nucleoporin NUP42 isoform 2 [Homo sapiens]
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
4-22 | 3.75e-06 | ||||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. : Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 43.17 E-value: 3.75e-06
|
||||||||
PPE super family | cl35037 | PPE-repeat protein [Function unknown]; |
202-389 | 6.65e-06 | ||||
PPE-repeat protein [Function unknown]; The actual alignment was detected with superfamily member COG5651: Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 47.97 E-value: 6.65e-06
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
4-22 | 3.75e-06 | ||||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 43.17 E-value: 3.75e-06
|
||||||||
PPE | COG5651 | PPE-repeat protein [Function unknown]; |
202-389 | 6.65e-06 | ||||
PPE-repeat protein [Function unknown]; Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 47.97 E-value: 6.65e-06
|
||||||||
ZnF_C3H1 | smart00356 | zinc finger; |
1-23 | 8.79e-06 | ||||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 42.23 E-value: 8.79e-06
|
||||||||
KREPA2 | cd23959 | Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
217-348 | 1.60e-04 | ||||
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex. Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 43.70 E-value: 1.60e-04
|
||||||||
PRK13875 | PRK13875 | conjugal transfer protein TrbL; Provisional |
255-350 | 2.86e-03 | ||||
conjugal transfer protein TrbL; Provisional Pssm-ID: 237537 Cd Length: 440 Bit Score: 39.89 E-value: 2.86e-03
|
||||||||
Name | Accession | Description | Interval | E-value | ||||
zf_CCCH_4 | pfam18345 | Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ... |
4-22 | 3.75e-06 | ||||
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process. Pssm-ID: 465719 [Multi-domain] Cd Length: 19 Bit Score: 43.17 E-value: 3.75e-06
|
||||||||
PPE | COG5651 | PPE-repeat protein [Function unknown]; |
202-389 | 6.65e-06 | ||||
PPE-repeat protein [Function unknown]; Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 47.97 E-value: 6.65e-06
|
||||||||
ZnF_C3H1 | smart00356 | zinc finger; |
1-23 | 8.79e-06 | ||||
zinc finger; Pssm-ID: 214632 [Multi-domain] Cd Length: 27 Bit Score: 42.23 E-value: 8.79e-06
|
||||||||
zf-CCCH_4 | pfam18044 | CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and ... |
3-23 | 1.44e-04 | ||||
CCCH-type zinc finger; This short zinc binding domain has the pattern of three cysteines and one histidine to coordinate the zinc ion. This domain is found in a wide variety of proteins such as E3 ligases. Pssm-ID: 465626 Cd Length: 22 Bit Score: 38.72 E-value: 1.44e-04
|
||||||||
KREPA2 | cd23959 | Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ... |
217-348 | 1.60e-04 | ||||
Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex. Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 43.70 E-value: 1.60e-04
|
||||||||
PRK13875 | PRK13875 | conjugal transfer protein TrbL; Provisional |
255-350 | 2.86e-03 | ||||
conjugal transfer protein TrbL; Provisional Pssm-ID: 237537 Cd Length: 440 Bit Score: 39.89 E-value: 2.86e-03
|
||||||||
Blast search parameters | ||||
|