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Conserved domains on  [gi|6324547|ref|NP_014616|]
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Mim1p [Saccharomyces cerevisiae S288C]

Protein Classification

TOM13-domain-containing protein( domain architecture ID 10548581)

TOM13-domain-containing protein such as mitochondrial import protein 1 (MIM1), a component of the MIM complex required for mitochondrial outer membrane protein import

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TOM13 pfam08219
Outer membrane protein TOM13; The TOM13 family of proteins are mitochondrial outer membrane ...
 14-91 1.15e-32

Outer membrane protein TOM13; The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins.


:

Pssm-ID: 400499  Cd Length: 82  Bit Score: 109.31  E-value: 1.15e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324547     14 DESEDKDCMEVQNTVSADESPLVQSLV--------SFVGSCSINLLLPFLNGMMLGFGELFAHELCWRFNWFnhrnkGYK 85
Cdd:pfam08219   2 DSEQYSSLIANEELPSSSPSSSSSPVIiyqpptvwSLLRGAAINLVLPFINGLMLGFGELFAHEAAFRLGWS-----GTK 76


                  ....*.
gi 6324547     86 VYPESR 91
Cdd:pfam08219  77 VFPESR 82
 
Name Accession Description Interval E-value
TOM13 pfam08219
Outer membrane protein TOM13; The TOM13 family of proteins are mitochondrial outer membrane ...
 14-91 1.15e-32

Outer membrane protein TOM13; The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins.


Pssm-ID: 400499  Cd Length: 82  Bit Score: 109.31  E-value: 1.15e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324547     14 DESEDKDCMEVQNTVSADESPLVQSLV--------SFVGSCSINLLLPFLNGMMLGFGELFAHELCWRFNWFnhrnkGYK 85
Cdd:pfam08219   2 DSEQYSSLIANEELPSSSPSSSSSPVIiyqpptvwSLLRGAAINLVLPFINGLMLGFGELFAHEAAFRLGWS-----GTK 76


                  ....*.
gi 6324547     86 VYPESR 91
Cdd:pfam08219  77 VFPESR 82
 
Name Accession Description Interval E-value
TOM13 pfam08219
Outer membrane protein TOM13; The TOM13 family of proteins are mitochondrial outer membrane ...
 14-91 1.15e-32

Outer membrane protein TOM13; The TOM13 family of proteins are mitochondrial outer membrane proteins that mediate the assembly of beta-barrel proteins.


Pssm-ID: 400499  Cd Length: 82  Bit Score: 109.31  E-value: 1.15e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6324547     14 DESEDKDCMEVQNTVSADESPLVQSLV--------SFVGSCSINLLLPFLNGMMLGFGELFAHELCWRFNWFnhrnkGYK 85
Cdd:pfam08219   2 DSEQYSSLIANEELPSSSPSSSSSPVIiyqpptvwSLLRGAAINLVLPFINGLMLGFGELFAHEAAFRLGWS-----GTK 76


                  ....*.
gi 6324547     86 VYPESR 91
Cdd:pfam08219  77 VFPESR 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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