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Conserved domains on  [gi|31982373|ref|NP_032017|]
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rRNA 2'-O-methyltransferase fibrillarin isoform 1 [Mus musculus]

Protein Classification

rRNA 2'-O-methyltransferase fibrillarin family protein( domain architecture ID 10015233)

rRNA 2'-O-methyltransferase fibrillarin family protein is a S-adenosyl-L-methionine (SAM)-dependent methyltransferase that has the ability to methylate both RNAs and proteins, and may be involved in pre-rRNA processing by catalyzing the site-specific 2'-hydroxyl methylation of ribose moieties in pre-ribosomal RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00146 PTZ00146
fibrillarin; Provisional
 88-326 1.70e-173

fibrillarin; Provisional


:

Pssm-ID: 240291  Cd Length: 293  Bit Score: 482.70  E-value: 1.70e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373   88 SGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI--SEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKP 165
Cdd:PTZ00146  53 GPGKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVedAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKP 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  166 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ 245
Cdd:PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  246 PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 325
Cdd:PTZ00146 213 PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292


                 .
gi 31982373  326 K 326
Cdd:PTZ00146 293 K 293
 
Name Accession Description Interval E-value
PTZ00146 PTZ00146
fibrillarin; Provisional
 88-326 1.70e-173

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 482.70  E-value: 1.70e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373   88 SGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI--SEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKP 165
Cdd:PTZ00146  53 GPGKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVedAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKP 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  166 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ 245
Cdd:PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  246 PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 325
Cdd:PTZ00146 213 PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292


                 .
gi 31982373  326 K 326
Cdd:PTZ00146 293 K 293
Fibrillarin pfam01269
Fibrillarin;
94-321 5.02e-148

Fibrillarin;


Pssm-ID: 396019  Cd Length: 227  Bit Score: 415.46  E-value: 5.02e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373    94 VEPH-RHEGVFICR-GKEDA-LVTKNLVPGESVYGEKRVSISEGddkiEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 170
Cdd:pfam01269   1 VEPHeRFEGVYIVKlGDGDArLATKNLVPGESVYGEKLIKVEGE----EYRVWNPFRSKLAAAILKGLKEIPIKPGSKVL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373   171 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR 250
Cdd:pfam01269  77 YLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNIVPILEDARHPQKYRMLVEMVDVIFADVAQPDQAR 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31982373   251 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP 321
Cdd:pfam01269 157 ILALNARYFLKEGGYFMISIKARSIDVTKEPEEVFKREVRKLKEEGFKPIEQVHLEPYEKDHAMVVGKYKR 227
NOP1 COG1889
Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];
95-320 6.53e-105

Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441493  Cd Length: 222  Bit Score: 305.97  E-value: 6.53e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  95 EPHRHEGVFICR-GKEDALVTKNLVPGESVYGEKRVSIsegdDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLG 173
Cdd:COG1889   1 MEELFEGVYRVEfDGEKRLATKNLVPGKRVYGERLIKI----EGVEYREWDPRRSKLAAAILKGLKELPIKEGSKVLYLG 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373 174 AASGTTVSHVSDIVgPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVA 253
Cdd:COG1889  77 AASGTTVSHVSDIV-PEGPVYAVEFAPRVMRDLLEVAESRPNIIPILADARKPEEYAHVVEKVDVIYQDVAQPNQAEIAI 155

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31982373 254 LNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 320
Cdd:COG1889 156 KNADFFLKKGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEERGFEILEIIDLEPYHKDHLMVVARKK 222
 
Name Accession Description Interval E-value
PTZ00146 PTZ00146
fibrillarin; Provisional
 88-326 1.70e-173

fibrillarin; Provisional


Pssm-ID: 240291  Cd Length: 293  Bit Score: 482.70  E-value: 1.70e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373   88 SGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI--SEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKP 165
Cdd:PTZ00146  53 GPGKVIVVPHRFPGVFIAKGKSDALVTKNMVPGESVYGEKRISVedAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKP 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  166 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQ 245
Cdd:PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ 212

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  246 PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 325
Cdd:PTZ00146 213 PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRPVKKK 292


                 .
gi 31982373  326 K 326
Cdd:PTZ00146 293 K 293
Fibrillarin pfam01269
Fibrillarin;
94-321 5.02e-148

Fibrillarin;


Pssm-ID: 396019  Cd Length: 227  Bit Score: 415.46  E-value: 5.02e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373    94 VEPH-RHEGVFICR-GKEDA-LVTKNLVPGESVYGEKRVSISEGddkiEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 170
Cdd:pfam01269   1 VEPHeRFEGVYIVKlGDGDArLATKNLVPGESVYGEKLIKVEGE----EYRVWNPFRSKLAAAILKGLKEIPIKPGSKVL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373   171 YLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR 250
Cdd:pfam01269  77 YLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKRPNIVPILEDARHPQKYRMLVEMVDVIFADVAQPDQAR 156

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 31982373   251 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRP 321
Cdd:pfam01269 157 ILALNARYFLKEGGYFMISIKARSIDVTKEPEEVFKREVRKLKEEGFKPIEQVHLEPYEKDHAMVVGKYKR 227
NOP1 COG1889
Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];
95-320 6.53e-105

Fibrillarin-like rRNA 2'-O-methylase NOP1 [Translation, ribosomal structure and biogenesis];


Pssm-ID: 441493  Cd Length: 222  Bit Score: 305.97  E-value: 6.53e-105
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  95 EPHRHEGVFICR-GKEDALVTKNLVPGESVYGEKRVSIsegdDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLG 173
Cdd:COG1889   1 MEELFEGVYRVEfDGEKRLATKNLVPGKRVYGERLIKI----EGVEYREWDPRRSKLAAAILKGLKELPIKEGSKVLYLG 76

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373 174 AASGTTVSHVSDIVgPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVA 253
Cdd:COG1889  77 AASGTTVSHVSDIV-PEGPVYAVEFAPRVMRDLLEVAESRPNIIPILADARKPEEYAHVVEKVDVIYQDVAQPNQAEIAI 155

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31982373 254 LNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 320
Cdd:COG1889 156 KNADFFLKKGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEERGFEILEIIDLEPYHKDHLMVVARKK 222
PRK04266 PRK04266
fibrillarin-like rRNA/tRNA 2'-O-methyltransferase;
93-320 6.48e-103

fibrillarin-like rRNA/tRNA 2'-O-methyltransferase;


Pssm-ID: 235267  Cd Length: 226  Bit Score: 301.03  E-value: 6.48e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373   93 MVEPHRHEGVFICR--GKEDALVTKNLVPGESVYGEKRVSIsegdDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVL 170
Cdd:PRK04266   2 VKKKEIFEGVYEVEfeDGSKRLATKNLVPGKRVYGERLIKW----EGVEYREWNPRRSKLAAAILKGLKNFPIKKGSKVL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  171 YLGAASGTTVSHVSDIVGpDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR 250
Cdd:PRK04266  78 YLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAE 156

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  251 IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYR 320
Cdd:PRK04266 157 IAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVARKK 226
Gcd14 COG2519
tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 ...
 151-268 1.87e-06

tRNA A58 N-methylase Trm61 [Translation, ribosomal structure and biogenesis]; tRNA A58 N-methylase Trm61 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 442009 [Multi-domain]  Cd Length: 249  Bit Score: 48.23  E-value: 1.87e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373 151 AAAILGGVDqihIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFShrsgRDLINLAKKrtNiipvIEDARHPHKYR 230
Cdd:COG2519  80 AGYIIARLD---IFPGARVLEAGTGSGALTLALARAVGPEGKVYSYERR----EDFAEIARK--N----LERFGLPDNVE 146

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 31982373 231 MLIA---------MVDVIFADVAQPdqtrIVAL-NAHTFLRNGGHFVI 268
Cdd:COG2519 147 LKLGdiregidegDVDAVFLDMPDP----WEALeAVAKALKPGGVLVA 190
RlmE COG0293
23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and ...
 163-268 3.99e-05

23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ [Translation, ribosomal structure and biogenesis]; 23S rRNA U2552 (ribose-2'-O)-methylase RlmE/FtsJ is part of the Pathway/BioSystem: 23S rRNA modification


Pssm-ID: 440062 [Multi-domain]  Cd Length: 208  Bit Score: 43.91  E-value: 3.99e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373 163 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVefshrsgrDLINLAKkrtniIPVIE----DARHPHKYRMLIAM--- 235
Cdd:COG0293  48 IKPGMRVVDLGAAPGGWSQVAAKRVGGKGRVIAL--------DLLPMEP-----IPGVEfiqgDFREDEVLDQLLEAlgg 114

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 31982373 236 --VDVIFADVA-------QPDQTRIVALN------AHTFLRNGGHFVI 268
Cdd:COG0293 115 rkVDLVLSDMApntsghkSVDHARSMYLVelaldfARKVLKPGGAFVV 162
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
136-272 5.40e-04

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 40.37  E-value: 5.40e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373 136 DKIEYRAWnpfrSKLAAAILggvDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPdglVYAVEFShrsgRDLINLAKKRTN 215
Cdd:COG4976  24 EDLGYEAP----ALLAEELL---ARLPPGPFGRVLDLGCGTGLLGEALRPRGYR---LTGVDLS----EEMLAKAREKGV 89

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 31982373 216 IIPVIED-----ARHPHKYRmLIAMVDVIfadVAQPDQTRIVAlNAHTFLRNGGHFVISIKA 272
Cdd:COG4976  90 YDRLLVAdladlAEPDGRFD-LIVAADVL---TYLGDLAAVFA-GVARALKPGGLFIFSVED 146
PRK13942 PRK13942
protein-L-isoaspartate O-methyltransferase; Provisional
 159-197 2.73e-03

protein-L-isoaspartate O-methyltransferase; Provisional


Pssm-ID: 184409  Cd Length: 212  Bit Score: 38.46  E-value: 2.73e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 31982373  159 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVE 197
Cdd:PRK13942  70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIE 108
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 158-269 3.92e-03

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 37.28  E-value: 3.92e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373 158 VDQIHIKPGAKVLYLGAASGTTVSHVSDIvgpDGLVYAVEFShrsgRDLINLAKKR-----TNIIPVIEDARH---PHKY 229
Cdd:COG2226  15 LAALGLRPGARVLDLGCGTGRLALALAER---GARVTGVDIS----PEMLELARERaaeagLNVEFVVGDAEDlpfPDGS 87

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 31982373 230 rmliamVDVIFA-DVAQ--PDQTRIVAlNAHTFLRNGGHFVIS 269
Cdd:COG2226  88 ------FDLVISsFVLHhlPDPERALA-EIARVLKPGGRLVVV 123
PRK13943 PRK13943
protein-L-isoaspartate O-methyltransferase; Provisional
 161-277 6.72e-03

protein-L-isoaspartate O-methyltransferase; Provisional


Pssm-ID: 237568 [Multi-domain]  Cd Length: 322  Bit Score: 37.90  E-value: 6.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373  161 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFShrsgRDLINLAKKRT------NIIPVIEDARHP-HKYrmli 233
Cdd:PRK13943  76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS----RKICEIAKRNVrrlgieNVIFVCGDGYYGvPEF---- 147

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 31982373  234 AMVDVIFADVAQPDqtriVALNAHTFLRNGGHFVISIKANCIDS 277
Cdd:PRK13943 148 APYDVIFVTVGVDE----VPETWFTQLKEGGRVIVPINLKLSRR 187
PCMT pfam01135
Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT);
163-273 8.44e-03

Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT);


Pssm-ID: 395902 [Multi-domain]  Cd Length: 205  Bit Score: 36.96  E-value: 8.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31982373   163 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFShrsgRDLINLAKKR------TNIIPVIEDARHPHKYRmliAMV 236
Cdd:pfam01135  71 LKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHI----PELVEIARRNleklglENVIVVVGDGRQGWPEF---APY 143

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 31982373   237 DVIFADVAQPD--QTRIvalnahTFLRNGGHFVISIKAN 273
Cdd:pfam01135 144 DAIHVGAAAPEipEALI------DQLKEGGRLVIPVGPN 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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