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Conserved domains on  [gi|6325167|ref|NP_015235|]
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ribosomal 40S subunit protein S6A [Saccharomyces cerevisiae S288C]

Protein Classification

eS6 family ribosomal protein( domain architecture ID 2736)

eS6 family ribosomal protein such as archaeal 30S ribosomal protein S6e and yeast 40S ribosomal protein S6

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_S6e super family cl00931
Ribosomal protein S6e;
1-220 9.16e-100

Ribosomal protein S6e;


The actual alignment was detected with superfamily member PTZ00028:

Pssm-ID: 469996  Cd Length: 218  Bit Score: 289.02  E-value: 9.16e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167     1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKN 80
Cdd:PTZ00028   1 MKLNIANPFTGLQKCIEIDDEKKLLPFFEKRIGAEVPGDSLGDEFKGYIFKISGGNDKQGFPMMQGVLTNNRVRLLFRKG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167    81 VSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRR 160
Cdd:PTZ00028  81 MKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFVVRR 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167   161 EVTKGEKtyTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERK 220
Cdd:PTZ00028 161 KIEGKNK--TKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEKR 218
 
Name Accession Description Interval E-value
PTZ00028 PTZ00028
40S ribosomal protein S6e; Provisional
1-220 9.16e-100

40S ribosomal protein S6e; Provisional


Pssm-ID: 185404  Cd Length: 218  Bit Score: 289.02  E-value: 9.16e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167     1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKN 80
Cdd:PTZ00028   1 MKLNIANPFTGLQKCIEIDDEKKLLPFFEKRIGAEVPGDSLGDEFKGYIFKISGGNDKQGFPMMQGVLTNNRVRLLFRKG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167    81 VSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRR 160
Cdd:PTZ00028  81 MKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFVVRR 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167   161 EVTKGEKtyTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERK 220
Cdd:PTZ00028 161 KIEGKNK--TKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEKR 218
Ribosomal_S6e pfam01092
Ribosomal protein S6e;
2-126 1.31e-66

Ribosomal protein S6e;


Pssm-ID: 460060  Cd Length: 123  Bit Score: 201.54  E-value: 1.31e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167      2 KLNISYPVNGSQKTFEIDdEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNV 81
Cdd:pfam01092   1 KLVISDPKTGKQKQIEID-GQKARRFYGKRIGDEVDGDALGDELKGYKLKITGGSDKQGFPMRQGVLGPGRVRLLLSGGV 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 6325167     82 sCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTD 126
Cdd:pfam01092  80 -GYRPRRDGERRRKSVRGCIVSDDISQLNLKVVKKGEKDIPGLTD 123
RPS6A COG2125
Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]; Ribosomal ...
2-124 7.05e-31

Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6E (S10) is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441728  Cd Length: 133  Bit Score: 110.68  E-value: 7.05e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167    2 KLNISYPVNGSQKTFEIDDEHRIRvFFDKRIGQEVDGEAVGdeFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNV 81
Cdd:COG2125   5 KVVVSDPKTGKSYQIEVKGQDANR-LIGKKIGDEVDGSAVG--LPGYKLEITGGSDKSGFPMRPDLPGPGRKRILLSGGV 81
                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 6325167   82 ScYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGL 124
Cdd:COG2125  82 G-FKPKRDGERRRKTVRGNEISDDIVQINAKVVEYGEKPLEEL 123
 
Name Accession Description Interval E-value
PTZ00028 PTZ00028
40S ribosomal protein S6e; Provisional
1-220 9.16e-100

40S ribosomal protein S6e; Provisional


Pssm-ID: 185404  Cd Length: 218  Bit Score: 289.02  E-value: 9.16e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167     1 MKLNISYPVNGSQKTFEIDDEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKN 80
Cdd:PTZ00028   1 MKLNIANPFTGLQKCIEIDDEKKLLPFFEKRIGAEVPGDSLGDEFKGYIFKISGGNDKQGFPMMQGVLTNNRVRLLFRKG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167    81 VSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRR 160
Cdd:PTZ00028  81 MKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFVVRR 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167   161 EVTKGEKtyTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERK 220
Cdd:PTZ00028 161 KIEGKNK--TKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEKR 218
Ribosomal_S6e pfam01092
Ribosomal protein S6e;
2-126 1.31e-66

Ribosomal protein S6e;


Pssm-ID: 460060  Cd Length: 123  Bit Score: 201.54  E-value: 1.31e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167      2 KLNISYPVNGSQKTFEIDdEHRIRVFFDKRIGQEVDGEAVGDEFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNV 81
Cdd:pfam01092   1 KLVISDPKTGKQKQIEID-GQKARRFYGKRIGDEVDGDALGDELKGYKLKITGGSDKQGFPMRQGVLGPGRVRLLLSGGV 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 6325167     82 sCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTD 126
Cdd:pfam01092  80 -GYRPRRDGERRRKSVRGCIVSDDISQLNLKVVKKGEKDIPGLTD 123
RPS6A COG2125
Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]; Ribosomal ...
2-124 7.05e-31

Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]; Ribosomal protein S6E (S10) is part of the Pathway/BioSystem: Archaeal ribosomal proteins


Pssm-ID: 441728  Cd Length: 133  Bit Score: 110.68  E-value: 7.05e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167    2 KLNISYPVNGSQKTFEIDDEHRIRvFFDKRIGQEVDGEAVGdeFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNV 81
Cdd:COG2125   5 KVVVSDPKTGKSYQIEVKGQDANR-LIGKKIGDEVDGSAVG--LPGYKLEITGGSDKSGFPMRPDLPGPGRKRILLSGGV 81
                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 6325167   82 ScYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGL 124
Cdd:COG2125  82 G-FKPKRDGERRRKTVRGNEISDDIVQINAKVVEYGEKPLEEL 123
PRK04290 PRK04290
30S ribosomal protein S6e; Validated
2-115 2.17e-26

30S ribosomal protein S6e; Validated


Pssm-ID: 235271  Cd Length: 115  Bit Score: 98.38  E-value: 2.17e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6325167     2 KLNISYPVNGSQKTFEIDDEhRIRVFFDKRIGQEVDGEAVGdeFKGYVFKISGGNDKQGFPMKQGVLLPTRIKLLLTKNV 81
Cdd:PRK04290   5 KVVVSDPKTGKAYQIEIDGA-EANRLIGKKIGDEIDGSIVG--LDGYKLKITGGSDKSGFPMRPDVPGPVRRRILLSGGP 81
                         90       100       110
                 ....*....|....*....|....*....|....
gi 6325167    82 ScYRPRRDGERKRKSVRGAIVGPDLAVLALVIVK 115
Cdd:PRK04290  82 G-FRPKEKGERRRKTVRGNTISDDIVQINAKVVE 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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