NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6325250|ref|NP_015318|]
View 

transcription factor TFIIIC subunit TFC8 [Saccharomyces cerevisiae S288C]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-TFIIIC super family cl15018
Putative zinc-finger of transcription factor IIIC complex; This zinc-finger domain is at the ...
 515-585 4.29e-11

Putative zinc-finger of transcription factor IIIC complex; This zinc-finger domain is at the very C-terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions.


The actual alignment was detected with superfamily member pfam12660:

Pssm-ID: 372246  Cd Length: 87  Bit Score: 59.40  E-value: 4.29e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6325250    515 DPETVTSTTNNTWKRCGVTLLPILTTHV-KICPVSKQRVIDIKRDDLNDYGWFTRgLLERFNEiSVYCGTTL 585
Cdd:pfam12660  18 SLTEAQCTEGHIWARCGLTFLAIQEPGIsKVCSVCSTEYLDEELVARNEKSLLRI-LLEAFDT-CIYCGGKF 87
 
Name Accession Description Interval E-value
zf-TFIIIC pfam12660
Putative zinc-finger of transcription factor IIIC complex; This zinc-finger domain is at the ...
 515-585 4.29e-11

Putative zinc-finger of transcription factor IIIC complex; This zinc-finger domain is at the very C-terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions.


Pssm-ID: 372246  Cd Length: 87  Bit Score: 59.40  E-value: 4.29e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6325250    515 DPETVTSTTNNTWKRCGVTLLPILTTHV-KICPVSKQRVIDIKRDDLNDYGWFTRgLLERFNEiSVYCGTTL 585
Cdd:pfam12660  18 SLTEAQCTEGHIWARCGLTFLAIQEPGIsKVCSVCSTEYLDEELVARNEKSLLRI-LLEAFDT-CIYCGGKF 87
 
Name Accession Description Interval E-value
zf-TFIIIC pfam12660
Putative zinc-finger of transcription factor IIIC complex; This zinc-finger domain is at the ...
 515-585 4.29e-11

Putative zinc-finger of transcription factor IIIC complex; This zinc-finger domain is at the very C-terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions.


Pssm-ID: 372246  Cd Length: 87  Bit Score: 59.40  E-value: 4.29e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6325250    515 DPETVTSTTNNTWKRCGVTLLPILTTHV-KICPVSKQRVIDIKRDDLNDYGWFTRgLLERFNEiSVYCGTTL 585
Cdd:pfam12660  18 SLTEAQCTEGHIWARCGLTFLAIQEPGIsKVCSVCSTEYLDEELVARNEKSLLRI-LLEAFDT-CIYCGGKF 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH