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Conserved domains on  [gi|398366451|ref|NP_015032|]
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uncharacterized protein YOR387C [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Vel1p super family cl11008
Yeast-specific zinc responsive; This is a small family of proteins from Saccharomyces and ...
6-205 7.63e-99

Yeast-specific zinc responsive; This is a small family of proteins from Saccharomyces and related species. The function is not known but member proteins are highly induced in zinc-depleted conditions and have increased expression in NAP1-deletion mutants. The S. cerevisiae genes are named VEL by association with Velum formation in the wine making process http://www.ajevonline.org/content/48/1/55.abstract


The actual alignment was detected with superfamily member pfam10339:

Pssm-ID: 402107  Cd Length: 202  Bit Score: 284.84  E-value: 7.63e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366451    6 IFTFFSVLVSV-ATAVRFDLTNVTCNNLHGPHCGTYVMEVVGQNGTFLGQSTFAGADVLTESAGDAWARYLGQETRFLPK 84
Cdd:pfam10339   1 LLLFITLILSTsVAAFRFDLTNVTCSRLHGPHCGTYLLKVAGTNATYLGQKYFVGADALANDAEDAWGRLLEQEPRFIPR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366451   85 LTTIASNDTKNFSPLIFTTNIYTCNPQSIGDAMVPFANTVTGEIEYNSWADTADNASFITGLANQLFNSTQYGVQVASCY 164
Cdd:pfam10339  81 LTTVATNDTGNFRPFVFTTNMSTCNPQSIENAMIPFVNTVTNEISYDSWAYTAMNASAITGLANQLMNASTYGVQVATCN 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 398366451  165 PNFASVILSTPTVNIFAANETLPDYCTAIQLKAVCPPDAGF 205
Cdd:pfam10339 161 PGFITDLFDSPTVNIFNNEETLPSWCEAIELEAVCPLDVGF 201
 
Name Accession Description Interval E-value
Vel1p pfam10339
Yeast-specific zinc responsive; This is a small family of proteins from Saccharomyces and ...
6-205 7.63e-99

Yeast-specific zinc responsive; This is a small family of proteins from Saccharomyces and related species. The function is not known but member proteins are highly induced in zinc-depleted conditions and have increased expression in NAP1-deletion mutants. The S. cerevisiae genes are named VEL by association with Velum formation in the wine making process http://www.ajevonline.org/content/48/1/55.abstract


Pssm-ID: 402107  Cd Length: 202  Bit Score: 284.84  E-value: 7.63e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366451    6 IFTFFSVLVSV-ATAVRFDLTNVTCNNLHGPHCGTYVMEVVGQNGTFLGQSTFAGADVLTESAGDAWARYLGQETRFLPK 84
Cdd:pfam10339   1 LLLFITLILSTsVAAFRFDLTNVTCSRLHGPHCGTYLLKVAGTNATYLGQKYFVGADALANDAEDAWGRLLEQEPRFIPR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366451   85 LTTIASNDTKNFSPLIFTTNIYTCNPQSIGDAMVPFANTVTGEIEYNSWADTADNASFITGLANQLFNSTQYGVQVASCY 164
Cdd:pfam10339  81 LTTVATNDTGNFRPFVFTTNMSTCNPQSIENAMIPFVNTVTNEISYDSWAYTAMNASAITGLANQLMNASTYGVQVATCN 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 398366451  165 PNFASVILSTPTVNIFAANETLPDYCTAIQLKAVCPPDAGF 205
Cdd:pfam10339 161 PGFITDLFDSPTVNIFNNEETLPSWCEAIELEAVCPLDVGF 201
 
Name Accession Description Interval E-value
Vel1p pfam10339
Yeast-specific zinc responsive; This is a small family of proteins from Saccharomyces and ...
6-205 7.63e-99

Yeast-specific zinc responsive; This is a small family of proteins from Saccharomyces and related species. The function is not known but member proteins are highly induced in zinc-depleted conditions and have increased expression in NAP1-deletion mutants. The S. cerevisiae genes are named VEL by association with Velum formation in the wine making process http://www.ajevonline.org/content/48/1/55.abstract


Pssm-ID: 402107  Cd Length: 202  Bit Score: 284.84  E-value: 7.63e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366451    6 IFTFFSVLVSV-ATAVRFDLTNVTCNNLHGPHCGTYVMEVVGQNGTFLGQSTFAGADVLTESAGDAWARYLGQETRFLPK 84
Cdd:pfam10339   1 LLLFITLILSTsVAAFRFDLTNVTCSRLHGPHCGTYLLKVAGTNATYLGQKYFVGADALANDAEDAWGRLLEQEPRFIPR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 398366451   85 LTTIASNDTKNFSPLIFTTNIYTCNPQSIGDAMVPFANTVTGEIEYNSWADTADNASFITGLANQLFNSTQYGVQVASCY 164
Cdd:pfam10339  81 LTTVATNDTGNFRPFVFTTNMSTCNPQSIENAMIPFVNTVTNEISYDSWAYTAMNASAITGLANQLMNASTYGVQVATCN 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 398366451  165 PNFASVILSTPTVNIFAANETLPDYCTAIQLKAVCPPDAGF 205
Cdd:pfam10339 161 PGFITDLFDSPTVNIFNNEETLPSWCEAIELEAVCPLDVGF 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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