NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6325073|ref|NP_015141|]
View 

putative mitochondrial 54S ribosomal protein RTC6 [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
56-93 3.75e-18

Ribosomal protein L36;


:

Pssm-ID: 459811  Cd Length: 38  Bit Score: 70.62  E-value: 3.75e-18
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 6325073    56 FKVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG 93
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
56-93 3.75e-18

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 70.62  E-value: 3.75e-18
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 6325073    56 FKVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG 93
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 57-93 7.85e-17

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 67.07  E-value: 7.85e-17
                       10        20        30
               ....*....|....*....|....*....|....*..
gi 6325073  57 KVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG 93
Cdd:COG0257  2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 57-93 7.63e-12

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 54.57  E-value: 7.63e-12
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 6325073   57 KVRTSVKKFCSDCYLVRRKGRVYIYCKsNKKHKQRQG 93
Cdd:PRK00465  2 KVRASVKKICEKCKVIKRKGVVRVICE-NPKHKQRQG 37
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 57-93 2.07e-08

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 45.94  E-value: 2.07e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 6325073    57 KVRTSVKKFCSDCYLVRRKGRVYIYCKsNKKHKQRQG 93
Cdd:TIGR01022  2 KVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37
 
Name Accession Description Interval E-value
Ribosomal_L36 pfam00444
Ribosomal protein L36;
56-93 3.75e-18

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 70.62  E-value: 3.75e-18
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 6325073    56 FKVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG 93
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 57-93 7.85e-17

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 67.07  E-value: 7.85e-17
                       10        20        30
               ....*....|....*....|....*....|....*..
gi 6325073  57 KVRTSVKKFCSDCYLVRRKGRVYIYCKSNKKHKQRQG 93
Cdd:COG0257  2 KVRASVKKICRDCKVVRRKGRVYVICKKNPRHKQRQG 38
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 57-93 7.63e-12

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 54.57  E-value: 7.63e-12
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 6325073   57 KVRTSVKKFCSDCYLVRRKGRVYIYCKsNKKHKQRQG 93
Cdd:PRK00465  2 KVRASVKKICEKCKVIKRKGVVRVICE-NPKHKQRQG 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 57-93 2.24e-09

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 48.45  E-value: 2.24e-09
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 6325073   57 KVRTSVKKFCS---DCYLVRRKGRVYIYCKSNKKHKQRQG 93
Cdd:PRK00831  2 KVRNSLKSLKNrhrDCQVVRRKGRVYVINKKNPRFKARQG 41
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 57-93 2.07e-08

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 45.94  E-value: 2.07e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 6325073    57 KVRTSVKKFCSDCYLVRRKGRVYIYCKsNKKHKQRQG 93
Cdd:TIGR01022  2 KVRASVKKICEKCKIIKRKGVVRVICK-NPKHKQRQG 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH