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Conserved domains on  [gi|224809371|ref|NP_032468|]
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kinesin-like protein KIF2A isoform 1 [Mus musculus]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
195-523 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 597.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 195 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 274
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 354
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 355 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 432
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 433 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 512
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 224809371 513 LNTLRYANRVK 523
Cdd:cd01367  318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
195-523 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 597.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 195 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 274
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 354
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 355 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 432
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 433 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 512
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 224809371 513 LNTLRYANRVK 523
Cdd:cd01367  318 LNTLRYADRVK 328
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
195-531 7.12e-133

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 395.40  E-value: 7.12e-133
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   195 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 271
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   272 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 351
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   352 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 423
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   424 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 501
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340       350
                   ....*....|....*....|....*....|
gi 224809371   502 ISPGMASCENTLNTLRYANRVKEFGISPSD 531
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPIV 334
Kinesin pfam00225
Kinesin motor domain;
201-524 2.74e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 391.17  E-value: 2.74e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  201 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 280
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  281 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 356
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  357 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 428
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  429 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 507
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 224809371  508 SCENTLNTLRYANRVKE 524
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
198-524 2.97e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 218.07  E-value: 2.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 198 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 274
Cdd:COG5059    9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 353
Cdd:COG5059   87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 354 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 428
Cdd:COG5059  160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 429 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 505
Cdd:COG5059  240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                        330
                 ....*....|....*....
gi 224809371 506 MASCENTLNTLRYANRVKE 524
Cdd:COG5059  317 SNSFEETINTLKFASRAKS 335
PLN03188 PLN03188
kinesin-12 family protein; Provisional
198-523 4.32e-38

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 152.78  E-value: 4.32e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  198 VCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 277
Cdd:PLN03188  102 VIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  278 MATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML--------KKPNYKKLELQVYATFFEIYSGKVFD 348
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarineeqIKHADRQLKYQCRCSFLEIYNEQITD 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  349 LLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL--RRKGKLHG-- 423
Cdd:PLN03188  245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGls 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  424 -----KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR----NKP-HTPFRASKLTQVLRDSfIGEN 493
Cdd:PLN03188  325 sfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtGKQrHIPYRDSRLTFLLQES-LGGN 402
                         330       340       350
                  ....*....|....*....|....*....|
gi 224809371  494 SRTCMIATISPGMASCENTLNTLRYANRVK 523
Cdd:PLN03188  403 AKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
195-523 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 597.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 195 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 274
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGDFSGknQDCSKGIYALAARDVFLMLKKPNYKkLELQVYATFFEIYSGKVFDLLNRKT 354
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 355 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG--KLHGKFSLIDLAG 432
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRDRGtnKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 433 NERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENT 512
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 224809371 513 LNTLRYANRVK 523
Cdd:cd01367  318 LNTLRYADRVK 328
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
195-523 1.22e-137

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 407.41  E-value: 1.22e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 195 RICVCVRKRPLNKKEtQMKDLDVITIPSKDVVMVHEPKQkvdltRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 274
Cdd:cd00106    1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKN-----RVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGDFsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN--R 352
Cdd:cd00106   75 EGYNGTIFAYGQTGSGKTYTMLGPD-----PEQRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 353 KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL-------HGKF 425
Cdd:cd00106  150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 426 SLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISP 504
Cdd:cd00106  230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQnKHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                        330
                 ....*....|....*....
gi 224809371 505 GMASCENTLNTLRYANRVK 523
Cdd:cd00106  308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
195-531 7.12e-133

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 395.40  E-value: 7.12e-133
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   195 RICVCVRKRPLNKKETQMKDLDVITIP---SKDVVMVHEPKQKVDltrylenQTFRFDYAFDDSAPNEMVYRFTARPLVE 271
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPdkvGKTLTVRSPKNRQGE-------KKFTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   272 TIFERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLLN 351
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGTPD------SPGIIPRALKDLFEKIDKREEGW-QFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   352 -RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK-------LHG 423
Cdd:smart00129 147 pSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371   424 KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALG--RNKPHTPFRASKLTQVLRDSFiGENSRTCMIAT 501
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAqhSKSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340       350
                   ....*....|....*....|....*....|
gi 224809371   502 ISPGMASCENTLNTLRYANRVKEFGISPSD 531
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEIKNKPIV 334
Kinesin pfam00225
Kinesin motor domain;
201-524 2.74e-131

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 391.17  E-value: 2.74e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  201 RKRPLNKKETQMKDLDVITIPSKDvvmvHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 280
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVD----SETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  281 CFAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLL----NRKTKL 356
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQK-TKERSEFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  357 RVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK--------LHGKFSLI 428
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  429 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSFIGeNSRTCMIATISPGMA 507
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKsKHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 224809371  508 SCENTLNTLRYANRVKE 524
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
195-524 3.19e-89

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 283.08  E-value: 3.19e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 195 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVmVHEPKQKVDLTRYLEN------------QTFRFDYAFDDSAPNEMVY 262
Cdd:cd01370    1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHML-VFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 263 RFTARPLVETIFERGMATCFAYGQTGSGKTHTMggdfSGKNQDcsKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIY 342
Cdd:cd01370   80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTM----LGTPQE--PGLMVLTMKELFKRIESLKDEK-EFEVSMSYLEIY 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 343 SGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL 421
Cdd:cd01370  153 NETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQQDKT 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 422 H--------GKFSLIDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRAL---GRNKPHTPFRASKLTQVLRDSf 489
Cdd:cd01370  233 AsinqqvrqGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALadpGKKNKHIPYRDSKLTRLLKDS- 309
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 224809371 490 IGENSRTCMIATISPGMASCENTLNTLRYANRVKE 524
Cdd:cd01370  310 LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKN 344
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
198-521 4.77e-82

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 264.19  E-value: 4.77e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 198 VCVRKRPLNKKEtqmkdldvITIPSKDVVMVHEPKQKVDLTRyleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 277
Cdd:cd01372    5 VAVRVRPLLPKE--------IIEGCRICVSFVPGEPQVTVGT---DKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 278 MATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVF-LMLKKPNYKKLELQVYatFFEIYSGKVFDLLNRKTK- 355
Cdd:cd01372   74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFkKIEKKKDTFEFQLKVS--FLEIYNEEIRDLLDPETDk 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 356 ---LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------------ 420
Cdd:cd01372  152 kptISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsaddk 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 421 ---LHGKFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALG---RNKPHTPFRASKLTQVLRDSfIGENS 494
Cdd:cd01372  232 nstFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LGGNS 309
                        330       340
                 ....*....|....*....|....*..
gi 224809371 495 RTCMIATISPGMASCENTLNTLRYANR 521
Cdd:cd01372  310 HTLMIACVSPADSNFEETLNTLKYANR 336
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
196-524 8.88e-80

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 257.26  E-value: 8.88e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 196 ICVCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKqkvdltryleNQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 275
Cdd:cd01374    2 ITVTVRVRPLNSREIGINE-QVAWEIDNDTIYLVEPP----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 276 RGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLN-RKT 354
Cdd:cd01374   71 GYNGTIFAYGQTSSGKTFTMSGDED------EPGIIPLAIRDIFSKIQDTPDREFLLRV--SYLEIYNEKINDLLSpTSQ 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 355 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLH--------GKFS 426
Cdd:cd01374  143 NLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEleegtvrvSTLN 222
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 427 LIDLAGNERGADT-SSADRqtRLEGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSFIGeNSRTCMIATIS 503
Cdd:cd01374  223 LIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLSEGKVggHIPYRDSKLTRILQPSLGG-NSRTAIICTIT 299
                        330       340
                 ....*....|....*....|.
gi 224809371 504 PGMASCENTLNTLRYANRVKE 524
Cdd:cd01374  300 PAESHVEETLNTLKFASRAKK 320
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
195-523 7.90e-77

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 251.12  E-value: 7.90e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 195 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQ-KVDLTRYLENQTFRFDYAFD--DS-----APNEMVYRFTA 266
Cdd:cd01365    2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYWshDSedpnyASQEQVYEDLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 267 RPLVETIFErGMATC-FAYGQTGSGKTHTMGGDfsgknqDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGK 345
Cdd:cd01365   82 EELLQHAFE-GYNVClFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEK 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 346 VFDLLNRKTK-----LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRK-- 418
Cdd:cd01365  155 VRDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKrh 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 419 -------GKLHGKFSLIDLAGNERgADTSSADrQTRL-EGAEINKSLLALKECIRAL--------GRNKPHTPFRASKLT 482
Cdd:cd01365  235 daetnltTEKVSKISLVDLAGSER-ASSTGAT-GDRLkEGANINKSLTTLGKVISALadmssgksKKKSSFIPYRDSVLT 312
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 224809371 483 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 523
Cdd:cd01365  313 WLLKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
196-523 2.11e-73

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 240.69  E-value: 2.11e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 196 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFE 275
Cdd:cd01369    4 IKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIATSE---------TGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 276 RGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKpNYKKLELQVYATFFEIYSGKVFDLLN-RKT 354
Cdd:cd01369   75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIFETIYS-MDENLEFHVKVSYFEIYMEKIRDLLDvSKT 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 355 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG-----KLHGKFSLID 429
Cdd:cd01369  151 NLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENvetekKKSGKLYLVD 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 430 LAGNERgADTSSADRQTRLEGAEINKSLLALKECIRALG-RNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGMAS 508
Cdd:cd01369  231 LAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTdGKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSSYN 308
                        330
                 ....*....|....*
gi 224809371 509 CENTLNTLRYANRVK 523
Cdd:cd01369  309 ESETLSTLRFGQRAK 323
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
198-523 1.23e-72

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 238.90  E-value: 1.23e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 198 VCVRKRPLNKKETQMKDLDVITI-PSKDVVMVHEPKQkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFER 276
Cdd:cd01371    5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKA----TANEPPKTFTFDAVFDPNSKQLDVYDETARPLVDSVLEG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 277 GMATCFAYGQTGSGKTHTMGGDfsgKNQDCSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL--NRKT 354
Cdd:cd01371   81 YNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFGHIARSQNNQ-QFLVRVSYLEIYNEEIRDLLgkDQTK 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 355 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR-----KGKLH---GKFS 426
Cdd:cd01371  157 RLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECsekgeDGENHirvGKLN 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 427 LIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRALGRNK-PHTPFRASKLTQVLRDSfIGENSRTCMIATISPG 505
Cdd:cd01371  237 LVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKsTHIPYRDSKLTRLLQDS-LGGNSKTVMCANIGPA 314
                        330
                 ....*....|....*...
gi 224809371 506 MASCENTLNTLRYANRVK 523
Cdd:cd01371  315 DYNYDETLSTLRYANRAK 332
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
196-523 1.36e-69

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 230.56  E-value: 1.36e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 196 ICVCVRKRPLNKKEtQMKDLDVITIPSkdvvmvhEPKQKVDLTR-YLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIF 274
Cdd:cd01366    4 IRVFCRVRPLLPSE-ENEDTSHITFPD-------EDGQTIELTSiGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ErGMATC-FAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN-- 351
Cdd:cd01366   75 D-GYNVCiFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLApg 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 352 --RKTKLRVLEDG-KQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR-----RKGKLHG 423
Cdd:cd01366  148 naPQKKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISgrnlqTGEISVG 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 424 KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGeNSRTCMIATIS 503
Cdd:cd01366  228 KLNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNIS 305
                        330       340
                 ....*....|....*....|
gi 224809371 504 PGMASCENTLNTLRYANRVK 523
Cdd:cd01366  306 PAESNLNETLNSLRFASKVN 325
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
193-523 2.89e-68

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 227.98  E-value: 2.89e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 193 EHRICVCVRKRPLNKKETQMKDLDVITI--PSKDVVMVHEPKQKVDLTRylenqTFRFDYAFDDSAPNEMVYRFTARPLV 270
Cdd:cd01364    1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 271 ETIFERGMATCFAYGQTGSGKTHTMGGDFSGKN-----QDCSKGIYALAARDVFlmlkkpnyKKLELQ-----VYATFFE 340
Cdd:cd01364   76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSPNEeytweLDPLAGIIPRTLHQLF--------EKLEDNgteysVKVSYLE 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 341 IYSGKVFDLL----NRKTKLRVLED--GKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQII 414
Cdd:cd01364  148 IYNEELFDLLspssDVSERLRMFDDprNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSIT 227
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 415 LRRK------------GKLHgkfsLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRNKPHTPFRASKLT 482
Cdd:cd01364  228 IHIKettidgeelvkiGKLN----LVDLAGSENIGRSGAVDKRAR-EAGNINQSLLTLGRVITALVERAPHVPYRESKLT 302
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 224809371 483 QVLRDSfIGENSRTCMIATISPGMASCENTLNTLRYANRVK 523
Cdd:cd01364  303 RLLQDS-LGGRTKTSIIATISPASVNLEETLSTLEYAHRAK 342
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
198-524 2.97e-62

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 218.07  E-value: 2.97e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 198 VCVRKRPLNKKETQMKDlDVITIPSKDVVMVHEPKQK---VDLTRYLENqTFRFDYAFDDSAPNEMVYRFTARPLVETIF 274
Cdd:COG5059    9 LKSRLSSRNEKSVSDIK-STIRIIPGELGERLINTSKkshVSLEKSKEG-TYAFDKVFGPSATQEDVYEETIKPLIDSLL 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKKlELQVYATFFEIYSGKVFDLL-NRK 353
Cdd:COG5059   87 LGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLSLKELFSKLEDLSMTK-DFAVSISYLEIYNEKIYDLLsPNE 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 354 TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-----KFSLI 428
Cdd:COG5059  160 ESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLV 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 429 DLAGNERGADTssADRQTRL-EGAEINKSLLALKECIRALGRNKP--HTPFRASKLTQVLRDSfIGENSRTCMIATISPG 505
Cdd:COG5059  240 DLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINALGDKKKsgHIPYRESKLTRLLQDS-LGGNCNTRVICTISPS 316
                        330
                 ....*....|....*....
gi 224809371 506 MASCENTLNTLRYANRVKE 524
Cdd:COG5059  317 SNSFEETINTLKFASRAKS 335
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
200-523 1.01e-55

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 193.57  E-value: 1.01e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 200 VRKRPLNKKETQMKDLDvitiPSKDVVMVHEPKqkvDLTR-YLENQ----TFRFDYAFDDsAPNEMVYRFTARPLVETIF 274
Cdd:cd01375    6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQqedwSFKFDGVLHN-ASQELVYETVAKDVVSSAL 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGdfsGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVyaTFFEIYSGKVFDLLNRK- 353
Cdd:cd01375   78 AGYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFRMIEERPTKAYTVHV--SYLEIYNEQLYDLLSTLp 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 354 ------TKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK------- 420
Cdd:cd01375  153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 421 LHGKFSLIDLAGNERGADTSSADrQTRLEGAEINKSLLALKECIRALGR-NKPHTPFRASKLTQVLRDSfIGENSRTCMI 499
Cdd:cd01375  233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSDkDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                        330       340
                 ....*....|....*....|....
gi 224809371 500 ATISPGMASCENTLNTLRYANRVK 523
Cdd:cd01375  311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
194-523 4.45e-53

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 186.95  E-value: 4.45e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 194 HRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKvdltrylenqTFRFDYAFDDSAPNEMVYRFTARPLVETI 273
Cdd:cd01373    1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPK----------TFTFDHVADSNTNQESVFQSVGKPIVESC 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 274 FERGMATCFAYGQTGSGKTHTMGGDfSGKNQDCSKGIYALAARdVFLML-------KKPNYKKLELQVYATFFEIYSGKV 346
Cdd:cd01373   71 LSGYNGTIFAYGQTGSGKTYTMWGP-SESDNESPHGLRGVIPR-IFEYLfsliqreKEKAGEGKSFLCKCSFLEIYNEQI 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 347 FDLLNR-KTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHG-- 423
Cdd:cd01373  149 YDLLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfv 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 424 -----KFSLIDLAGNERGADTsSADRQTRLEGAEINKSLLALKECIRAL-----GRNKpHTPFRASKLTQVLRDSfIGEN 493
Cdd:cd01373  229 nirtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALvdvahGKQR-HVCYRDSKLTFLLRDS-LGGN 305
                        330       340       350
                 ....*....|....*....|....*....|
gi 224809371 494 SRTCMIATISPGMASCENTLNTLRYANRVK 523
Cdd:cd01373  306 AKTAIIANVHPSSKCFGETLSTLRFAQRAK 335
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
198-519 7.92e-52

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 183.36  E-value: 7.92e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 198 VCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTR-----YLENQtFRFDYAFDDSAPNEMVYRFTARPLVET 272
Cdd:cd01368    5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKGSAANKSernggQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 273 IFERGMATCFAYGQTGSGKTHTMGGdfsgknqdcSKGIYALAARDVFLMLKK-PNYkklelQVYATFFEIYSGKVFDLLN 351
Cdd:cd01368   84 LLHGKNGLLFTYGVTNSGKTYTMQG---------SPGDGGILPRSLDVIFNSiGGY-----SVFVSYIEIYNEYIYDLLE 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 352 --------RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQI-ILRRKGKLH 422
Cdd:cd01368  150 pspssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQAPGDSD 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 423 G------------KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGRN-----KPHTPFRASKLTQVL 485
Cdd:cd01368  230 GdvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSKLTHLF 308
                        330       340       350
                 ....*....|....*....|....*....|....
gi 224809371 486 RDSFIGEnSRTCMIATISPGMASCENTLNTLRYA 519
Cdd:cd01368  309 QNYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
195-523 1.46e-50

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 179.24  E-value: 1.46e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 195 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPkqkvdlTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIF 274
Cdd:cd01376    1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 275 ERGMATCFAYGQTGSGKTHTMGGDFSgknqdcSKGIYALAARDVFLMLKKPNYKkleLQVYATFFEIYSGKVFDLLNRKT 354
Cdd:cd01376   75 EGQNATVFAYGSTGAGKTFTMLGSPE------QPGLMPLTVMDLLQMTRKEAWA---LSFTMSYLEIYQEKILDLLEPAS 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 355 K-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL------HGKFSL 427
Cdd:cd01376  146 KeLVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 428 IDLAGNERGADTSsaDRQTRL-EGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSfIGENSRTCMIATISPGM 506
Cdd:cd01376  226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                        330
                 ....*....|....*..
gi 224809371 507 ASCENTLNTLRYANRVK 523
Cdd:cd01376  303 TFYQDTLSTLNFAARSR 319
PLN03188 PLN03188
kinesin-12 family protein; Provisional
198-523 4.32e-38

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 152.78  E-value: 4.32e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  198 VCVRKRPLNKKETQMkdldvitipskdvvMVHEPKQKVDLTryLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERG 277
Cdd:PLN03188  102 VIVRMKPLNKGEEGE--------------MIVQKMSNDSLT--INGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  278 MATCFAYGQTGSGKTHTMGGDFSG-KNQDCSKGIYALAARdVFLML--------KKPNYKKLELQVYATFFEIYSGKVFD 348
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGlLEEHLSGDQQGLTPR-VFERLfarineeqIKHADRQLKYQCRCSFLEIYNEQITD 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  349 LLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIIL--RRKGKLHG-- 423
Cdd:PLN03188  245 LLDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGls 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  424 -----KFSLIDLAGNERGADTSSADRQTRlEGAEINKSLLALKECIRALGR----NKP-HTPFRASKLTQVLRDSfIGEN 493
Cdd:PLN03188  325 sfktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtGKQrHIPYRDSRLTFLLQES-LGGN 402
                         330       340       350
                  ....*....|....*....|....*....|
gi 224809371  494 SRTCMIATISPGMASCENTLNTLRYANRVK 523
Cdd:PLN03188  403 AKLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
236-504 1.54e-12

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 66.21  E-value: 1.54e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 236 DLTRYLENQTFRFDYAFDDSAPNEMVYRfTARPLVETIFE-RGMATCFAYGQTGSGKTHTMggdfsgknqdcsKGIYALA 314
Cdd:cd01363   10 ELPIYRDSKIIVFYRGFRRSESQPHVFA-IADPAYQSMLDgYNNQSIFAYGESGAGKTETM------------KGVIPYL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 315 ARDVFlmlkkpnykklelqvyatffeiysgkvfdllNRKTKLRVLEDgkqqvqvVGLQEREVKCVEDVLKLIDIGNSCRT 394
Cdd:cd01363   77 ASVAF-------------------------------NGINKGETEGW-------VYLTEITVTLEDQILQANPILEAFGN 118
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371 395 SgQTSANAHSSRSHAVFQIILrrkgklhgkfsliDLAGNERgadtssadrqtrlegaeINKSLLALKECIRAlgrnkpht 474
Cdd:cd01363  119 A-KTTRNENSSRFGKFIEILL-------------DIAGFEI-----------------INESLNTLMNVLRA-------- 159
                        250       260       270
                 ....*....|....*....|....*....|
gi 224809371 475 pfraskltqvlrdsfigenSRTCMIATISP 504
Cdd:cd01363  160 -------------------TRPHFVRCISP 170
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
191-350 1.53e-04

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 42.59  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  191 IDEHR--ICVCVRKRPLNKKETQmkdldvITIPSKDVVMVHEPKqkvdltrylENQTFRFDYAFDDSAPNEMVYRFTaRP 268
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 224809371  269 LVETIFeRGMATC-FAYGQTGSGKThtmggdfSGKNQDCSKGIYALAardvflmlkKPNYKKLELQVYATFFEIYSGKVF 347
Cdd:pfam16796  79 LVQSCL-DGYNVCiFAYGQTGSGSN-------DGMIPRAREQIFRFI---------SSLKKGWKYTIELQFVEIYNESSQ 141

                  ...
gi 224809371  348 DLL 350
Cdd:pfam16796 142 DLL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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