399
Cdd:TIGR00471 303 SLKKMRLDAVQSDE---KLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPL--NKVSDIIREIMVG 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 400 ATWVEVLPLTLCSHDENFKFLRQSDNGDlaVKLANPKTLEYQVVRTTLLPGILKTVKENRKHSLPIKVFETGDVVFKDDK 479
Cdd:TIGR00471 378 LGFQEVIPLTLTSEEVNFKRMRIEDNND--VKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDK 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 480 LErkaYNERHWAAIYVGKNSGFeiiqgllgkiMQTFRTEWIADYGAAASGRGYWIEEDDsVKTYFPGRGAKVMFRSkega 559
Cdd:TIGR00471 456 SE---TRSRVVTKLAVGITHSE----------ANFNEIKSIVAALARELGIEYEIEESE-HPSFIPGRGAKIVFEG---- 517
|
570 580 590
....*....|....*....|....*....|....*.
gi 6323089 560 epKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVFL 595
Cdd:TIGR00471 518 --KAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-595 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 742.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 1 MPTVSVNKQQLFDLLGKNYTSQEFDELCFEFGMEMDEDTTEEALKT------GEEPEL---------KLDISANRYDLLC 65
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRkekhldEEEDGGadddeeviyKIDVPANRYDLLC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 66 IEGISQSLNEYLERKERPDYKLSKPTT----KLIIDKSTEQIRPFATAAVLRNIKLNEKSYASFIALQDKLHANLCRNRS 141
Cdd:PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKgsilKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 142 LVAMGTHDLDSIEGPFHYRALPPKDIKFVPLNQTQEFTGDKLIEFYKSpEQKnnIGRYVHIIEDSPVFPVIMDSKDRVCS 221
Cdd:PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKS-DMK--LKKFLHIIENSPVFPVIYDSNRTVLS 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 222 LPPLINSEHSKISVNTRNILIDITATDKTKAEIVLNILTTMFSRYCDEPFTVEPVEIVSeHNGQSRLAPNFNDRIMDVSI 301
Cdd:PLN02265 238 LPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVY-PDGKSTVYPDLSVRTMEVDL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 302 KYINSCLGLDQSADEIAHCLKKMSLHAVQSKEDKDILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKgeKLSNANFIA 381
Cdd:PLN02265 317 SYINSSIGVSLDAEEVASLLNKMQLQAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPK--RKPKSMTVG 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 382 KPLPINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKH 461
Cdd:PLN02265 395 KQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDA 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 462 SLPIKVFETGDVVFKDDKLERKAYNERHWAAIYVGKNSGFEIIQGLLGKIMQTFRTEWIADYgaaaSGRGYWIEEDDSvK 541
Cdd:PLN02265 475 PKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIG----DNNGYYVEPSNE-P 549
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 6323089 542 TYFPGRGAKVMFRskegaePKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVFL 595
Cdd:PLN02265 550 EYFPGRQASIIYK------GKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
385-594 |
1.67e-43 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 153.95 E-value: 1.67e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 385 PINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFlrqSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKHS-L 463
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAELF---DGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 464 PIKVFETGDVVFKDDKLERkayNERHWAAIYVGK-----------NSGFEIIQGLLGKIMQTFRTewiadygaaasGRGY 532
Cdd:cd00769 78 PLRLFEIGRVFLKDEDGPE---EEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRALGI-----------IVEF 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6323089 533 WIEEDDSVkTYFPGRGAKVMFrskegaEPKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVF 594
Cdd:cd00769 144 ELEELDAD-LFHPGRSAKIYV------NGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
381-590 |
2.80e-42 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 151.16 E-value: 2.80e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 381 AKPLPINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFLRQSDNGDlAVKLANPKTLEYQVVRTTLLPGILKTVKENRK 460
Cdd:pfam17759 13 GGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKLLEDDPRRK-AVKLANPLSEELSVMRTSLLPGLLETLAYNLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 461 HSLP-IKVFETGDVVFKDDkLERKAYNERHWAAIYVGK-----------NSGFEIIQGLLGKIMQTFRTEwiadygaaas 528
Cdd:pfam17759 92 RGNPdVRLFEIGRVFLPDE-LEELPREPRRLAGLLTGKrlpeswqgkarPVDFYDLKGIVEALLAALGID---------- 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6323089 529 grGYWIEEDDsVKTYFPGRGAKVMFRSKEgaepkqIGHLGVLHPEVMMNFDVPFAASFVEVN 590
Cdd:pfam17759 161 --DYEFEAAD-HPALHPGRSAEILVGGKV------IGFIGELHPEVAKNFDLPQPVYVFELD 213
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
104-268 |
4.94e-29 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 113.12 E-value: 4.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 104 RPFATAAVLRNIKLNeksYASFIALQDKLHANLCRNRSlVAMGTHDLDSIEGPFHYRALPPKDI--KFVPLNQTQEftGD 181
Cdd:smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPIN-NVVDITNYVSLETGQPLHAFDLDKIkgKDIPLRRAKE--GE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 182 KLIEFYKSPEqknNIGRYVHIIEDsPVFPVIM-----------DSKDRVCSLPPLINSEHS-KISVNTRNILIDITA--- 246
Cdd:smart00873 75 KFETLDGKEY---ELDEGDLVIAD-DEGPLALagvmggeesevTENTTVIFLEPAIFSPRTiRITARTLNLFTDASGrfe 150
|
170 180
....*....|....*....|....
gi 6323089 247 --TDKTKAEIVLNILTTMFSRYCD 268
Cdd:smart00873 151 rgVDPELVELALDRAAALLLEICG 174
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
298-595 |
9.00e-24 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 106.40 E-value: 9.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 298 DVSIKYINSCLGLDQSADEIAHCLKkmSLHAvQSKEDKDILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPkgEKLSNA 377
Cdd:COG0072 406 TLRLARINRLLGVEIPAEEIEEILE--RLGF-EVEEDGDGLTVTVPSWRFDIEIEADLIEEVARIYGYDNIP--STLPRA 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 378 NFIAKPLP-----INKVSDIFRVASsqatWVEVLPLTLCSHDENFKFlrqsDNGDLAVKLANPKTLEYQVVRTTLLPGIL 452
Cdd:COG0072 481 PLAGGGLTeaqrlRRRVRRALAARG----YQEVITYSFVSPEDADLF----GLRREAVRLANPISEDLSVMRTSLLPGLL 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 453 KTVKENRKHSLP-IKVFETGDVVFKDDKLERK-----------AYNERHWAA------IYVGKnsgfEIIQGLLGKImqt 514
Cdd:COG0072 553 EAAAYNLNRGQKdVRLFEIGRVFLPDEGEEPReplhlagvltgNREPESWGGkarpvdFFDLK----GDVEALLAAL--- 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 515 frteWIADYGAAASGRGYWIeeddsvktyfPGRGAKVMFrskegaEPKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVF 594
Cdd:COG0072 626 ----GVPKLEFEAAEHPALH----------PGRSAEILL------GGKVIGFIGELHPKVLKALDLPGPVYVFELDLDAL 685
|
.
gi 6323089 595 L 595
Cdd:COG0072 686 L 686
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
1-595 |
0e+00 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 788.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 1 MPTVSVNKQQLFDLLgkNYTsqEFDELCFEFGMEmdEDTTEEALKTGeePELKLDISANRYDLLCIEGISQSLNEYLERK 80
Cdd:TIGR00471 1 MPTVTVYKDDLEDLL--IGT--DRDEILEELPMM--GDEIEGFDEES--PEIKVEFNPNRPDLLSVEGLARSLRGYLGIE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 81 ERPDYKLSKPT-TKLIIDKSTEQIRPFATAAVLRNIKLNEKSYASFIALQDKLHANLCRNRSLVAMGTHDLDSIEGPFHY 159
Cdd:TIGR00471 73 KGLKSYDSKKGdVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 160 RALPPKDIKFVPLNQTQEFTGDKLIEfykspEQKNNIgRYVHIIEDSPVFPVIMDSKDRVCSLPPLINSEHSKISVNTRN 239
Cdd:TIGR00471 153 KAVSPNGIKFVPLNSDQEMTPDEILE-----EHPKGI-RYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRN 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 240 ILIDITATDKTKAEIVLNILTTMFSRYCDEPFTVEPVEIVSEHNGQSRLAPNFndriMDVSIKYINSCLGLDQSADEIAH 319
Cdd:TIGR00471 227 LLIDVTGTDKTAVEITLNIACTMFADRGDGRITVVEVERPDEHLGQPNLAPRF----MEVSVEYINSLLGLNLSADEIAH 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 320 CLKKMSLHAVQSKEdkdILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKGEKLSNANFIAKPLpiNKVSDIFRVASSQ 399
Cdd:TIGR00471 303 SLKKMRLDAVQSDE---KLKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPL--NKVSDIIREIMVG 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 400 ATWVEVLPLTLCSHDENFKFLRQSDNGDlaVKLANPKTLEYQVVRTTLLPGILKTVKENRKHSLPIKVFETGDVVFKDDK 479
Cdd:TIGR00471 378 LGFQEVIPLTLTSEEVNFKRMRIEDNND--VKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDK 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 480 LErkaYNERHWAAIYVGKNSGFeiiqgllgkiMQTFRTEWIADYGAAASGRGYWIEEDDsVKTYFPGRGAKVMFRSkega 559
Cdd:TIGR00471 456 SE---TRSRVVTKLAVGITHSE----------ANFNEIKSIVAALARELGIEYEIEESE-HPSFIPGRGAKIVFEG---- 517
|
570 580 590
....*....|....*....|....*....|....*.
gi 6323089 560 epKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVFL 595
Cdd:TIGR00471 518 --KAIGHFGEIHPEVLTNFELEFPVSAFEVNIEVFL 551
|
|
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-595 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 742.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 1 MPTVSVNKQQLFDLLGKNYTSQEFDELCFEFGMEMDEDTTEEALKT------GEEPEL---------KLDISANRYDLLC 65
Cdd:PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRkekhldEEEDGGadddeeviyKIDVPANRYDLLC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 66 IEGISQSLNEYLERKERPDYKLSKPTT----KLIIDKSTEQIRPFATAAVLRNIKLNEKSYASFIALQDKLHANLCRNRS 141
Cdd:PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKgsilKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 142 LVAMGTHDLDSIEGPFHYRALPPKDIKFVPLNQTQEFTGDKLIEFYKSpEQKnnIGRYVHIIEDSPVFPVIMDSKDRVCS 221
Cdd:PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKS-DMK--LKKFLHIIENSPVFPVIYDSNRTVLS 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 222 LPPLINSEHSKISVNTRNILIDITATDKTKAEIVLNILTTMFSRYCDEPFTVEPVEIVSeHNGQSRLAPNFNDRIMDVSI 301
Cdd:PLN02265 238 LPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVY-PDGKSTVYPDLSVRTMEVDL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 302 KYINSCLGLDQSADEIAHCLKKMSLHAVQSKEDKDILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKgeKLSNANFIA 381
Cdd:PLN02265 317 SYINSSIGVSLDAEEVASLLNKMQLQAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPK--RKPKSMTVG 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 382 KPLPINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKH 461
Cdd:PLN02265 395 KQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDA 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 462 SLPIKVFETGDVVFKDDKLERKAYNERHWAAIYVGKNSGFEIIQGLLGKIMQTFRTEWIADYgaaaSGRGYWIEEDDSvK 541
Cdd:PLN02265 475 PKPIKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIG----DNNGYYVEPSNE-P 549
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 6323089 542 TYFPGRGAKVMFRskegaePKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVFL 595
Cdd:PLN02265 550 EYFPGRQASIIYK------GKHVGTFGIVHPEVLNNFDIPDPCSFLELDLEPLL 597
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
385-594 |
1.67e-43 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 153.95 E-value: 1.67e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 385 PINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFlrqSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKHS-L 463
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEEAELF---DGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 464 PIKVFETGDVVFKDDKLERkayNERHWAAIYVGK-----------NSGFEIIQGLLGKIMQTFRTewiadygaaasGRGY 532
Cdd:cd00769 78 PLRLFEIGRVFLKDEDGPE---EEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRALGI-----------IVEF 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6323089 533 WIEEDDSVkTYFPGRGAKVMFrskegaEPKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVF 594
Cdd:cd00769 144 ELEELDAD-LFHPGRSAKIYV------NGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
381-590 |
2.80e-42 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 151.16 E-value: 2.80e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 381 AKPLPINKVSDIFRVASSQATWVEVLPLTLCSHDENFKFLRQSDNGDlAVKLANPKTLEYQVVRTTLLPGILKTVKENRK 460
Cdd:pfam17759 13 GGLTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKDLDKLLEDDPRRK-AVKLANPLSEELSVMRTSLLPGLLETLAYNLN 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 461 HSLP-IKVFETGDVVFKDDkLERKAYNERHWAAIYVGK-----------NSGFEIIQGLLGKIMQTFRTEwiadygaaas 528
Cdd:pfam17759 92 RGNPdVRLFEIGRVFLPDE-LEELPREPRRLAGLLTGKrlpeswqgkarPVDFYDLKGIVEALLAALGID---------- 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6323089 529 grGYWIEEDDsVKTYFPGRGAKVMFRSKEgaepkqIGHLGVLHPEVMMNFDVPFAASFVEVN 590
Cdd:pfam17759 161 --DYEFEAAD-HPALHPGRSAEILVGGKV------IGFIGELHPEVAKNFDLPQPVYVFELD 213
|
|
| PhetRS_B1 |
pfam18262 |
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human ... |
1-79 |
3.08e-30 |
|
Phe-tRNA synthetase beta subunit B1 domain; This is the N-terminal domain found in human cytosolic phenylalanyl tRNA synthetase beta subunit.
Pssm-ID: 408077 Cd Length: 83 Bit Score: 113.67 E-value: 3.08e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 1 MPTVSVNKQQLFDLLGKNYTSQEFDELCFEFGMEMDEDTTEEALKTG----EEPELKLDISANRYDLLCIEGISQSLNEY 76
Cdd:pfam18262 1 MPTISVKKVRLFKVLGRVYTEEEFSDLCFEFGLELDEITSEENQLKTswrsEEVVYKIDIPANRYDLLCVEGLATALLIF 80
|
...
gi 6323089 77 LER 79
Cdd:pfam18262 81 KGK 83
|
|
| pheT |
PRK00629 |
phenylalanyl-tRNA synthetase subunit beta; Reviewed |
211-595 |
2.74e-29 |
|
phenylalanyl-tRNA synthetase subunit beta; Reviewed
Pssm-ID: 234804 [Multi-domain] Cd Length: 791 Bit Score: 123.36 E-value: 2.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 211 VIMDSKdRVCSLPPLINSEHSKISVNTRNILI--------DITAT------------------DKTKAEIVLNILTTMFS 264
Cdd:PRK00629 302 VIADDK-KPLALAGVMGGEDSEVTENTTNVLLesayfdpvSIRKTarrlglrtdasyrfergvDPALTLLALERATALIL 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 265 RYCDEpftvEPVEIVSEHNgqsrlaPNFNDRIMDVSIKYINSCLGLDQSADEIAHCLKKmsLHAVQSKEDKDILHVDIPV 344
Cdd:PRK00629 381 ELGGG----EVVEGVVDVY------PLPKEPTITLRLERINRLLGTEISDEEIVDILKR--LGFEVTEVDGDGLTVTVPS 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 345 TRPDILHACDIMEDAAVGYGFNNLPkgEKLSNANFIAKPLPINKVSdiFRVASSQATW---VEVLPLTLCSHDENFKFlr 421
Cdd:PRK00629 449 WRFDIEIEEDLVEEVARIYGYDNIP--STPPVAALTMGGLTEAQRL--LRRLRRALAAlgyQEVITYSFVSPEDAKLF-- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 422 qsDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKHSLP-IKVFETGDVVFKDDKL--ERK--------AYNERHW 490
Cdd:PRK00629 523 --GLNPEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKdVALFEIGRVFLPDGDLprEPEhlagvltgNRVEESW 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 491 AAiyvGKNSGF----EIIQGLLGKIMQTFRTewiadygaaasgrgywIEEDDSVKTYFPGRGAKVMFRSKEgaepkqIGH 566
Cdd:PRK00629 601 GG---KRPVDFfdlkGDVEALLEALGLPEVE----------------FVAEFEAAALHPGRSAEIYLDGKV------IGF 655
|
410 420
....*....|....*....|....*....
gi 6323089 567 LGVLHPEVMMNFDVPFAASFVEVNAEVFL 595
Cdd:PRK00629 656 IGELHPKVLKKLDLPGRTYVFELDLDALL 684
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
104-268 |
4.94e-29 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 113.12 E-value: 4.94e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 104 RPFATAAVLRNIKLNeksYASFIALQDKLHANLCRNRSlVAMGTHDLDSIEGPFHYRALPPKDI--KFVPLNQTQEftGD 181
Cdd:smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPIN-NVVDITNYVSLETGQPLHAFDLDKIkgKDIPLRRAKE--GE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 182 KLIEFYKSPEqknNIGRYVHIIEDsPVFPVIM-----------DSKDRVCSLPPLINSEHS-KISVNTRNILIDITA--- 246
Cdd:smart00873 75 KFETLDGKEY---ELDEGDLVIAD-DEGPLALagvmggeesevTENTTVIFLEPAIFSPRTiRITARTLNLFTDASGrfe 150
|
170 180
....*....|....*....|....
gi 6323089 247 --TDKTKAEIVLNILTTMFSRYCD 268
Cdd:smart00873 151 rgVDPELVELALDRAAALLLEICG 174
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
298-595 |
9.00e-24 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 106.40 E-value: 9.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 298 DVSIKYINSCLGLDQSADEIAHCLKkmSLHAvQSKEDKDILHVDIPVTRPDILHACDIMEDAAVGYGFNNLPkgEKLSNA 377
Cdd:COG0072 406 TLRLARINRLLGVEIPAEEIEEILE--RLGF-EVEEDGDGLTVTVPSWRFDIEIEADLIEEVARIYGYDNIP--STLPRA 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 378 NFIAKPLP-----INKVSDIFRVASsqatWVEVLPLTLCSHDENFKFlrqsDNGDLAVKLANPKTLEYQVVRTTLLPGIL 452
Cdd:COG0072 481 PLAGGGLTeaqrlRRRVRRALAARG----YQEVITYSFVSPEDADLF----GLRREAVRLANPISEDLSVMRTSLLPGLL 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 453 KTVKENRKHSLP-IKVFETGDVVFKDDKLERK-----------AYNERHWAA------IYVGKnsgfEIIQGLLGKImqt 514
Cdd:COG0072 553 EAAAYNLNRGQKdVRLFEIGRVFLPDEGEEPReplhlagvltgNREPESWGGkarpvdFFDLK----GDVEALLAAL--- 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 515 frteWIADYGAAASGRGYWIeeddsvktyfPGRGAKVMFrskegaEPKQIGHLGVLHPEVMMNFDVPFAASFVEVNAEVF 594
Cdd:COG0072 626 ----GVPKLEFEAAEHPALH----------PGRSAEILL------GGKVIGFIGELHPKVLKALDLPGPVYVFELDLDAL 685
|
.
gi 6323089 595 L 595
Cdd:COG0072 686 L 686
|
|
| pheT_bact |
TIGR00472 |
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of ... |
52-590 |
8.15e-21 |
|
phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273097 [Multi-domain] Cd Length: 797 Bit Score: 96.98 E-value: 8.15e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 52 LKLDISANRYDLLCIEGISQSLNEYLERKERPDYKLSKPTT-----KLIIDKSTEQIRPFATAAVLRNIKLNEksyaSFI 126
Cdd:TIGR00472 159 IEVSITPNRGDCLSILGIARELAALFDLNLETPVPFEPETTetideGFKIEIEDPEVCPFYLGRVIKGVKVKP----SPL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 127 ALQDKLHANLCR---------NRSLVAMG--TH--DLDSIEGPFHYRALppKDI-KFVPLNQtqeftgdkliefyKSPEQ 192
Cdd:TIGR00472 235 WLKERLRRSGIRpinnivditNYVMLELGqpLHafDADKIEGNIVVRSA--KEGeSFTTLDG-------------KEREL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 193 KNNIgryvhiiedspvfPVIMDSKDRVCsLPPLINSEHSKISVNTRNILI--------DITAT----------------- 247
Cdd:TIGR00472 300 KKGD-------------LVIADDKKPLA-IAGVMGGKESGVTDTTTNIFLesayfnpeSIRKTarrlgistdssyrferg 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 248 -DKTKAEIVLNILTTMFSRYCDEPftVEPVEIVSEHngqsrlAPNFNDRIMdVSIKYINSCLGLDQSADEIAHCLKKMSL 326
Cdd:TIGR00472 366 vDPELTELALDRALNLILEIFGGE--VISVVSDNYK------EKAKEKKIS-LRIKKLNKILGIELSDEEVRDILKRLGF 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 327 HAVQSKEDkdiLHVDIPVTRPDILHACDIMEDAAVGYGFNNLPKgEKLSNANFIAK----PLPINKVSDIFRVASSQatw 402
Cdd:TIGR00472 437 KVEKQKDG---WEVTVPSYRHDIEIEEDLIEEIARIYGYDNIPA-EPLSVSSKLNKnnenYLLLRKLRTLLVGLGLN--- 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 403 vEVLPLTLCSHDENFKFLrqSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKHSLP-IKVFETGDVVFKDDKLE 481
Cdd:TIGR00472 510 -EVITYSFVDPEKAEKFN--FPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKdVKIFEIGKVFAKDGEAV 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 482 R----------KAYNERHWAAiyVGKNSGFEIIQGLLGKIMQTFRTEWIADYGAAASGRGywieeddsvktYFPGRGAKV 551
Cdd:TIGR00472 587 KeqlrlailisGEKNPSSWNH--KEEKVDFYDLKGDVESLLELLGLSDDVYFKNTAENEE-----------LHPGQSATI 653
|
570 580 590
....*....|....*....|....*....|....*....
gi 6323089 552 MFrskegaEPKQIGHLGVLHPEVMMNFDVPFAASFVEVN 590
Cdd:TIGR00472 654 YL------KGKKIGFIGELHPEIAKKYDLKEPTFVFELD 686
|
|
| B5 |
pfam03484 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
297-365 |
6.99e-20 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 460942 [Multi-domain] Cd Length: 67 Bit Score: 83.60 E-value: 6.99e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 6323089 297 MDVSIKYINSCLGLDQSADEIAHCLKKMSLHAVqsKEDKDILHVDIPVTRPDILHACDIMEDAAVGYGF 365
Cdd:pfam03484 1 ITLRLDRINRLLGIDLSAEEIVEILERLGFEVE--EEDGDTLTVTVPSYRPDILHEADLIEEVARIYGY 67
|
|
| B5 |
smart00874 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
295-365 |
6.05e-18 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 197942 [Multi-domain] Cd Length: 68 Bit Score: 78.31 E-value: 6.05e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6323089 295 RIMDVSIKYINSCLGLDQSADEIAHCLKKMSLHAVqskEDKDILHVDIPVTRPDILHACDIMEDAAVGYGF 365
Cdd:smart00874 1 RTITLRLERINRLLGLEILAEEIEEILKRLGFEVE---VSGDTLEVTVPSYRFDILIEADLIEEVARIYGY 68
|
|
| B3_4 |
pfam03483 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
103-267 |
5.24e-16 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 427327 [Multi-domain] Cd Length: 174 Bit Score: 76.05 E-value: 5.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 103 IRPFATAAVLRNIKLNEKS---------------YASFIALQDKLHANLCRnrslvAMGTHDLDSIEGPFHYRALPPKDi 167
Cdd:pfam03483 1 ACPRYFGRVIRGVKKNRPSpewlqrrlrragirpINNVVDITNYVMLELGQ-----PLHAFDLDKIAGDIVVRLAKGGE- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 168 KFVPLNQTQeftgdkliefykspeqknnigryvhiIEDSPVFPVIMDSkDRVCSLPPLINSEHSKISVNTRNILIDITA- 246
Cdd:pfam03483 75 KFTTLDGKE--------------------------RELDPGDLVIADD-DGPVALAGIMGGEESEVTEDTTNIFLESAGf 127
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 6323089 247 -------------------------TDKTKAEIVLNILTTMFSRYC 267
Cdd:pfam03483 128 dpvairktarrlglrtdasyrfergVDPELVEAALDRATALLLELC 173
|
|
| syfB |
CHL00192 |
phenylalanyl-tRNA synthetase beta chain; Provisional |
42-473 |
1.33e-11 |
|
phenylalanyl-tRNA synthetase beta chain; Provisional
Pssm-ID: 214391 [Multi-domain] Cd Length: 704 Bit Score: 67.42 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 42 EALKTGEEPELKLDIS--ANRYDLLCIEGISQSLNEYLERKERpDYKLSKPTtkliIDKSTEqirpFATAAVLRNIKLNE 119
Cdd:CHL00192 37 LSVKIGGESDIILDISstANRSDVLSIQGLSREISALFNSDPI-KLKYYNPS----ISWFDK----LKNLISNDSSKLNC 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 120 KSYASFIA--LQDKLHANLCRNRsLVAMGTHDLDSIEGPFHYRALPP-KDIKFVPLNQTQeftgDKLIEFYKSPEQKNNI 196
Cdd:CHL00192 108 SMFIAVIIenIEIKDSPKWLQNR-LSSSGFKSLNNLTDIQNYIMLETgQPIEIYDLDKIY----SKNTTSSLALSSKFAL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 197 GRYVHIIEDSPVFPV-----IMDSKDRVCSLPPLINSEHSKISVNTRNILIDITATDK---TKAEIVLNILTTMFSRYCD 268
Cdd:CHL00192 183 QKSSFIASNSKNIELennilVVQANNVIISIAGIISNEEIICDKNTKSILIEASIFDAaviRKSSRKLGLRTDRSIRYEK 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 269 -------EPFTVEPVEIVSEHNGQSRLAPNF-------NDRIMDVSIKYINSCLGLDQ--------SADEIAHCLKKMSL 326
Cdd:CHL00192 263 slkndnlLEAYYRLVSLLRILNPKLKCKFHFiykkiknSSRRIKLSYKKIKDILGPIKintntrylSPKEITNALKRLNF 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 327 HaVQSKEDKDILHVDIPVTRP-DILHACDIMEDAAVGYGFNN----LPKGEKLSNANFIAKPlpINKVSDIFRVassqat 401
Cdd:CHL00192 343 K-ITYDSLKLNWEVLIPSYRKdDIVREIDVIEEIARIYGFNNflskLPNIKFIGRLDIDYNT--RDKIRSYLRN------ 413
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6323089 402 wvevLPLTLCSHdenFKFLRQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKHS-LPIKVFETGDV 473
Cdd:CHL00192 414 ----LGLTELIH---YSLVKQESFSKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGnSTLEGFEIGHV 479
|
|
| B3/B4 |
COG3382 |
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only] ... |
140-268 |
6.35e-06 |
|
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only];
Pssm-ID: 442609 [Multi-domain] Cd Length: 233 Bit Score: 47.54 E-value: 6.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6323089 140 RSLVAMGTHDLDSIEGPFHYRaLPPKDIKFVPLNQTQEftgdkliefykspeqknnigryVHIIEDSPVFpviMDSKDRV 219
Cdd:COG3382 111 RYLLPIGGYDLDKIEGDLRLR-LARGGESFLPIGGDEE----------------------EPPEPGEVVY---ADDEGVF 164
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 6323089 220 CSLPPLINSEHSKISVNTRNILIDITATDKTKAEIVLNI---LTTMFSRYCD 268
Cdd:COG3382 165 CRRWPWRDSERTKVTEETKNALFIIEGLPGVSAEDLEAAldeLAELLERYLG 216
|
|
| |
