NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6323318|ref|NP_013390|]
View 

ribosomal 40S subunit protein S30A [Saccharomyces cerevisiae S288C]

Protein Classification

eS30 family ribosomal protein( domain architecture ID 10520706)

eS30 family ribosomal protein is synthesized as a C-terminal extension protein (CEP) of a ubiquitin-like protein

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803|29401259

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-60 6.21e-18

Ribosomal protein S30;


:

Pssm-ID: 398432  Cd Length: 58  Bit Score: 69.22  E-value: 6.21e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 6323318     3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTlVNGKRRMNPGP 60
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVV-PGGGRKKGPNS 57
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-60 6.21e-18

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 69.22  E-value: 6.21e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 6323318     3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTlVNGKRRMNPGP 60
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVV-PGGGRKKGPNS 57
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 1-60 3.06e-11

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 52.46  E-value: 3.06e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6323318    1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKR-RMNPGP 60
Cdd:PTZ00467  1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKvHMNKQP 61
RPS30 COG4919
Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 ...
 5-45 1.94e-03

Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443947  Cd Length: 52  Bit Score: 32.29  E-value: 1.94e-03
                       10        20        30        40
               ....*....|....*....|....*....|....*....|.
gi 6323318   5 HGSLARAGKVKSQTPKVEKTEKPKKPKgRAYKRLLYTRRFV 45
Cdd:COG4919  4 HGSLTKAGKVRSQTPKIPAKPRKNPPP-RVRNRREYRKRFV 43
 
Name Accession Description Interval E-value
Ribosomal_S30 pfam04758
Ribosomal protein S30;
3-60 6.21e-18

Ribosomal protein S30;


Pssm-ID: 398432  Cd Length: 58  Bit Score: 69.22  E-value: 6.21e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 6323318     3 KVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTlVNGKRRMNPGP 60
Cdd:pfam04758  1 KVHGSLARAGKVRNQTPKVEKQEKKKKPTGRAKKRLQYNRRFVNVV-PGGGRKKGPNS 57
PTZ00467 PTZ00467
40S ribosomal protein S30; Provisional
 1-60 3.06e-11

40S ribosomal protein S30; Provisional


Pssm-ID: 185646  Cd Length: 66  Bit Score: 52.46  E-value: 3.06e-11
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 6323318    1 MAKVHGSLARAGKVKSQTPKVEKTEKPKKPKGRAYKRLLYTRRFVNVTLVNGKR-RMNPGP 60
Cdd:PTZ00467  1 MGKIHGSLARAGKVKNQTPKVAKQEKPKQPRGRALKRLKYTRRFLAKTVKPGEKvHMNKQP 61
RPS30 COG4919
Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 ...
 5-45 1.94e-03

Ribosomal protein S30 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S30 is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 443947  Cd Length: 52  Bit Score: 32.29  E-value: 1.94e-03
                       10        20        30        40
               ....*....|....*....|....*....|....*....|.
gi 6323318   5 HGSLARAGKVKSQTPKVEKTEKPKKPKgRAYKRLLYTRRFV 45
Cdd:COG4919  4 HGSLTKAGKVRSQTPKIPAKPRKNPPP-RVRNRREYRKRFV 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH