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Conserved domains on  [gi|6323347|ref|NP_013419|]
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Nkp2p [Saccharomyces cerevisiae S288C]

Protein Classification

Cnl2/NKP2 family protein( domain architecture ID 10559590)

Cnl2/NKP2 family protein is a component of the kinetochore, a multiprotein complex that assembles on centromeric DNA and attaches chromosomes to spindle microtubules, mediating chromosome segregation and sister chromatid segregation during meiosis and mitosis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cnl2_NKP2 pfam09447
Cnl2/NKP2 family protein; This family includes the Cnl2 kinetochore protein.
 3-66 7.05e-11

Cnl2/NKP2 family protein; This family includes the Cnl2 kinetochore protein.


:

Pssm-ID: 430618  Cd Length: 65  Bit Score: 54.51  E-value: 7.05e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6323347      3 SEQLLHNY-VSDSLLTTLISFQEFKQQLQSYTSDEQQLQHWYELLQARDARVTSELEARIKQFFI 66
Cdd:pfam09447   1 ESQILSNFlLSPSPLPDIISLEQFTKLFPRRLRSSPQIRTLYRDLQRQRAAVLDTVRANIEQEVK 65
 
Name Accession Description Interval E-value
Cnl2_NKP2 pfam09447
Cnl2/NKP2 family protein; This family includes the Cnl2 kinetochore protein.
 3-66 7.05e-11

Cnl2/NKP2 family protein; This family includes the Cnl2 kinetochore protein.


Pssm-ID: 430618  Cd Length: 65  Bit Score: 54.51  E-value: 7.05e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6323347      3 SEQLLHNY-VSDSLLTTLISFQEFKQQLQSYTSDEQQLQHWYELLQARDARVTSELEARIKQFFI 66
Cdd:pfam09447   1 ESQILSNFlLSPSPLPDIISLEQFTKLFPRRLRSSPQIRTLYRDLQRQRAAVLDTVRANIEQEVK 65
 
Name Accession Description Interval E-value
Cnl2_NKP2 pfam09447
Cnl2/NKP2 family protein; This family includes the Cnl2 kinetochore protein.
 3-66 7.05e-11

Cnl2/NKP2 family protein; This family includes the Cnl2 kinetochore protein.


Pssm-ID: 430618  Cd Length: 65  Bit Score: 54.51  E-value: 7.05e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 6323347      3 SEQLLHNY-VSDSLLTTLISFQEFKQQLQSYTSDEQQLQHWYELLQARDARVTSELEARIKQFFI 66
Cdd:pfam09447   1 ESQILSNFlLSPSPLPDIISLEQFTKLFPRRLRSSPQIRTLYRDLQRQRAAVLDTVRANIEQEVK 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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