|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
903-1638 |
1.37e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.83 E-value: 1.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 903 RRQQLENEVKSAQEEIQTLKDqgpqeslVRKEVLKKVPDpaleesfQQLQQTLAEEQHKnqlLQEELGALQLRLQALEQE 982
Cdd:TIGR02168 173 RRKETERKLERTRENLDRLED-------ILNELERQLKS-------LERQAEKAERYKE---LKAELRELELALLVLRLE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 983 TRDGGQEYVVKEVLRIEPDRAQEDEVLQLREE-LEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVtEREVVKLQNd 1061
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEkLEELRLEVSELEEEIEELQKELYALANEISRLEQQK-QILRERLAN- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1062 pqLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEVLKVEKDAAVE----------REVNDL 1131
Cdd:TIGR02168 314 --LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEeleeqletlrSKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1132 TRQYEDEAAKARSGQREKTELLRKIWALEEE----------NAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKFR 1201
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLEDRRERLQQEieellkkleeAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1202 GAEEQLKSYQSELEALRNR------------GPQVEVKEVTKEVIK-----------YTTDPETEQELQRLREEIMDK-- 1256
Cdd:TIGR02168 472 EAEQALDAAERELAQLQARldslerlqenleGFSEGVKALLKNQSGlsgilgvlselISVDEGYEAAIEAALGGRLQAvv 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1257 TRLIERCDLEIYQLKQ---------EIQALKDTKPQVQTREVVQEILQF--------QEDPQTKKEVESL--------RI 1311
Cdd:TIGR02168 552 VENLNAAKKAIAFLKQnelgrvtflPLDSIKGTEIQGNDREILKNIEGFlgvakdlvKFDPKLRKALSYLlggvlvvdDL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1312 QLSEEQKKQ-------VDLEGERASQE-----EKIKRKEEELAQGKE-RVVRQEV-VQYEDEPDLRAEVTAF---TNSID 1374
Cdd:TIGR02168 632 DNALELAKKlrpgyriVTLDGDLVRPGgvitgGSAKTNSSILERRREiEELEEKIeELEEKIAELEKALAELrkeLEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1375 AELRQIDKLHVELRRLQHRRAELERQLEELERERQARRA-AELEVQRLQQRLAALEQEEAK-TGEKVTHTQKVVLQQDP- 1451
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAqLSKELTELEAEIEELEERLEEaEEELAEAEAEIEELEAQi 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1452 -QQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEIKEKVVFSESVQvEKGDTEQEIQRLKKSLEEESQSKRE 1530
Cdd:TIGR02168 792 eQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE-QIEELSEDIESLAAEIEELEELIEE 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1531 LDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNitTIDsgtHLNSRL 1610
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV--RID---NLQERL 945
|
810 820
....*....|....*....|....*....
gi 112421039 1611 WSLEK-ELDDLKKMSKDKDLEIDELQRRL 1638
Cdd:TIGR02168 946 SEEYSlTLEEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
943-1574 |
5.45e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.77 E-value: 5.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 943 ALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQETRDGGQEY--VVKEVLRIEPDRA-QEDEVLQLREELEALR 1019
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEyeLLAELARLEQDIArLEERRRELEERLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1020 RQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREvvklqndpqlEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRL 1099
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAE----------AELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1100 EKERAMAEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKVVVQEKVREIVRPD 1179
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1180 PKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVKEVTKEVIKYTTDPETEQELQRLREEImdktRL 1259
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA----AL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1260 IERCDLEIYQLKQEIQALKDTKPQVQTRevvqeilqfqedpqtkkeveslriqlseeqkkqvdLEGERASQEEKIKRKEE 1339
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATF-----------------------------------LPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1340 ELAQGKERVVRQEVVQYEDEPDLRAEVT-AFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEV 1418
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLGDTlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1419 QRLQQRLAALEQEEAKtgekvthtqkvvlqqdpQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEIKEKVV 1498
Cdd:COG1196 674 LLEAEAELEELAERLA-----------------EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1499 FSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDsevtRLEAKLSELEFYNSKS-------SKELDFLREENHKLQLERQ 1571
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELE----RLEREIEALGPVNLLAieeyeelEERYDFLSEQREDLEEARE 812
|
...
gi 112421039 1572 NLQ 1574
Cdd:COG1196 813 TLE 815
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1005-1647 |
5.64e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.77 E-value: 5.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1005 EDEVLQLREELEALRRQkgAREAEvlllqqRVAALAAEksrvqEKVTEREVVKLQNDpQLEAEYRRLQEEHQREGTLREK 1084
Cdd:COG1196 192 EDILGELERQLEPLERQ--AEKAE------RYRELKEE-----LKELEAELLLLKLR-ELEAELEELEAELEELEAELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1085 QEEELSFLQAKLRRLEKERAMAEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENA 1164
Cdd:COG1196 258 LEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1165 KVVVQEKVREivrpdpKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNrgpqvEVKEVTKEVIkyttdpETEQ 1244
Cdd:COG1196 338 ELEELEEELE------EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE-----ELLEALRAAA------ELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1245 ELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKdtkpqvqtREVVQEILQFQEDPQTKKEVESLRIQLSEEQKKQVDLE 1324
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELE--------EEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1325 GERASQEEKIKRKEEELAQgKERVVRQEVVQYEDEPD--LRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLE 1402
Cdd:COG1196 473 ALLEAALAELLEELAEAAA-RLLLLLEAEADYEGFLEgvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1403 ELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPLR 1482
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1483 RKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEfynskssKELDFLREE 1562
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL-------EEALLAEEE 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1563 NHKLQLERQNLQLETRRLQSEIEMAATETRDlknittidsgtHLNSRLWSLEKELDDLKKMSKDKDLEIDELQRRLGSVA 1642
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAERE-----------ELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*
gi 112421039 1643 VKREQ 1647
Cdd:COG1196 774 REIEA 778
|
|
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
388-451 |
4.80e-17 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 76.92 E-value: 4.80e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112421039 388 PLKYRRETPLKPIPVEALCDFESDQGLISRGYSYTLQKNNG-ESWELTDSTGKKLAAPAVCFIIP 451
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDrEKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
903-1523 |
9.61e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 9.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 903 RRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPdpALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQE 982
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEY--ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 983 trdggqeyvvkevlriepdraQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREvvklqndp 1062
Cdd:COG1196 332 ---------------------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE-------- 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1063 QLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEgkitvkevlkvEKDAAVEREVNDLTRQYEDEAAKA 1142
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE-----------EALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1143 RSGQREKTELLRKIWALEEENAkvvvqekvreivrpdpKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGP 1222
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAA----------------LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1223 QVEVKEVTKEVIKYTTDPETEQELQRLREEImdktRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEI--LQFQEDP 1300
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAA----ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIraRAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1301 QTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTAFTNSIDAELRQI 1380
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1381 DKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALL 1460
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112421039 1461 RAQLEEERHRRQLLEGELEPLRRKLAALEK---------AEIKEKVVFSESvqvEKGDTEQEIQRLKKSLEE 1523
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREIEALGPvnllaieeyEELEERYDFLSE---QREDLEEARETLEEAIEE 820
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
694-1253 |
1.47e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 694 DLERQEAEVHKLNQRFNNLSQQVERRAQSLQSARAAYDEYCSGYNRVLQFLAktpsyepQETDSLGQMETKLKNQKNLLD 773
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-------ELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 774 ELASREQEvqkvyADSQQYQQAVKDYELEAEKLRSLLDLENGRNSHVNKRARLQSPAAKVKEEEAALAAKFTEVNAINRQ 853
Cdd:COG1196 313 ELEERLEE-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 854 RLQNLEFALNLLRQQPEAGVTHETLQGgklssgmeetwKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQgpQESLVRK 933
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLE-----------RLERLEEELEELEEALAELEEEEEEEEEALEEA--AEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 934 EVLKKvpdpALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQ-ETRDGGQEYVVKEVLRIEPDRAQEDEVLQLR 1012
Cdd:COG1196 455 EEEEE----ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1013 EELEALRRQKGAREAEVLLLQQRVAALAAE------KSRVQEKVTEREVVKLQNDPQLEAEYRRLQEEHQREGTLREKQE 1086
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAaaieylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1087 EELSF----LQAKLRRLEKERAMAEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEE 1162
Cdd:COG1196 611 ADARYyvlgDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1163 NAKVVVQEKVREIvrpdpKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVKEVTKEVIKYTTDPET 1242
Cdd:COG1196 691 EELELEEALLAEE-----EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|.
gi 112421039 1243 EQELQRLREEI 1253
Cdd:COG1196 766 ERELERLEREI 776
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
937-1596 |
1.02e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.02 E-value: 1.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 937 KKVPDPALEESFQqlqqtLAEEQHKNQLLQEELGALQLRLQALEQETRDGGQEYVVKEVLRIEPDR-AQEDEVLQLREEL 1015
Cdd:PTZ00121 1086 DNRADEATEEAFG-----KAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARkAEDAKRVEIARKA 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1016 EALRRQKGAREAEvlllqqrvAALAAEKSRVQEKVTEREVVKLQNDPQLEAEYRRLQEEHQREGTLREKQE--------- 1086
Cdd:PTZ00121 1161 EDARKAEEARKAE--------DAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAkkaeavkka 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1087 EELSFLQAKLRRLEKERAM----------------------AEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARS 1144
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNeeirkfeearmahfarrqaaikAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1145 GQREKTELLRKiwALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQV 1224
Cdd:PTZ00121 1313 EAKKADEAKKK--AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1225 ----EVKEVTKEVIKYTTDPETEQELQRLREEIMDKTRLIERCDlEIYQLKQEIQALKDTKPQVQTREVVQEILQFQED- 1299
Cdd:PTZ00121 1391 kkadEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD-EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEa 1469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1300 ---------PQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTAFT 1370
Cdd:PTZ00121 1470 kkadeakkkAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1371 NSIDAElrqidklhvELRRLQHRRAELERQLEELERERQARRAAEL---------EVQRLQQRLAALEQEEAKTGEKVTH 1441
Cdd:PTZ00121 1550 ELKKAE---------ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAkkaeearieEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1442 TQKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPL-------------RRKLAALEKAEIKEKVvfSESVQVEKG 1508
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaaeeakkaeedKKKAEEAKKAEEDEKK--AAEALKKEA 1698
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1509 DTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSEL---EFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIE 1585
Cdd:PTZ00121 1699 EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAkkeAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
730
....*....|.
gi 112421039 1586 MAATETRDLKN 1596
Cdd:PTZ00121 1779 AVIEEELDEED 1789
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
944-1654 |
1.66e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 1.66e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 944 LEESFQQLQqTLAEEQHKnqllQEELGALQLRLQALEQETRDGGQEYVVKEVLRIEPDRA-QEDEVLQLREELEALRRQK 1022
Cdd:TIGR02169 193 IDEKRQQLE-RLRREREK----AERYQALLKEKREYEGYELLKEKEALERQKEAIERQLAsLEEELEKLTEEISELEKRL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1023 GAREAEVLLLQQRVAALAAEKS-RVQEKVTEREVVKLQNDPQLEA---EYRRLQEEHQREGTLREKQEEELSFLQAKLRR 1098
Cdd:TIGR02169 268 EEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAEkerELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1099 LEKERA--MAEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSG-QREKTELLRKIWALEEENAKVVVQ-----E 1170
Cdd:TIGR02169 348 ERKRRDklTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKlKREINELKRELDRLQEELQRLSEEladlnA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1171 KVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEvKEVTKEVIKYTtdpETEQELQRLR 1250
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE-KELSKLQRELA---EAEAQARASE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1251 EEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQ-----------------VQTREVVQEILQFQEDpqtKKEVESLRIQL 1313
Cdd:TIGR02169 504 ERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERyataievaagnrlnnvvVEDDAVAKEAIELLKR---RKAGRATFLPL 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1314 SEEQKKQVDLEgerasqeekikrkeeelAQGKERVVRQEVVQYEDEPDLRAEV------TAFTNSIDAELRQIDK----- 1382
Cdd:TIGR02169 581 NKMRDERRDLS-----------------ILSEDGVIGFAVDLVEFDPKYEPAFkyvfgdTLVVEDIEAARRLMGKyrmvt 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1383 LHVELRR---------LQHRRAELERQLEELERERQARRAAELEVQR--LQQRLAALEQE--EAKTGEKVTHTQKVVLQQ 1449
Cdd:TIGR02169 644 LEGELFEksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELssLQSELRRIENRldELSQELSDASRKIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1450 DPQQ-TREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEkAEIKEKVVFSESVQVEKGDTEQEIQRLKksLEEESQSK 1528
Cdd:TIGR02169 724 EIEQlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE-ARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAEL 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1529 RELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITtidsgTHLNS 1608
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL-----EELEA 875
|
730 740 750 760
....*....|....*....|....*....|....*....|....*.
gi 112421039 1609 RLWSLEKELDDLKKMSKDKDLEIDELQRRLGSVAVKREQRENHLRR 1654
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
723-1593 |
4.99e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 4.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 723 LQSARAAYDEYCSGYNRVLQ-----FLAKTPSYEPQETDSL---GQMETKLKNQKNLLDELASREQEVQKVYADSQQYQQ 794
Cdd:TIGR02169 122 IHDFLAAAGIYPEGYNVVLQgdvtdFISMSPVERRKIIDEIagvAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLE 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 795 AVKDYELEAEKLRSLLD---------LENGRNSHVNKRARLQSPAAKVKEEEAALAAKFTEvnaiNRQRLQNLEFALNLL 865
Cdd:TIGR02169 202 RLRREREKAERYQALLKekreyegyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISE----LEKRLEEIEQLLEEL 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 866 RQQPEAGVTHETLQ-GGKLSSGMEETWKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQgpQESLVRKEVLKKVPDPAL 944
Cdd:TIGR02169 278 NKKIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE--IEELEREIEEERKRRDKL 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 945 EESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQETRDGGQEyvvKEVLRIEPDRAQeDEVLQLREELEALRRQKGA 1024
Cdd:TIGR02169 356 TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE---INELKRELDRLQ-EELQRLSEELADLNAAIAG 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1025 REAEVLLLQQRVAALAAEksrVQEKVTEREVVKLQNDpQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKE-- 1102
Cdd:TIGR02169 432 IEAKINELEEEKEDKALE---IKKQEWKLEQLAADLS-KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvr 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1103 ---------RAMAEGKI-TVKEVLKVEKDAAVEREV------------NDLTRQYEDEAAKARSGQREKTELLRKIWALE 1160
Cdd:TIGR02169 508 ggraveevlKASIQGVHgTVAQLGSVGERYATAIEVaagnrlnnvvveDDAVAKEAIELLKRRKAGRATFLPLNKMRDER 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1161 EEnakvvvqekvreivrPDPKAESEVANLRLELVEQERKFRGAEEQL---KSYQSELEALRNRGPQVEVKEVTKEVIK-- 1235
Cdd:TIGR02169 588 RD---------------LSILSEDGVIGFAVDLVEFDPKYEPAFKYVfgdTLVVEDIEAARRLMGKYRMVTLEGELFEks 652
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1236 -------------YTTDPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEI----QALKDTKPQVQTREVVQEILQfQE 1298
Cdd:TIGR02169 653 gamtggsraprggILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLdelsQELSDASRKIGEIEKEIEQLE-QE 731
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1299 DPQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVvrqEVVQYEDEPDLRAEVTAFTNSIDAELR 1378
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL---NDLEARLSHSRIPEIQAELSKLEEEVS 808
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1379 QIDKLHVEL-RRLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQ---T 1454
Cdd:TIGR02169 809 RIEARLREIeQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdlK 888
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1455 REHALLRAQLEEERHRRQLLEGELEPLRRKLAAL-EKAEIKEkvvfsesvqvekgDTEQEIQRLKKSLEEESQ---SKRE 1530
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELkAKLEALE-------------EELSEIEDPKGEDEEIPEeelSLED 955
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 112421039 1531 LDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRD 1593
Cdd:TIGR02169 956 VQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-1217 |
8.24e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 8.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 467 QYRSVRQKATGSKHALQQRHEVLRTENPGDASDLQGRQ-LLAGLDKVASDLDRQEKAITGILRPPLEQGRAIEDSAERAK 545
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 546 GLKNITNELL-QIEPEKTQCTAECEAFVQALPASgtapllktrvedtNQKYERLVWLLEAAQEKVDVANRLENSLQRGRE 624
Cdd:TIGR02168 330 SKLDELAEELaELEEKLEELKEELESLEAELEEL-------------EAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 625 LLASYENRLiqDDTMPESGHVLDSKRQELEAMASELQAHKslLGEVEQNLQVAKQCSSSLASRFQEHCPDLERQEAEVHK 704
Cdd:TIGR02168 397 SLNNEIERL--EARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 705 LNQRFNNLSQQVERRAQSLQSARAAYDEYcSGYNRVLQFLAKTPSYEPQETDSLGQ-METKLKNQKNLLDELASREQEVq 783
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENL-EGFSEGVKALLKNQSGLSGILGVLSElISVDEGYEAAIEAALGGRLQAV- 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 784 kVYADSQQYQQAVkDYELEAEKLRSL---LDLENGRNSHVNKRARLQSpaakvKEEEAALAAKFTEVNAINRQRLQ---- 856
Cdd:TIGR02168 551 -VVENLNAAKKAI-AFLKQNELGRVTflpLDSIKGTEIQGNDREILKN-----IEGFLGVAKDLVKFDPKLRKALSyllg 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 857 ------NLEFALNLLRQQPeAGVTHETLQGGKLSSGMEETWKIKKELEEEIERRQ----------QLENEVKSAQEEIQT 920
Cdd:TIGR02168 624 gvlvvdDLDNALELAKKLR-PGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRReieeleekieELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 921 LKDQgpQESLVRKEVLKKVPDPALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQEtrdggqeyVVKEVLRIEP 1000
Cdd:TIGR02168 703 LRKE--LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE--------IEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1001 DRAQEDEVLQLREELEALRRQkgaREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQNDPQLEAEYRRLQEEHQRegt 1080
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQ---LKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ--- 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1081 lREKQEEELSFLQAKLRRLEKERAMAEGKITVKEVLKvekdAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALE 1160
Cdd:TIGR02168 847 -IEELSEDIESLAAEIEELEELIEELESELEALLNER----ASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112421039 1161 EENAKVVVQEKVREiVRPDPKAE--SEVANLRLELVEQ-----ERKFRGAEEQLKSYQSELEAL 1217
Cdd:TIGR02168 922 EKLAQLELRLEGLE-VRIDNLQErlSEEYSLTLEEAEAlenkiEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
694-1545 |
1.61e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.70 E-value: 1.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 694 DLERQEAEVHKLNQRFNNLSQQVERrAQSLQSARAAYDEYCSGY--NRVLQFLAKTPSYEPQETDSLGQMETKLKNQKNL 771
Cdd:TIGR02168 187 NLDRLEDILNELERQLKSLERQAEK-AERYKELKAELRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQEL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 772 LDELASREQEVQKVYADSQQYQQAVKDY-----ELEAEKLR---SLLDLENGRNSHVNKRARLQSPAAKVKEEEAALAAK 843
Cdd:TIGR02168 266 EEKLEELRLEVSELEEEIEELQKELYALaneisRLEQQKQIlreRLANLERQLEELEAQLEELESKLDELAEELAELEEK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 844 FTEVNAiNRQRLQNLEFALNLLRQQPEAGVTHETLQGGKLSSGMEETwkiKKELEEEIERRQQLENEVKSAQEEIQTLKD 923
Cdd:TIGR02168 346 LEELKE-ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL---ELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 924 QGPQESLVRKEVLKKvpdpALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQEtRDGGQEYVVKEVLRIEPDRA 1003
Cdd:TIGR02168 422 EIEELLKKLEEAELK----ELQAELEELEEELEELQEELERLEEALEELREELEEAEQA-LDAAERELAQLQARLDSLER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1004 QEDEVLQLREELEALRRQKGAREAEVLLLQQRV--------AALAAEKSRVQEKVTERevvklqndpqlEAEYRRLQEeh 1075
Cdd:TIGR02168 497 LQENLEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeaAIEAALGGRLQAVVVEN-----------LNAAKKAIA-- 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1076 qregTLREKQEEELSFLQAKLRR----LEKERAMAEGKITVKEVLK--VEKDAAVEREVNDLTRQY------EDEAAKAR 1143
Cdd:TIGR02168 564 ----FLKQNELGRVTFLPLDSIKgteiQGNDREILKNIEGFLGVAKdlVKFDPKLRKALSYLLGGVlvvddlDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1144 SGQREKT------ELLRKIWAL--EEENAKVVVQEKVREIvrpdpkaesevANLRLELVEQERKFRGAEEQLKSYQSELE 1215
Cdd:TIGR02168 640 KLRPGYRivtldgDLVRPGGVItgGSAKTNSSILERRREI-----------EELEEKIEELEEKIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1216 ALRNRGPQVEVKEVTKEvikyTTDPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKD--TKPQVQTREVVQEI 1293
Cdd:TIGR02168 709 ELEEELEQLRKELEELS----RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEErlEEAEEELAEAEAEI 784
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1294 LQFQED-PQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGK---ERVVRQEVVQYEDEPDLRAEVTAF 1369
Cdd:TIGR02168 785 EELEAQiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATErrlEDLEEQIEELSEDIESLAAEIEEL 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1370 TNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERErqaRRAAELEVQRLQQRLAALEQEEAKTGEKVTHTqKVVLQQ 1449
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEE---LRELESKRSELRRELEELREKLAQLELRLEGL-EVRIDN 940
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1450 DPQQTREHALLRAQLEEERHRrqLLEGELEPLRRKLAALEKAEIKEKVVFSESvqvekgdtEQEIQRLKKSLEEESQSKR 1529
Cdd:TIGR02168 941 LQERLSEEYSLTLEEAEALEN--KIEDDEEEARRRLKRLENKIKELGPVNLAA--------IEEYEELKERYDFLTAQKE 1010
|
890
....*....|....*.
gi 112421039 1530 ELDSEVTRLEAKLSEL 1545
Cdd:TIGR02168 1011 DLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
653-1491 |
3.41e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 3.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 653 LEAMASELQAHKSLLGEVEQNLQVAKQcSSSLASRFQEHCPDLErqEAEVHKLNQRFNNLSQQVERRAQSLQSARAAYDE 732
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKSLER-QAEKAERYKELKAELR--ELELALLVLRLEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 733 YCSGYNRVLQFLAKTPSYEPQETDSLGQMETKLKNQKNLLDELASREQEVQKVYADSQQyQQAVKDYELEAEKLRSLLDL 812
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER-QLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 813 ENgrnshvnkRARLQSPAAKVKEEEAALAAKFTEVNAInrqrLQNLEFALNLLRQQPEAGVTHETLQGGKLSSGMEETWK 892
Cdd:TIGR02168 337 EE--------LAELEEKLEELKEELESLEAELEELEAE----LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 893 IKKELEEEIERRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPDPALEESFQQL---QQTLAEEQHKNQLLQEEL 969
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALeelREELEEAEQALDAAEREL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 970 GALQLRLQALEQ-----ETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELE-ALRRQKGAREAEVLL--LQQRVAALAA 1041
Cdd:TIGR02168 485 AQLQARLDSLERlqenlEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEaAIEAALGGRLQAVVVenLNAAKKAIAF 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1042 EKSRVQEKVT--EREVVKLQNDPQLEAEYRRLQEEHQREGTLREKQEEELSF--------------------LQAKLRR- 1098
Cdd:TIGR02168 565 LKQNELGRVTflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnaleLAKKLRPg 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1099 -----LEKERAMAEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKVVVQEkvr 1173
Cdd:TIGR02168 645 yrivtLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL--- 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1174 eivrpdPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRnrgpQVEVKEVTKEVIKYTTDPETEQELQRLREEI 1253
Cdd:TIGR02168 722 ------EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE----AEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1254 mdkTRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEILQFQEDpQTKKEVESLRIQLSEEQKKQVDLEGERASQEEK 1333
Cdd:TIGR02168 792 ---EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA-ATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1334 IKRKEEELAQGKERVVRQEvvqyEDEPDLRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEElererqarra 1413
Cdd:TIGR02168 868 IEELESELEALLNERASLE----EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG---------- 933
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1414 AELEVQRLQQRLAALEQEEAktGEKVTHTQKVVLQQDPQQTREHALLRA-------------QLEEERHRRQLLEGELEP 1480
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTL--EEAEALENKIEDDEEEARRRLKRLENKikelgpvnlaaieEYEELKERYDFLTAQKED 1011
|
890
....*....|.
gi 112421039 1481 LRRKLAALEKA 1491
Cdd:TIGR02168 1012 LTEAKETLEEA 1022
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
889-1654 |
3.19e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 3.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 889 ETWKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQGPQESL-------VRKEVLKKVPDPALEESFQqLQQTLAEEQHK 961
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKrleeieqLLEELNKKIKDLGEEEQLR-VKEKIGELEAE 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 962 NQLLQEELGALQLRLQALEQETRDGGQEYvvkevlriepdRAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAA 1041
Cdd:TIGR02169 303 IASLERSIAEKERELEDAEERLAKLEAEI-----------DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1042 EKSRVQEKVTE-REVVKlqndpQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEVLKVEK 1120
Cdd:TIGR02169 372 ELEEVDKEFAEtRDELK-----DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1121 DAAV---EREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVE-Q 1196
Cdd:TIGR02169 447 ALEIkkqEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHgT 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1197 ERKFRGAEEQlksYQSELE-ALRNRGPQVEVK--EVTKEVIKYTTD----PETEQELQRLREEIMDKTRLIERCDLEIyq 1269
Cdd:TIGR02169 527 VAQLGSVGER---YATAIEvAAGNRLNNVVVEddAVAKEAIELLKRrkagRATFLPLNKMRDERRDLSILSEDGVIGF-- 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1270 lkqeiqALKDTKPQVQTREVVQEILQfqeDPQTKKEVESLRIQLSeeQKKQVDLEGE---------RASQEEKIKRKEEE 1340
Cdd:TIGR02169 602 ------AVDLVEFDPKYEPAFKYVFG---DTLVVEDIEAARRLMG--KYRMVTLEGElfeksgamtGGSRAPRGGILFSR 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1341 LAQGKERVVRQEVVQYEDE-PDLRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRaelerQLEELERERQARRAAELEV- 1418
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRElSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-----EQLEQEEEKLKERLEELEEd 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1419 -QRLQQRLAALEQEEAKTGEKVthtqkvvlqqdPQQTREHALLRAQLEE-----ERHRRQLLEGELEPLRRKLAALEKAe 1492
Cdd:TIGR02169 746 lSSLEQEIENVKSELKELEARI-----------EELEEDLHKLEEALNDlearlSHSRIPEIQAELSKLEEEVSRIEAR- 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1493 IKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQN 1572
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1573 LQLETRRLQSEIEMAATETRDLKNITtidsgTHLNSRLWSLEKELDDLKKmSKDKDLEIDELQRRLGSVAVKREQRENHL 1652
Cdd:TIGR02169 894 LEAQLRELERKIEELEAQIEKKRKRL-----SELKAKLEALEEELSEIED-PKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
..
gi 112421039 1653 RR 1654
Cdd:TIGR02169 968 RA 969
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
904-1250 |
5.67e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 64.37 E-value: 5.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 904 RQQLENEVKSAQEEIQTLKDQGPQESLVRKEvlkkvpdpaLEESfQQLQQTLAEEQHKNQLLQEELGALQLR-LQALEQE 982
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVERRRK---------LEEA-EKARQAEMDRQAAIYAEQERMAMEREReLERIRQE 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 983 TRDGGQEYVVKEVLRIEPDRAQEDEVLQLReelealRRQKGAREAEVLLLQQRVAALAAEKSR-VQEKVTEREVVKLQND 1061
Cdd:pfam17380 357 ERKRELERIRQEEIAMEISRMRELERLQME------RQQKNERVRQELEAARKVKILEEERQRkIQQQKVEMEQIRAEQE 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1062 PQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAmaegkitvKEVLKVEKDAAVEREVNDLTRQYEDEAAK 1141
Cdd:pfam17380 431 EARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERK--------RKKLELEKEKRDRKRAEEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1142 ARSGQREKTELLRKIWALE-EENAKVVVQEKVREIVRPDPKAESEVANlRLELVEQERKFRGAEEQLKSYQSELEALRnr 1220
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEmEERQKAIYEEERRREAEEERRKQQEMEE-RRRIQEQMRKATEERSRLEAMEREREMMR-- 579
|
330 340 350
....*....|....*....|....*....|
gi 112421039 1221 gpQVEVKEVTKEVIKYTTDPETEQELQRLR 1250
Cdd:pfam17380 580 --QIVESEKARAEYEATTPITTIKPIYRPR 607
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1083-1650 |
6.56e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.31 E-value: 6.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1083 EKQEEELSFLQAKLRRLEKERAMAEgkitvKEVLKVEKdaaVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEE 1162
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLE-----KEVKELEE---LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1163 NAKVvvQEKVREIVRPDPKAEsEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVKEVTKEVIKyttdpET 1242
Cdd:PRK03918 275 IEEL--EEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-----KK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1243 EQELQRLREEIMDKTRLIErcdlEIYQLKQEIQALKDTKPQVQTREVVQEIlqfqedpqtkKEVESLRIQLSEEQKKQVD 1322
Cdd:PRK03918 347 LKELEKRLEELEERHELYE----EAKAKKEELERLKKRLTGLTPEKLEKEL----------EELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1323 LEGERASQEEKIKRKEEEL--AQGKERVVRQEVVQyEDEPDLRAEVTAFTNSIDAELRQIDKLHVELRRlqhrraelerq 1400
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELkkAKGKCPVCGRELTE-EHRKELLEEYTAELKRIEKELKEIEEKERKLRK----------- 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1401 leeLERERQARRAAELEVQRLQQRLAALEQEEAKTGekvthtqKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELE- 1479
Cdd:PRK03918 481 ---ELRELEKVLKKESELIKLKELAEQLKELEEKLK-------KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEk 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1480 --PLRRKLAALEKaeikekvvfsesvqvEKGDTEQEIQRLKKSLEEES-QSKRELDSEVTRLEaklselEFYN-----SK 1551
Cdd:PRK03918 551 leELKKKLAELEK---------------KLDELEEELAELLKELEELGfESVEELEERLKELE------PFYNeylelKD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1552 SSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIDSG-------THLNSRLWSLEKELDDLKKMS 1624
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYeelreeyLELSRELAGLRAELEELEKRR 689
|
570 580
....*....|....*....|....*.
gi 112421039 1625 KDKDLEIDELQRRLGSVAVKREQREN 1650
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
905-1604 |
5.48e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 61.52 E-value: 5.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 905 QQLENEVKSAQEEIQTLKD---QGPQESLVRKEVLKKVpDPALEESFQQLQQTLAEEQHKNQLLQEelgALQLRLQALEQ 981
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLctpCMPDTYHERKQVLEKE-LKHLREALQQTQQSHAYLTQKREAQEE---QLKKQQLLKQL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 982 ETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQND 1061
Cdd:TIGR00618 266 RARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRR 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1062 --PQLEAEYRRLQEEHQREGTLREKQEEELSFLQ--------------------AKLRRLEKERAMAEGKITVKEVLKVE 1119
Cdd:TIGR00618 346 llQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlqqqkttltqklqslcKELDILQREQATIDTRTSAFRDLQGQ 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1120 KDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERK 1199
Cdd:TIGR00618 426 LAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCP 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1200 FrgaEEQLKSYQSELEALRNRGPQVEVKEVTKEVIKY--TTDPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQAL 1277
Cdd:TIGR00618 506 L---CGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQleTSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRS 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1278 KDTKPQVQTREVVQEILQFQEDPQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKErvvrQEVVQYE 1357
Cdd:TIGR00618 583 KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL----QLTLTQE 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1358 DEPDLRAEVTAF-TNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTG 1436
Cdd:TIGR00618 659 RVREHALSIRVLpKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAARE 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1437 EKVTHTQKVVLQQDPQQTREHALLRAQLEEER-------HRRQLLEGELEPLRRKLA------ALEKAEIKEKVVFSESV 1503
Cdd:TIGR00618 739 DALNQSLKELMHQARTVLKARTEAHFNNNEEVtaalqtgAELSHLAAEIQFFNRLREedthllKTLEAEIGQEIPSDEDI 818
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1504 QV------------------EKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKS-----SKELDFLR 1560
Cdd:TIGR00618 819 LNlqcetlvqeeeqflsrleEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKiqfdgDALIKFLH 898
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 112421039 1561 EENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIDSGT 1604
Cdd:TIGR00618 899 EITLYANVRLANQSEGRFHGRYADSHVNARKYQGLALLVADAYT 942
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
584-1262 |
5.61e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 5.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 584 LKTRVEDTNQKYERLVWLLEAAQEKVDvanRLENSLQRGRELLASYENRLIQDDTmpesghVLDSKRQELEAMASELQAH 663
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLE---ELESKLDELAEELAELEEKLEELKE------ELESLEAELEELEAELEEL 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 664 KSLLGEVEQNLQVAKQCSSSLASRFQEHCPDLERQEAEVHKLNQRFNNLSQQVERRAQSLQSA-RAAYDEYCSGYNRVLQ 742
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 743 FLAKTPSY----EPQETDSLGQMETKLKNQKNLLDELASREQEVQKVYADSQQYQQAVKDYELEAEKLRSLLDL------ 812
Cdd:TIGR02168 451 ELQEELERleeaLEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlselis 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 813 -ENGRNSHVNK--RARLQSPAakVKEEEAALAAkfteVNAINRQRLQNLEF-ALNLLRQQPEAGVTHETLQGGKLSSGme 888
Cdd:TIGR02168 531 vDEGYEAAIEAalGGRLQAVV--VENLNAAKKA----IAFLKQNELGRVTFlPLDSIKGTEIQGNDREILKNIEGFLG-- 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 889 etwKIKKELEEEIERRQQLENE------VKSAQEEIQTLKDQGPQESLVRKE--------VLKKVPDPAlEESFQQLQQT 954
Cdd:TIGR02168 603 ---VAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPGYRIVTLDgdlvrpggVITGGSAKT-NSSILERRRE 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 955 LAEEQHKNQLLQEELGALQLRLQALEQETRDGgqeyvvkevlriepdraqEDEVLQLREELEALRRQKGAREAEVLLLQQ 1034
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEEL------------------EEELEQLRKELEELSRQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1035 RVAALAAEKSRVQEKVTEREVVKLQNDPQLEAEYRRLQEEHQREGTLREK----------QEEELSFLQAKLRRLEKERA 1104
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQieqlkeelkaLREALDELRAELTLLNEEAA 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1105 MAEGKITVKEvlkvEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEE-----NAKVVVQEKVREIVRPD 1179
Cdd:TIGR02168 821 NLRERLESLE----RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEleallNERASLEEALALLRSEL 896
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1180 PKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQV-----EVKEVTKEVIKyTTDPETEQELQRLREEIM 1254
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqerlsEEYSLTLEEAE-ALENKIEDDEEEARRRLK 975
|
....*...
gi 112421039 1255 DKTRLIER 1262
Cdd:TIGR02168 976 RLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
583-1319 |
1.53e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 583 LLKTRVEDTNQKYERLVWLLEAAQEKVDVANRLENSLQRGRELLASYENRLiqddtmpesghvldskRQELEAMASELQA 662
Cdd:TIGR02168 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL----------------EEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 663 HKSLLGEVEQNLQVAKQCSSSL--------------ASRFQEHCPDLERQEAEVHKLNQRFNNLSQQVERRAQSLQSARA 728
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLerqleeleaqleelESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 729 AYDEYCSGYNRVLQFLAKTPSYEPQETDSLGQMETKLK----NQKNLLDELASREQEVQKVYADSQQYQQAVKDYELEaE 804
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLErledRRERLQQEIEELLKKLEEAELKELQAELEELEEELE-E 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 805 KLRSLLDLENGRNSHVNKRARLQSPAAKVKEEEAALAAKFTEVNAINRQRLQNLEFALNLLRQQPEAGVTHetlqgGKLS 884
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL-----GVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 885 SGM--EETWKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQG------PQESLVRKEVLKKVPDPALEESFQQLQQTLA 956
Cdd:TIGR02168 527 ELIsvDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNElgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 957 EEQHKNQLlqeeLGALQLRL----------QALEQETR-DGGQEYVVKEVLRIEP-------DRAQEDEVLQLREELEAL 1018
Cdd:TIGR02168 607 LVKFDPKL----RKALSYLLggvlvvddldNALELAKKlRPGYRIVTLDGDLVRPggvitggSAKTNSSILERRREIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1019 RRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQNDPQL---EAEYRRLQEEHQREGTLREKQEEELSFLQAK 1095
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1096 LRRLEKERAMAEGKITVKEvlkvEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELlrKIWALEEENAKVVVQEKVREI 1175
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKALREALDELRAELTLL--NEEAANLRERLESLERRIAAT 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1176 VRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNrgpQVEVKEVTKEVIKYTTDpETEQELQRLREEIMD 1255
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLN---ERASLEEALALLRSELE-ELSEELRELESKRSE 912
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112421039 1256 KTRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEILQFQEDPQTKKEVESLRIQLSEEQKK 1319
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKR 976
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1241-1595 |
2.92e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 2.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1241 ETEQELQRLREEImdktrliERCDLEIYQLKQEIQALKDtkpQVQTREVVQEiLQFQEDpQTKKEVESLRIQLSEEQKKQ 1320
Cdd:COG1196 176 EAERKLEATEENL-------ERLEDILGELERQLEPLER---QAEKAERYRE-LKEELK-ELEAELLLLKLRELEAELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1321 VDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDE-PDLRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELer 1399
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELElEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL-- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1400 qLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVL----QQDPQQTREHALLRAQLEEERHRRQLLE 1475
Cdd:COG1196 322 -EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLeaeaELAEAEEELEELAEELLEALRAAAELAA 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1476 GELEPLRRKLAALEKAEIKEKvvfsesvqvEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKSSKE 1555
Cdd:COG1196 401 QLEELEEAEEALLERLERLEE---------ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 112421039 1556 LDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLK 1595
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
213-387 |
3.50e-08 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 55.91 E-value: 3.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 213 LQDYMQRCTNELYWLDQQAKGRMQYDWSDRNLDYPSRRRQYENFiNRNLEAKEERINKLHTEGDQLLTAEHPGRNSIEAH 292
Cdd:cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEAL-EAELAAHEERVEALNELGEQLIEEGHPDAEEIQER 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 293 MEAVHAEWKEYLNLLICEESHLKYMEDYHQFHKDMKDAQELLRKVDSDLNQKYSPdfKDRYQIELLLRELDDQEKALDKY 372
Cdd:cd00176 81 LEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLG--KDLESVEELLKKHKELEEELEAH 158
|
170
....*....|....*
gi 112421039 373 EDVVRGLQRRGQQVV 387
Cdd:cd00176 159 EPRLKSLNELAEELL 173
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1373-1698 |
4.74e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 4.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1373 IDAELRQIDkLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQK---VVLQQ 1449
Cdd:COG1196 218 LKEELKELE-AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1450 DPQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEikekvvfsESVQVEKGDTEQEIQRLKKSLEEESQSKR 1529
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL--------EELEEELEEAEEELEEAEAELAEAEEALL 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1530 ELDSEvtRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIDSGTHLNSR 1609
Cdd:COG1196 369 EAEAE--LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1610 LWSLEKELDDLKKmskdkdlEIDELQRRLGSVAVKREQRENHLRRSIVVIDPDTGRELSPEEAHRAGLIDWKMFVKLRSQ 1689
Cdd:COG1196 447 AAEEEAELEEEEE-------ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
....*....
gi 112421039 1690 ECDWEEISV 1698
Cdd:COG1196 520 RGLAGAVAV 528
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1006-1640 |
9.18e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 9.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1006 DEVLQLREELEALRRQKGAreaevllLQQRVAALAAEKSRVQEKVTEREVvklqNDPQLEAEYRRLQEEHQREGTLREKQ 1085
Cdd:TIGR02168 232 LRLEELREELEELQEELKE-------AEEELEELTAELQELEEKLEELRL----EVSELEEEIEELQKELYALANEISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1086 EEELSFLQAKLRRLEKERAMAEGKITV---KEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEE 1162
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEElesKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1163 nakvvVQEKVREIVrpdpKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVKEVTKEVikyttdPET 1242
Cdd:TIGR02168 381 -----LETLRSKVA----QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAEL------EEL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1243 EQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQVQTR-EVVQEILQFQEDPQtkkeveslriqlseEQKKQV 1321
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARlDSLERLQENLEGFS--------------EGVKAL 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1322 DLEGERasqeekikrkeeeLAQGKERVVRQEVVQYEDEPDLRAEVTAFTNSIDAELRQIDKLHVE-LRRLQHRRAELERQ 1400
Cdd:TIGR02168 512 LKNQSG-------------LSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAfLKQNELGRVTFLPL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1401 LEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHT--QKVVLQQDPQQtrehALLRAQLEEERHRRQLLEGEL 1478
Cdd:TIGR02168 579 DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllGGVLVVDDLDN----ALELAKKLRPGYRIVTLDGDL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1479 epLRRKLAALEKAEIKEKVVFSesvqvekgdTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKSSKELDF 1558
Cdd:TIGR02168 655 --VRPGGVITGGSAKTNSSILE---------RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1559 LREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIdsgthLNSRLWSLEKELDDLKKMSKDKDLEIDELQRRL 1638
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE-----LEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
..
gi 112421039 1639 GS 1640
Cdd:TIGR02168 799 KA 800
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
985-1575 |
1.02e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 985 DGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQKG---AREAEVlllQQRVAALAAEKSRVQEKVTEREVVKLQND 1061
Cdd:PRK03918 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEkfiKRTENI---EELIKEKEKELEEVLREINEISSELPELR 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1062 PQLEAEYRRLQEEHQREGTLREKQEEELSF------LQAKLRRLEKERAMAEGKIT-----VKEVLKVEKDAAVEREVND 1130
Cdd:PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLegskrkLEEKIRELEERIEELKKEIEeleekVKELKELKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1131 LTRQYEDEAAKarsGQREKTELLRKIWALEEENAKVvvqEKVREIVRPDPKAESEVANLRLELVEQERKFrgaeEQLKSY 1210
Cdd:PRK03918 301 FYEEYLDELRE---IEKRLSRLEEEINGIEERIKEL---EEKEERLEELKKKLKELEKRLEELEERHELY----EEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1211 QSELEALRNRGPQVEVKEVTKEVikyttdPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQ--VQTRE 1288
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEKEL------EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpVCGRE 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1289 VVQEilqfqedpQTKKEVESLRIQLSEEQKKQVDLEgERASQEEKIKRKEEELAQGKERVVRQEVVqYEDEPDLRAEVTA 1368
Cdd:PRK03918 445 LTEE--------HRKELLEEYTAELKRIEKELKEIE-EKERKLRKELRELEKVLKKESELIKLKEL-AEQLKELEEKLKK 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1369 FT-NSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVL 1447
Cdd:PRK03918 515 YNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERL 594
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1448 QQDPQQTREHALLR---AQLEEERHRRQLLEGELEPLRRKLAALEKaEIKEKvvfsesvqvekgdtEQEIQRLKKSLEEE 1524
Cdd:PRK03918 595 KELEPFYNEYLELKdaeKELEREEKELKKLEEELDKAFEELAETEK-RLEEL--------------RKELEELEKKYSEE 659
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 112421039 1525 -----SQSKRELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQL 1575
Cdd:PRK03918 660 eyeelREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK 715
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
987-1595 |
1.06e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.05 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 987 GQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVterEVVKLQNDPQLEA 1066
Cdd:pfam15921 238 GRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL---EIIQEQARNQNSM 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1067 EYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKevlKVEKDAaVEREVNDLTRQYEDEAAKARSGQ 1146
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEA---RTERDQ-FSQESGNLDDQLQKLLADLHKRE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1147 RE---KTELLRKIWALEEENAkVVVQEKVREIvrpdPKAESEVANLRLELVEQERKFRGA-EEQLKSYQSELEALRNRGP 1222
Cdd:pfam15921 391 KElslEKEQNKRLWDRDTGNS-ITIDHLRREL----DDRNMEVQRLEALLKAMKSECQGQmERQMAAIQGKNESLEKVSS 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1223 QVEVKEVTKEVI---------KYTTDPETEQELQRLREEIMDKTRLIERCDLEIYQLK-------QEIQALKDTKPQVQT 1286
Cdd:pfam15921 466 LTAQLESTKEMLrkvveeltaKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRsrvdlklQELQHLKNEGDHLRN 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1287 REVVQEILQFQEdPQTKKEVESLRIQLseEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPD----- 1361
Cdd:pfam15921 546 VQTECEALKLQM-AEKDKVIEILRQQI--ENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDakire 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1362 LRAEVTaftnsiDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRaaelEVQRLQQRLAALEQE-EAKTGEKVT 1440
Cdd:pfam15921 623 LEARVS------DLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN----ELNSLSEDYEVLKRNfRNKSEEMET 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1441 HTQKVVLQQDPQQTrehallraqleeerhrrqllegELEPLRRKLAALEKAEikekvvfSESVQVEKGdteqeiqrlkks 1520
Cdd:pfam15921 693 TTNKLKMQLKSAQS----------------------ELEQTRNTLKSMEGSD-------GHAMKVAMG------------ 731
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112421039 1521 LEEESQSKReldSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLK 1595
Cdd:pfam15921 732 MQKQITAKR---GQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
916-1536 |
1.14e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 1.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 916 EEIQTLKDQGPQESLVRKEVLKKVPDPA-LEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQETRDGGQEYVVKE 994
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKkAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEA 1228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 995 VLRIEPDRAQEDEVLQLREELEALRRQKgAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQNDPQLEAEYRRLQE- 1073
Cdd:PTZ00121 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEa 1307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1074 -----EHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEVLKVEKDAAVEREVNDLTRQYED----EAAKARS 1144
Cdd:PTZ00121 1308 kkkaeEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAkkkaDAAKKKA 1387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1145 GQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEqLKSYQSELEALRNRGPQV 1224
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE-AKKKAEEAKKAEEAKKKA 1466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1225 EVKEVTKEVIKYTTDPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKP-------------QVQTREVVQ 1291
Cdd:PTZ00121 1467 EEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAdeakkaeeakkadEAKKAEEKK 1546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1292 EILQFQEDPQTKKEVESLRIQ---LSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTA 1368
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEeakKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1369 FTNSIDAELRQIDKLHVELRR------------------LQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQ 1430
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKkaeelkkaeeenkikaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1431 EEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEplRRKLAALEKAEIK--------EKVVFSES 1502
Cdd:PTZ00121 1707 LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE--KKKIAHLKKEEEKkaeeirkeKEAVIEEE 1784
|
650 660 670
....*....|....*....|....*....|....
gi 112421039 1503 VQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVT 1536
Cdd:PTZ00121 1785 LDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGN 1818
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
753-1586 |
2.01e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 753 QETDSLGQMETKLKNQKNLLDELASREQEVQKVYADSQ------QYQQAVKDYELEAEKLRSLLDLENGRNSHVNKRARL 826
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEkleleeEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 827 QSPAAKVKEEEAALAAKFTEVNAINRQRLQNLEFALNLLRQQPEAGVTHETLQGGKLSSGMEETWKIKKELEEEIERRQQ 906
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 907 LENEVKSAQEEIQTLKDQGPQESLVRKEvlkkvpdpaLEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQETRDG 986
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEK---------LEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 987 GQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQNDPQLEA 1066
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1067 EYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKEramAEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQ 1146
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIIS---AHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLV 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1147 REKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKFRGA-------EEQLKSYQSELEALRN 1219
Cdd:pfam02463 568 RALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVvegilkdTELTKLKESAKAKESG 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1220 RGPQVEVKEVTKEVIKYTTDpETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEILQFQED 1299
Cdd:pfam02463 648 LRKGVSLEEGLAEKSEVKAS-LSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1300 PQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPdLRAEVTAFTNSIDAELRQ 1379
Cdd:pfam02463 727 VQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK-VEEEKEEKLKAQEEELRA 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1380 IDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHAL 1459
Cdd:pfam02463 806 LEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLK 885
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1460 LRAQLEEERHRRQLLegELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLK---KSLEEESQSKRELDSEVT 1536
Cdd:pfam02463 886 DELESKEEKEKEEKK--ELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLeeaDEKEKEENNKEEEEERNK 963
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 112421039 1537 RLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEM 1586
Cdd:pfam02463 964 RLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIE 1013
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
641-1143 |
3.62e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.51 E-value: 3.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 641 ESGHVLDSKRQELEamaSELQAHKSLLGEVEQNLQVAKQCSSSLASRFQEHCPDLERQEAEV---HKLNQRF-------- 709
Cdd:pfam15921 335 EAKRMYEDKIEELE---KQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELsleKEQNKRLwdrdtgns 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 710 ---NNLSQQVERR---AQSLQSARAAYDEYCSGYNRVLQFLAKTPSYEPQETDSL-GQMETKLKNQKNLLDELASR---- 778
Cdd:pfam15921 412 itiDHLRRELDDRnmeVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLtAQLESTKEMLRKVVEELTAKkmtl 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 779 ---EQEVQKVYADSQQYQQAVKDYELEAEKLRSLLDLENGRNSHvnkrarlqspaakVKEEEAALAAKFTEVNAINRQrL 855
Cdd:pfam15921 492 essERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQH-------------LKNEGDHLRNVQTECEALKLQ-M 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 856 QNLEFALNLLRQQPEaGVTHETLQGGKLSSGMEetwkikkeleeeiERRQQLENEVKSAQEEIQTLKDQGPQESLVRKEV 935
Cdd:pfam15921 558 AEKDKVIEILRQQIE-NMTQLVGQHGRTAGAMQ-------------VEKAQLEKEINDRRLELQEFKILKDKKDAKIREL 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 936 LKKVPDPALEE------SFQQLQQTLAEEQHKNQLLQE------ELGALQLRLQALEQETRDGGQEY-VVKEVLRIEPDR 1002
Cdd:pfam15921 624 EARVSDLELEKvklvnaGSERLRAVKDIKQERDQLLNEvktsrnELNSLSEDYEVLKRNFRNKSEEMeTTTNKLKMQLKS 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1003 AQEdEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQNDPQ---LEAEYRRLQEEHQREG 1079
Cdd:pfam15921 704 AQS-ELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEkhfLKEEKNKLSQELSTVA 782
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112421039 1080 TLREKQEEELSFLQAKLRRLEKERAMAEgkitvkevLKVEKDAAVEREVNDLTRQYEDEAAKAR 1143
Cdd:pfam15921 783 TEKNKMAGELEVLRSQERRLKEKVANME--------VALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1001-1221 |
4.21e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 4.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1001 DRAQE--DEVLQLREELEALRRQkgareAEVLL-LQQRVAALAAEKSRVQEKVTEREVVKLQNDPQ----LEAEYRRLQE 1073
Cdd:COG4913 228 DALVEhfDDLERAHEALEDAREQ-----IELLEpIRELAERYAAARERLAELEYLRAALRLWFAQRrlelLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1074 EHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGkitvkevlkvEKDAAVEREVNDLTRQYeDEAAKARSGQREKTELL 1153
Cdd:COG4913 303 ELARLEAELERLEARLDALREELDELEAQIRGNGG----------DRLEQLEREIERLEREL-EERERRRARLEALLAAL 371
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 112421039 1154 rkiwALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRG 1221
Cdd:COG4913 372 ----GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1004-1653 |
4.76e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.98 E-value: 4.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1004 QEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQNDPQLEAEYRRLQEEHQREGTLRE 1083
Cdd:pfam02463 196 KLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1084 KQEEELSFLQAKLRRLEKERAMAEGKITVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEEN 1163
Cdd:pfam02463 276 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1164 AKVVVQEKVREIVRPDPKA-------ESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVKEVTKEVIKY 1236
Cdd:pfam02463 356 EEEEELEKLQEKLEQLEEEllakkklESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1237 TTDPETEQELQRLREEIMDKTRLIERCD-LEIYQLKQEIQALKDTKPQVQTREVVQEILQFQEDPQTKKEVESLRIQLSE 1315
Cdd:pfam02463 436 EESIELKQGKLTEEKEELEKQELKLLKDeLELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLAL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1316 EQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTAFTNSIDAELRqidKLHVELRRLQHRRA 1395
Cdd:pfam02463 516 IKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGAR---KLRLLIPKLKLPLK 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1396 ELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEerhrrqLLE 1475
Cdd:pfam02463 593 SIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSE------VKA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1476 GELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSElEFYNSKSSKE 1555
Cdd:pfam02463 667 SLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKIN-EELKLLKQKI 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1556 LDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIDsgthLNSRLWSLEKELDDLKKMSKDKDLEIDELQ 1635
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEE----KEEKLKAQEEELRALEEELKEEAELLEEEQ 821
|
650
....*....|....*...
gi 112421039 1636 RRLGSVAVKREQRENHLR 1653
Cdd:pfam02463 822 LLIEQEEKIKEEELEELA 839
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
737-1319 |
5.73e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 5.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 737 YNRVLQFLAKTPSYEPQETDSLGQMETKLKNQKNLLDELASREQEVQKVYADSQQYQQAVKDYELEAEKL-----RSLLD 811
Cdd:TIGR00618 217 YHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInrarkAAPLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 812 LENGRNSHVNKR-----ARLQSPAAKVKEEEAALAAKFTEVNAINRQR--LQNLEFALNLLRQQPEAG------------ 872
Cdd:TIGR00618 297 AHIKAVTQIEQQaqrihTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRrlLQTLHSQEIHIRDAHEVAtsireiscqqht 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 873 -----------VTHETLQGGKLSSGMEETWKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLK--KV 939
Cdd:TIGR00618 377 ltqhihtlqqqKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQceKL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 940 PDPALEESFQQLQQTLAEEQHKNQLLQEE------LGALQLRLQALEQETRDGGQEYVVKEVLRIEPDRAQ------EDE 1007
Cdd:TIGR00618 457 EKIHLQESAQSLKEREQQLQTKEQIHLQEtrkkavVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTrrmqrgEQT 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1008 VLQLREELE-------ALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKV--TEREVVKLQNDPQLEAEYRRLQEEHQRE 1078
Cdd:TIGR00618 537 YAQLETSEEdvyhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIpnLQNITVRLQDLTEKLSEAEDMLACEQHA 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1079 GTLREKQEEELSFLQAKLRRLEKERAMAEGKITvkevlKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWA 1158
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRLHLQQCSQELALKLTALH-----ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQ 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1159 LEEENAKVV-VQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVKEVTKEVIKYT 1237
Cdd:TIGR00618 692 LTYWKEMLAqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1238 TDPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEILQFQEDPQTKKEVESLRIQLSEEQ 1317
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQL 851
|
..
gi 112421039 1318 KK 1319
Cdd:TIGR00618 852 LK 853
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
794-1406 |
1.26e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 794 QAVKDYELEAEKLRSLLDLENGRNSHVNKRARLQSPAAKVKEEEAALAAKFTEVNAInRQRLQNLEFALNLLRQQPEAGV 873
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-RLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 874 THETLQGGKLSSGMEETWKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKkvpdpALEESFQQLQQ 953
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA-----ELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 954 TLAEEQHKNQLLQEELGALQLRLQALEQETRDGGQEYVVKEVLRIEpDRAQEDEVLQLREELEALRRQKGAREAEVLLLQ 1033
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-LERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1034 QRVAALAAEKSRVQEKVTEREVVKLQNDPQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKE---RAMAEGKI 1110
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrGLAGAVAV 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1111 TVKEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKvvvQEKVREIVRPDPKAESEVANLR 1190
Cdd:COG1196 529 LIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIR---ARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1191 LELVEQERKFRGAEEQLKSYQSELEALRN-RGPQVEVKEVTKEVIKYTTDPETEQELQRLREEIMDKTRLIERCDLEIYQ 1269
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1270 LKQEIQALKDTKPQVQTREVVQEILQfqedpqtkkevesLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVV 1349
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAE-------------AEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA 752
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112421039 1350 RQEVVQYEDEPDLRAEVTAFTNSIDA----------ELRQIDKLHVELRR----LQHRRAELERQLEELER 1406
Cdd:COG1196 753 LEELPEPPDLEELERELERLEREIEAlgpvnllaieEYEELEERYDFLSEqredLEEARETLEEAIEEIDR 823
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1071-1657 |
1.34e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1071 LQEEHQREGTLREKQEEELSF--LQAKLRRLEKERAMAEGKITVKEVLKVEKD-AAVEREVNDLTRQYEDEAAKARSGQR 1147
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYqaLLKEKREYEGYELLKEKEALERQKEAIERQlASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1148 EKTELLRKIWALEEENAkVVVQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNR--GPQVE 1225
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQ-LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREieEERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1226 VKEVTKEVIKYTTDPET--------EQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKpqvqtREVVQEILQFQ 1297
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDlraeleevDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL-----QRLSEELADLN 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1298 EDPQTKKEveslRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEpdlraevtaftnsIDAEL 1377
Cdd:TIGR02169 427 AAIAGIEA----KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE-------------LSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1378 RQIDKLHVELRRLQHRRAELERQLEELERERQARRAAELEVQRLQQRLA-ALEQEEAKTGEKVTHTQKVVLQQDPQQTRE 1456
Cdd:TIGR02169 490 RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYAtAIEVAAGNRLNNVVVEDDAVAKEAIELLKR 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1457 HALLRAQLEEERHRRQLlEGELEPLRRKLA---ALEKAEIKEKV------VFSESVQVEKGDTEQEIQ------RLKKSL 1521
Cdd:TIGR02169 570 RKAGRATFLPLNKMRDE-RRDLSILSEDGVigfAVDLVEFDPKYepafkyVFGDTLVVEDIEAARRLMgkyrmvTLEGEL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1522 EEESQS--------------KRELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMA 1587
Cdd:TIGR02169 649 FEKSGAmtggsraprggilfSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1588 ATETRDLKNITtidsgTHLNSRLWSLEKELDDLKKMSKDKDLEIDELQRRLGSVAVKREQRENHLRRSIV 1657
Cdd:TIGR02169 729 EQEEEKLKERL-----EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
943-1491 |
1.89e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 943 ALEESFQQL---QQTLAEEQHKNQLLqEELGALQLRLQALEQETRDggQEYVVKevlRIEPDRAQEdEVLQLREELEALR 1019
Cdd:COG4913 229 ALVEHFDDLeraHEALEDAREQIELL-EPIRELAERYAAARERLAE--LEYLRA---ALRLWFAQR-RLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1020 RQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQndpQLEAEYRRLQEEHQREGTLREKQEEELSflQAKLRRL 1099
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRGNGGDRLE---QLEREIERLERELEERERRRARLEALLA--ALGLPLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1100 EKERAMAEGKITVKEVLKVEKD--AAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEEnakvvVQEKVREIVR 1177
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEelEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPAR-----LLALRDALAE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1178 PDPKAESE---VANLrLELVEQERKFRGAEEQL------------KSYQSELEALRNRGPQVEVkeVTKEVIKYTTDPET 1242
Cdd:COG4913 452 ALGLDEAElpfVGEL-IEVRPEEERWRGAIERVlggfaltllvppEHYAAALRWVNRLHLRGRL--VYERVRTGLPDPER 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1243 EQELQRLREEIMD----------KTRLIERCDLE----IYQLKQEIQAL--------KDTKPQVQTREVVQEILQFQEDP 1300
Cdd:COG4913 529 PRLDPDSLAGKLDfkphpfrawlEAELGRRFDYVcvdsPEELRRHPRAItragqvkgNGTRHEKDDRRRIRSRYVLGFDN 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1301 QTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVvqyeDEPDLRAEVTAftnsIDAELRQI 1380
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI----DVASAEREIAE----LEAELERL 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1381 DKLHVELRRLQHRRAELERQLEeleRERQARRAAELEVQRLQQRLAALEQEEAKTgeKVTHTQKVVLQQDPQQTREHALL 1460
Cdd:COG4913 681 DASSDDLAALEEQLEELEAELE---ELEEELDELKGEIGRLEKELEQAEEELDEL--QDRLEAAEDLARLELRALLEERF 755
|
570 580 590
....*....|....*....|....*....|...
gi 112421039 1461 RAQLEEERHR--RQLLEGELEPLRRKLAALEKA 1491
Cdd:COG4913 756 AAALGDAVERelRENLEERIDALRARLNRAEEE 788
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1411-1653 |
2.45e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 2.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1411 RRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQ-QDPQQTREHALLRAQLEEERhrrqlLEGELEPLRRKLAALE 1489
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSElEEEIEELQKELYALANEISR-----LEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1490 KaEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLE 1569
Cdd:TIGR02168 316 R-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1570 RQNLQLETRRLQSEIEMAATETRDLKNITTIDSGTHLNSRLWSLEKELDDLKKMSKDKDLEIDELQRRLGSVAVKREQRE 1649
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
....
gi 112421039 1650 NHLR 1653
Cdd:TIGR02168 475 QALD 478
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
903-1112 |
7.14e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.79 E-value: 7.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 903 RRQQLENEVKSAQEEIQTLKDQgpqESLVRKEVLKKVPDPALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQE 982
Cdd:COG3206 183 QLPELRKELEEAEAALEEFRQK---NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 983 TRDGGQEYVVKEVLRIEPDRAQED--------EVLQLREELEALRRQKGAREAEVLL-LQQRVAALAAEKSRVQEKVtER 1053
Cdd:COG3206 260 LQSPVIQQLRAQLAELEAELAELSarytpnhpDVIALRAQIAALRAQLQQEAQRILAsLEAELEALQAREASLQAQL-AQ 338
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 112421039 1054 EVVKLQNDPQLEAEYRRLQEEHQRegtlrekQEEELSFLQAKLRRLEKERAMAEGKITV 1112
Cdd:COG3206 339 LEARLAELPELEAELRRLEREVEV-------ARELYESLLQRLEEARLAEALTVGNVRV 390
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
646-1498 |
1.18e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 646 LDSKRQELEAMASELQAHKSLLGEVEQNLQVAK--QCSSSLASRFQEHcpdLERQEAEVHKLNQRFNNLSQQVERRAQSL 723
Cdd:PRK04863 302 LAAEQYRLVEMARELAELNEAESDLEQDYQAASdhLNLVQTALRQQEK---IERYQADLEELEERLEEQNEVVEEADEQQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 724 QSARAAYDEycsgynrvlqflaktpsyEPQETDSLgqmETKLKNQKNLLDELASReqevqkvyadSQQYQQAVKDYElEA 803
Cdd:PRK04863 379 EENEARAEA------------------AEEEVDEL---KSQLADYQQALDVQQTR----------AIQYQQAVQALE-RA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 804 EKLRSL--LDLENGRNSHVNKRARLQSpaakVKEEEAALAAKFTEVNAINRQrlqnLEFALNLLRQ---QPEAGVTHETL 878
Cdd:PRK04863 427 KQLCGLpdLTADNAEDWLEEFQAKEQE----ATEELLSLEQKLSVAQAAHSQ----FEQAYQLVRKiagEVSRSEAWDVA 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 879 QggklssgmeETWKIKKELEEEIERRQQLENEVKSAQeeiQTLKDQGPQESLVRKEVLKKVPDPALEESFQQLQQTLAEE 958
Cdd:PRK04863 499 R---------ELLRRLREQRHLAEQLQQLRMRLSELE---QRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEAR 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 959 QHKNQLLQEELGALQLRLQALEQETRdggqeyvvkevLRIEPDRAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAA 1038
Cdd:PRK04863 567 LESLSESVSEARERRMALRQQLEQLQ-----------ARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQ 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1039 LAaeksrVQEKVTEREVVKL-QNDPQLEAEYRRLQeehQREGtlrekqeEELSFLQAKLRRLekeramaeGKITVKEVLK 1117
Cdd:PRK04863 636 LL-----ERERELTVERDELaARKQALDEEIERLS---QPGG-------SEDPRLNALAERF--------GGVLLSEIYD 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1118 -VEKDAAVERE-----------VNDLTRqyedeAAKARSGQREKTELLRKI-----------WALEEENAKVVVQE---- 1170
Cdd:PRK04863 693 dVSLEDAPYFSalygparhaivVPDLSD-----AAEQLAGLEDCPEDLYLIegdpdsfddsvFSVEELEKAVVVKIadrq 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1171 ----KVREIVRPDPKA-ESEVANLRLELVEQERKFRGAEEQLKSYQSELEALR---NRGPQVEVkevtkevikyttDPET 1242
Cdd:PRK04863 768 wrysRFPEVPLFGRAArEKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSrfiGSHLAVAF------------EADP 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1243 EQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALkdtKPQVQTREVVQEILQFQEDPQTKKEVESLRIQL--SEEQKKQ 1320
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQA---KEGLSALNRLLPRLNLLADETLADRVEEIREQLdeAEEAKRF 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1321 VDLEGERASQ-------------EEKIKRKEEELAQGKERVVRQ------EVVQ------YEDEPDLRAEVTAFTNSIDA 1375
Cdd:PRK04863 913 VQQHGNALAQlepivsvlqsdpeQFEQLKQDYQQAQQTQRDAKQqafaltEVVQrrahfsYEDAAEMLAKNSDLNEKLRQ 992
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1376 ELRQIDKLHVELR-RLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAAL-------EQEEAKTGEKVTHtqkvvl 1447
Cdd:PRK04863 993 RLEQAEQERTRAReQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLgvpadsgAEERARARRDELH------ 1066
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|...
gi 112421039 1448 qqdpQQTREHALLRAQLEEErhrRQLLEGELEPLRRKLAALEK--AEIKEKVV 1498
Cdd:PRK04863 1067 ----ARLSANRSRRNQLEKQ---LTFCEAEMDNLTKKLRKLERdyHEMREQVV 1112
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
903-1104 |
1.80e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 903 RRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPDpaLEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQE 982
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA--LERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 983 TRDggQEYVVKEVLR--------------IEPD----------------RAQEDEVLQLREELEALRRQKGAREAEVLLL 1032
Cdd:COG4942 99 LEA--QKEELAELLRalyrlgrqpplallLSPEdfldavrrlqylkylaPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 112421039 1033 QQRVAALAAEKSRVQEKVTEREvvklqndpQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERA 1104
Cdd:COG4942 177 EALLAELEEERAALEALKAERQ--------KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
943-1111 |
2.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 943 ALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQETRDGGQE----YVVKEVLRIEPDRAQ----EDEVLQLREE 1014
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidvaSAEREIAELEAELERldasSDDLAALEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1015 LEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVkLQNDPQLEAEYRRLQEEHQREGTLREKQEEELSF-LQ 1093
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR-LEAAEDLARLELRALLEERFAAALGDAVERELREnLE 772
|
170
....*....|....*...
gi 112421039 1094 AKLRRLEKERAMAEGKIT 1111
Cdd:COG4913 773 ERIDALRARLNRAEEELE 790
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1192-1581 |
2.14e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1192 ELVEQERKFRGAEEQLKSYQSELEALRNRgpQVEVKEVTKEVIKYTTDPETEQELQRLREEIMDKTRLIERCDLEIYQLK 1271
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAE--LEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1272 QEIQALKDTKPQVQTREVVQEILQFQEDPQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQ 1351
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1352 EVVQYEDEPDLRAEVTAFTNSIDAELRQIDKLHVEL------------RRLQHRRAELERQLEELERERQARRAAELEVQ 1419
Cdd:COG4717 240 ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgllaLLFLLLAREKASLGKEAEELQALPALEELEEE 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1420 RLQQRLAALEQEEAKTGEKVTHTQKVV--LQQDPQQTREHALLRAQLEEERHRRQLLE----GELEPLRRKLAALEKA-E 1492
Cdd:COG4717 320 ELEELLAALGLPPDLSPEELLELLDRIeeLQELLREAEELEEELQLEELEQEIAALLAeagvEDEEELRAALEQAEEYqE 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1493 IKEKV-------------VFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEfynskSSKELDFL 1559
Cdd:COG4717 400 LKEELeeleeqleellgeLEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE-----EDGELAEL 474
|
410 420
....*....|....*....|..
gi 112421039 1560 REENHKLQLERQNLQLETRRLQ 1581
Cdd:COG4717 475 LQELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
903-1169 |
2.18e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 903 RRQQLENEVKSAQEEIQTLKDQgpQESLVRKEVLKKVPDPALEESFQQLQQTLAEEQH-----KNQLLQEELGALQLRLQ 977
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEED--LSSLEQEIENVKSELKELEARIEELEEDLHKLEEalndlEARLSHSRIPEIQAELS 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 978 ALEQETRDggQEYVVKEVLRIEPDRAQEDEVLQ-LREELEALRR----QKGAREAEVLLLQQRVAALAAE--KSRVQEKV 1050
Cdd:TIGR02169 802 KLEEEVSR--IEARLREIEQKLNRLTLEKEYLEkEIQELQEQRIdlkeQIKSIEKEIENLNGKKEELEEEleELEAALRD 879
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1051 TEREVVKLQND-PQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEK-----ERAMAEGKITVKEVLKVEKDAA- 1123
Cdd:TIGR02169 880 LESRLGDLKKErDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEelseiEDPKGEDEEIPEEELSLEDVQAe 959
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 112421039 1124 ---VEREVNDL-------TRQYEDEAA-------KARSGQREKTELLRKIWALEEENAKVVVQ 1169
Cdd:TIGR02169 960 lqrVEEEIRALepvnmlaIQEYEEVLKrldelkeKRAKLEEERKAILERIEEYEKKKREVFME 1022
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1012-1203 |
2.19e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1012 REELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQND-----PQLEAEYRRLQEEHQR----EGTLR 1082
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWdeidvASAEREIAELEAELERldasSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1083 EkQEEELSFLQAKLRRLEKERAMAEGKItvkevlkvekdAAVEREVNDLTRqyEDEAAKARSGQREKTELLRKIWALEEE 1162
Cdd:COG4913 689 A-LEEQLEELEAELEELEEELDELKGEI-----------GRLEKELEQAEE--ELDELQDRLEAAEDLARLELRALLEER 754
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 112421039 1163 NAKVVVQEKVREIVRpdpKAESEVANLRLELVEQERKFRGA 1203
Cdd:COG4913 755 FAAALGDAVERELRE---NLEERIDALRARLNRAEEELERA 792
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1060-1492 |
3.16e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 3.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1060 NDPQLEAEYRRLQEEHQREGTLREKQEEeLSFLQAKLRRLEKERAMAEGKITVKEVLK-----VEKDAAVEREVNDLTRQ 1134
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLLqllplYQELEALEAELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1135 YEdeaaKARSGQREKTELLRKIWALEEENAKVVvQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSEL 1214
Cdd:COG4717 148 LE----ELEERLEELRELEEELEELEAELAELQ-EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1215 EALRNRGPQVEVKEVTKEVIKYTTDPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEIL 1294
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1295 QFQEdPQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEpDLRAEVTAFTNSID 1374
Cdd:COG4717 303 EAEE-LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE-ELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1375 A----ELRQIDKLHVELRRLQHRRAELERQLEELERERQARrAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVvlQQD 1450
Cdd:COG4717 381 VedeeELRAALEQAEEYQELKEELEELEEQLEELLGELEEL-LEALDEEELEEELEELEEELEELEEELEELREE--LAE 457
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 112421039 1451 PQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAE 1492
Cdd:COG4717 458 LEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLAL 499
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
904-1431 |
4.51e-05 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 48.21 E-value: 4.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 904 RQQLENEVKSAQEEIQTL-KDQGPQESLVRKEVLKKVPDPA--LEESFQQLQ-------QTLAEEQHKNQLLQEELGALQ 973
Cdd:pfam07111 131 RKNLEEGSQRELEEIQRLhQEQLSSLTQAHEEALSSLTSKAegLEKSLNSLEtkrageaKQLAEAQKEAELLRKQLSKTQ 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 974 LRLQAlEQETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEr 1053
Cdd:pfam07111 211 EELEA-QVTLVESLRKYVGEQVPPEVHSQTWELERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTR- 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1054 evvKLQNDPQLEAEYRRlqeehQREGTLREKQEEELSFL-QAKLRRLEKERAMAEGKITVKEV-----LKVEKDAAVERE 1127
Cdd:pfam07111 289 ---KIQPSDSLEPEFPK-----KCRSLLNRWREKVFALMvQLKAQDLEHRDSVKQLRGQVAELqeqvtSQSQEQAILQRA 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1128 VNDLTRQYEDEAAKARSGQRE--KTELLRKIW----ALEEENAKVVV------QEKVREIVRPDPKAESEVANLRLELVE 1195
Cdd:pfam07111 361 LQDKAAEVEVERMSAKGLQMElsRAQEARRRQqqqtASAEEQLKFVVnamsstQIWLETTMTRVEQAVARIPSLSNRLSY 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1196 QERKFrgaeEQLKSYQSELEALrnrgPQVEVKEVTKEVIKYTTDPETEQELQRLREEimdKTRLIERCDLEIYQLKQEIQ 1275
Cdd:pfam07111 441 AVRKV----HTIKGLMARKVAL----AQLRQESCPPPPPAPPVDADLSLELEQLREE---RNRLDAELQLSAHLIQQEVG 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1276 ALKDT--KPQVQTREVVQEILQfqEDPQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRqev 1353
Cdd:pfam07111 510 RAREQgeAERQQLSEVAQQLEQ--ELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQEIYGQALQEKVA--- 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1354 vqyEDEPDLRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEE----------LERERQARRAAELEVQRlQQ 1423
Cdd:pfam07111 585 ---EVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQElrrlqdearkEEGQRLARRVQELERDK-NL 660
|
....*...
gi 112421039 1424 RLAALEQE 1431
Cdd:pfam07111 661 MLATLQQE 668
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1054-1599 |
9.26e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 9.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1054 EVVKLQND-PQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEvLKVEKDAAVEREVNDLT 1132
Cdd:TIGR04523 146 EIKKKEKElEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISELK 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1133 RQYEDEAAKARSGQREKTELLRKIWAleeenakvvVQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQS 1212
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISN---------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKS 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1213 ELEALRNRGPQVEVKEVtKEVIKyttdpETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDT--KPQVQTREVV 1290
Cdd:TIGR04523 296 EISDLNNQKEQDWNKEL-KSELK-----NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEnsEKQRELEEKQ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1291 QEILQFQEDPQTKK-EVESLRIQLSE-EQK--KQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEV 1366
Cdd:TIGR04523 370 NEIEKLKKENQSYKqEIKNLESQINDlESKiqNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQD 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1367 TAFTNSIDAELRQIDKLHVELRRLqhrraelerqleelererqarraaELEVQRLQQRLAALEQE-EAKTGE--KVTHTQ 1443
Cdd:TIGR04523 450 SVKELIIKNLDNTRESLETQLKVL------------------------SRSINKIKQNLEQKQKElKSKEKElkKLNEEK 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1444 KVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALE---KAEIKEKVVFSESVQVEKgdTEQEIQRLKKS 1520
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDfelKKENLEKEIDEKNKEIEE--LKQTQKSLKKK 583
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112421039 1521 LEEESQSKRELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITT 1599
Cdd:TIGR04523 584 QEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWP 662
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1373-1562 |
1.13e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1373 IDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAAEL--EVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQD 1450
Cdd:COG4913 257 IRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELraELARLEAELERLEARLDALREELDELEAQIRGNG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1451 PQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRE 1530
Cdd:COG4913 337 GDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD 416
|
170 180 190
....*....|....*....|....*....|..
gi 112421039 1531 LDSEVTRLEAKLSELEFYNSKSSKELDFLREE 1562
Cdd:COG4913 417 LRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1412-1638 |
1.42e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1412 RAAELEVQRLQQRLAALE------QEEAKTGEKVTHTQKVVLQQDPQQ-TREHALLRAQLEEERHRRQLLEGELEPLRRK 1484
Cdd:COG4913 238 ERAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAALRLWFaQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1485 LAALEKAEikekvvfsESVQVEK-GDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKSSKELDFLREEn 1563
Cdd:COG4913 318 LDALREEL--------DELEAQIrGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE- 388
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 112421039 1564 hkLQLERQNLQLETRRLQSEIEMAATETRDLKNittidsgthlnsRLWSLEKELDDLKKMSKDKDLEIDELQRRL 1638
Cdd:COG4913 389 --AAALLEALEEELEALEEALAEAEAALRDLRR------------ELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
958-1546 |
1.56e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 958 EQHKNQLLQEELGALQLRLQALEQETRDggqeyVVKEVLRIEPDRAQEDEVLQLREELEALRRQKgareaevlllQQRVA 1037
Cdd:PRK02224 190 DQLKAQIEEKEEKDLHERLNGLESELAE-----LDEEIERYEEQREQARETRDEADEVLEEHEER----------REELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1038 ALAAEKSRVQEKVTEREVVKlqndpqlEAEYRRLQEEHQREGTLREKQEEELSflqaklrRLEKERAMAEGKITVKEVLK 1117
Cdd:PRK02224 255 TLEAEIEDLRETIAETERER-------EELAEEVRDLRERLEELEEERDDLLA-------EAGLDDADAEAVEARREELE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1118 VEKDAAVER------EVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEEnakvvvQEKVREIVRpdpKAESEVANLRL 1191
Cdd:PRK02224 321 DRDEELRDRleecrvAAQAHNEEAESLREDADDLEERAEELREEAAELESE------LEEAREAVE---DRREEIEELEE 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1192 ELVEQERKFRGAEEQLKSYQSELEALRnrgpqvEVKEVTKEVIKyttdpETEQELQRLREEIMDKTRL------------ 1259
Cdd:PRK02224 392 EIEELRERFGDAPVDLGNAEDFLEELR------EERDELREREA-----ELEATLRTARERVEEAEALleagkcpecgqp 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1260 ---------IERCDLEIYQLKQEIQALKDTKPQVQTREVVQEILQFQEDP-QTKKEVESLRIQLSEEQKKQVDLEGERAS 1329
Cdd:PRK02224 461 vegsphvetIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRiERLEERREDLEELIAERRETIEEKRERAE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1330 QEEKIKRKEEELAQGKervvRQEVVQYEDEPDLRAEVTAftnSIDAELRQIDKLHVELRRLQHRRAelerqleelererq 1409
Cdd:PRK02224 541 ELRERAAELEAEAEEK----REAAAEAEEEAEEAREEVA---ELNSKLAELKERIESLERIRTLLA-------------- 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1410 ARRAAELEVQRLQQRLAALEQEEaktgekvthtqkvvlqqdpQQTREHallraqLEEERHRRQLLEGELEPLRRKLAALE 1489
Cdd:PRK02224 600 AIADAEDEIERLREKREALAELN-------------------DERRER------LAEKRERKRELEAEFDEARIEEARED 654
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 112421039 1490 KAEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELE 1546
Cdd:PRK02224 655 KERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALE 711
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1202-1648 |
1.83e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1202 GAEEQLKSYQSELEALR-NRGPQVEVKEVTKEVIkyTTDPETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALkdt 1280
Cdd:PRK02224 210 GLESELAELDEEIERYEeQREQARETRDEADEVL--EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL--- 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1281 kpqvqtREVVQEILQFQEDPQTKKEVESLRIQLSEEQKKqvDLEGERASqeekikrkeeelaqgkervVRQEVVQyedep 1360
Cdd:PRK02224 285 ------RERLEELEEERDDLLAEAGLDDADAEAVEARRE--ELEDRDEE-------------------LRDRLEE----- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1361 dLRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEelererqarrAAELEVQRLQQRLAALEQEEAKTGEKVT 1440
Cdd:PRK02224 333 -CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE----------EAREAVEDRREEIEELEEEIEELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1441 HTQkvvlQQDPQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEK-------AEIKEKVVFSESVQVeKGDTEQE 1513
Cdd:PRK02224 402 DAP----VDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcPECGQPVEGSPHVET-IEEDRER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1514 IQRLKKSLEEESQSKRELDSEVTRLE-AKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQ-SEIEMAATET 1591
Cdd:PRK02224 477 VEELEAELEDLEEEVEEVEERLERAEdLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERaAELEAEAEEK 556
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 112421039 1592 RDLKNITTIDSGTH------LNSRLWSLEKELDDLKKMSKDKDlEIDELQRRLGSVAVKREQR 1648
Cdd:PRK02224 557 REAAAEAEEEAEEAreevaeLNSKLAELKERIESLERIRTLLA-AIADAEDEIERLREKREAL 618
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
904-1279 |
2.11e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 904 RQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPDPA--LEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALEQ 981
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAeeKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 982 ETRDGGQEYVVKEVlriepdraqEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQND 1061
Cdd:COG4717 124 LLQLLPLYQELEAL---------EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1062 PQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKE--------------------------- 1114
Cdd:COG4717 195 QDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaallallglggsllslilt 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1115 ------------VLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKVVVQ--EKVREIVRPDP 1180
Cdd:COG4717 275 iagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLEllDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1181 KAESEVANLRLELVEQERK-------------FRGAEEQLKSYQSELEALRNRGPQVE-VKEVTKEVIKYTTDPETEQEL 1246
Cdd:COG4717 355 EAEELEEELQLEELEQEIAallaeagvedeeeLRAALEQAEEYQELKEELEELEEQLEeLLGELEELLEALDEEELEEEL 434
|
410 420 430
....*....|....*....|....*....|...
gi 112421039 1247 QRLREEIMDKTRLIERCDLEIYQLKQEIQALKD 1279
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
581-1220 |
2.49e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 2.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 581 APLLKTRVEDTNQKYERLVWLLEAAQEKVDVAN----RLENSLQRGRELLASYENRLIQ-DDTMPESGHV----LDSKRQ 651
Cdd:pfam12128 275 ASRQEERQETSAELNQLLRTLDDQWKEKRDELNgelsAADAAVAKDRSELEALEDQHGAfLDADIETAAAdqeqLPSWQS 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 652 ELEAMASELQAHKSLLGEVEQNLQVAKQCSSslasrfqehcpdlERQEAEVHKLNQRfnnLSQQVERRAQSLQSARAAYD 731
Cdd:pfam12128 355 ELENLEERLKALTGKHQDVTAKYNRRRSKIK-------------EQNNRDIAGIKDK---LAKIREARDRQLAVAEDDLQ 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 732 EYCSGYNRVLQfLAKTPSYEPQEtdslgQMETKLKNQKNLLDELASREQEVQkvyadsqqyQQAVKDYELeaEKLRSLLD 811
Cdd:pfam12128 419 ALESELREQLE-AGKLEFNEEEY-----RLKSRLGELKLRLNQATATPELLL---------QLENFDERI--ERAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 812 LENGrnshvnKRARLQSpaakvkeEEAALAAKFTEVN-AINR--QRLQNLEFALNLLRQQ--PEAGVTHETLQggKLSSG 886
Cdd:pfam12128 482 AANA------EVERLQS-------ELRQARKRRDQASeALRQasRRLEERQSALDELELQlfPQAGTLLHFLR--KEAPD 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 887 MEETWKIKKELEEEIerRQQLENEVKSAQEEiQTLKDQGPQESLVRKEVLKKVP-DPALEESFQQLQQTLAEEQHKNQLL 965
Cdd:pfam12128 547 WEQSIGKVISPELLH--RTDLDPEVWDGSVG-GELNLYGVKLDLKRIDVPEWAAsEEELRERLDKAEEALQSAREKQAAA 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 966 QEELGALQLRLQALEQETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQKGAR------EAEVLLLQQRvAAL 1039
Cdd:pfam12128 624 EEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERlnsleaQLKQLDKKHQ-AWL 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1040 AAEKSRVQEKVTEREvvklqndpqleaEYRRLQEEHQ--REGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEvlk 1117
Cdd:pfam12128 703 EEQKEQKREARTEKQ------------AYWQVVEGALdaQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDP--- 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1118 vEKDAAVEREVNDLTRQYEDeAAKARSGQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQE 1197
Cdd:pfam12128 768 -DVIAKLKREIRTLERKIER-IAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE 845
|
650 660
....*....|....*....|...
gi 112421039 1198 RKFRGAEEQLKSYQSELEALRNR 1220
Cdd:pfam12128 846 MERKASEKQQVRLSENLRGLRCE 868
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1474-1638 |
2.50e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1474 LEGELEPLRRKLAALEKAEiKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKSS 1553
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLN-QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1554 KELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITtidsgTHLNSRLWSLEKELDDLKKMSKDKDLEIDE 1633
Cdd:TIGR04523 468 TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV-----KDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
....*
gi 112421039 1634 LQRRL 1638
Cdd:TIGR04523 543 LEDEL 547
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1295-1546 |
3.08e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1295 QFQEDPQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEvvqyedepdlraevtaftnsid 1374
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE---------------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1375 aelRQIDKLHVELRRLQHRRAELErQLEELERERQARRAAELEVQRLQQRLAAL-EQEEAKTGEKVTHTQKVVLQQDPQQ 1453
Cdd:COG4942 76 ---QELAALEAELAELEKEIAELR-AELEAQKEELAELLRALYRLGRQPPLALLlSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1454 TREhalLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEikekvvfsESVQVEKGDTEQEIQRLKKSLEEESQSKRELDS 1533
Cdd:COG4942 152 AEE---LRADLAELAALRAELEAERAELEALLAELEEER--------AALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
250
....*....|...
gi 112421039 1534 EVTRLEAKLSELE 1546
Cdd:COG4942 221 EAEELEALIARLE 233
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1087-1635 |
3.22e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 3.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1087 EELSFLQAKLRRLEKERAMAEGKIT--VKEVLKVEKdaaverEVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENA 1164
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDkfLTEIKKKEK------ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1165 KVVVQEKVREIVRPDPKAESEVAN-LRLELVEQERKFRGAEEQLKSYQSELEALRNrgpqveVKEVTKEVIKYTTD--PE 1241
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKsLESQISELKKQNNQLKDNIEKKQQEINEKTT------EISNTQTQLNQLKDeqNK 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1242 TEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEIlqfqedPQTKKEVESLRIQLSEEQKKQV 1321
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSEL------KNQEKKLEEIQNQISQNNKIIS 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1322 DLEgERASQEEKIKRKEEELAQGKERVVRQEVVQYEDepdLRAEVTAFTNSIDAELRQIDKLHvelRRLQHRRAELERQL 1401
Cdd:TIGR04523 339 QLN-EQISQLKKELTNSESENSEKQRELEEKQNEIEK---LKKENQSYKQEIKNLESQINDLE---SKIQNQEKLNQQKD 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1402 EELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVlqQDPQQTREHalLRAQLEEerhrrqlLEGELEPL 1481
Cdd:TIGR04523 412 EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELII--KNLDNTRES--LETQLKV-------LSRSINKI 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1482 RRKLAALEKaEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELE---------FYNSKS 1552
Cdd:TIGR04523 481 KQNLEQKQK-ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEdelnkddfeLKKENL 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1553 SKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIdsgthLNSRLWSLEKELDDLKKMSKDKDLEID 1632
Cdd:TIGR04523 560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE-----KEKKISSLEKELEKAKKENEKLSSIIK 634
|
...
gi 112421039 1633 ELQ 1635
Cdd:TIGR04523 635 NIK 637
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
646-1490 |
3.47e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 646 LDSKRQELEAMASELQAHKSLLGEVEQNLQVAkqcSSSL-----ASRFQEhcpDLERQEAEVHKLNQRFNNLSQQVERRA 720
Cdd:COG3096 301 LAEEQYRLVEMARELEELSARESDLEQDYQAA---SDHLnlvqtALRQQE---KIERYQEDLEELTERLEEQEEVVEEAA 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 721 QSLQSARAAYDEycsgynrvlqflaktpsyEPQETDSLGqmeTKLKNQKNLLDELASReqevqkvyadSQQYQQAVKDYE 800
Cdd:COG3096 375 EQLAEAEARLEA------------------AEEEVDSLK---SQLADYQQALDVQQTR----------AIQYQQAVQALE 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 801 lEAEKLRSL--LDLENGRNSHVNKRARLQS--------------PAAKVKEEEAALAAKFTEVNAINR------------ 852
Cdd:COG3096 424 -KARALCGLpdLTPENAEDYLAAFRAKEQQateevleleqklsvADAARRQFEKAYELVCKIAGEVERsqawqtarellr 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 853 ---------QRLQNLEFALN----LLRQQPEAGVTHETL---QGGKLSSGMEetwkIKKELEEEIERRQQLENEVKSAQE 916
Cdd:COG3096 503 ryrsqqalaQRLQQLRAQLAeleqRLRQQQNAERLLEEFcqrIGQQLDAAEE----LEELLAELEAQLEELEEQAAEAVE 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 917 EIQTLKDQGPQESLVRKEVLKKVP-----DPALEESFQQLQQTLAEEQ----HKNQLLQEELGALQLRLQALEQetrdgg 987
Cdd:COG3096 579 QRSELRQQLEQLRARIKELAARAPawlaaQDALERLREQSGEALADSQevtaAMQQLLEREREATVERDELAAR------ 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 988 QEYVVKEVLRI-EPDRAQEDEVLQLREELEALRRQKG--------AREAEVLLLQQRVAALAAEKSRVQEKVTERE---- 1054
Cdd:COG3096 653 KQALESQIERLsQPGGAEDPRLLALAERLGGVLLSEIyddvtledAPYFSALYGPARHAIVVPDLSAVKEQLAGLEdcpe 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1055 -VVKLQNDPQLEAEyrrlqeehqregTLREKQEEELSFL------QAKLRRLEKE----RAMAEGKItvkEVLKVEKDAA 1123
Cdd:COG3096 733 dLYLIEGDPDSFDD------------SVFDAEELEDAVVvklsdrQWRYSRFPEVplfgRAAREKRL---EELRAERDEL 797
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1124 VERevndltrqyedeAAKARSGQREKTELLRKIWALEEENAKVVVQekvreivrPDPkaESEVANLRLELVEQERKFRGA 1203
Cdd:COG3096 798 AEQ------------YAKASFDVQKLQRLHQAFSQFVGGHLAVAFA--------PDP--EAELAALRQRRSELERELAQH 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1204 EEQLKSYQSELEALRnrgpqvevkevtkevikyttdpETEQELQRLREEIM--DKTRLIERCDLEIYQLKQEIQALKDTK 1281
Cdd:COG3096 856 RAQEQQLRQQLDQLK----------------------EQLQLLNKLLPQANllADETLADRLEELREELDAAQEAQAFIQ 913
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1282 PQVQTREVVQEILQ-FQEDPQtkkEVESLRIQLSEEQKKQvdlegERASQEEKIKrkeeelaqgKERVVRQEVVQYEDEP 1360
Cdd:COG3096 914 QHGKALAQLEPLVAvLQSDPE---QFEQLQADYLQAKEQQ-----RRLKQQIFAL---------SEVVQRRPHFSYEDAV 976
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1361 DLRAEVTAFTNSIDAELRQIDKLHVELR-RLQHRRAELERQLEELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKV 1439
Cdd:COG3096 977 GLLGENSDLNEKLRARLEQAEEARREAReQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELGVQADAEAEER 1056
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 112421039 1440 THTQKVVLQqdpQQTREHALLRAQLEEErhrRQLLEGELEPLRRKLAALEK 1490
Cdd:COG3096 1057 ARIRRDELH---EELSQNRSRRSQLEKQ---LTRCEAEMDSLQKRLRKAER 1101
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1486-1636 |
3.74e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.23 E-value: 3.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1486 AALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHK 1565
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERR 459
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 112421039 1566 LQLERQnlqlETRRLQSEIEMaatetrdlknittidsgthlnsrlwsLEKELDDLKKMSKDKDLEIDELQR 1636
Cdd:COG2433 460 EIRKDR----EISRLDREIER--------------------------LERELEEERERIEELKRKLERLKE 500
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
903-1330 |
4.09e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 903 RRQQLENEVKSAQEEIQTLKDQGPQESLVRKEV-LKKVPDPA-------------------------LEESFQQLQQTLA 956
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLqLEKVTTEAkikkleedillledqnsklskerklLEERISEFTSNLA 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 957 EEQHKNQLLQEELGALQLRLQALEQETR--DGGQEYVVKEVLRIEPDRAQ-EDEVLQLREELEALRRQKGAREAEVLLLQ 1033
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLKkeEKGRQELEKAKRKLEGESTDlQEQIAELQAQIAELRAQLAKKEEELQAAL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1034 QRVAALAAEKSRVQEKVTERE--VVKLQNDPQLEAEYRRLQEEHQREgtlrekQEEELSFLQAKLR------------RL 1099
Cdd:pfam01576 250 ARLEEETAQKNNALKKIRELEaqISELQEDLESERAARNKAEKQRRD------LGEELEALKTELEdtldttaaqqelRS 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1100 EKERAMAEGKITVKEVLKVEkDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKVVVQEKVREIVRPD 1179
Cdd:pfam01576 324 KREQEVTELKKALEEETRSH-EAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQD 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1180 -----PKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVK--EVTKEVIKYTTDPETEQEL------ 1246
Cdd:pfam01576 403 sehkrKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKniKLSKDVSSLESQLQDTQELlqeetr 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1247 ------QRLREEIMDKTRLIErcdleiyQLKQEIQALKDTKPQVQTrevvqeiLQFQ-EDPQTKKEVESLRIQLSEEQKK 1319
Cdd:pfam01576 483 qklnlsTRLRQLEDERNSLQE-------QLEEEEEAKRNVERQLST-------LQAQlSDMKKKLEEDAGTLEALEEGKK 548
|
490
....*....|.
gi 112421039 1320 QVDLEGERASQ 1330
Cdd:pfam01576 549 RLQRELEALTQ 559
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1364-1610 |
6.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1364 AEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARR----AAELEVQRLQQRLAALEQEEAKTGEKV 1439
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALErriaALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1440 THTQK-------------VVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEIKEkvvfsesVQVE 1506
Cdd:COG4942 93 AELRAeleaqkeelaellRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-------LAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1507 KGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEfynsksskeldflrEENHKLQLERQNLQLETRRLQSEIEM 1586
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLE--------------KELAELAAELAELQQEAEELEALIAR 231
|
250 260
....*....|....*....|....
gi 112421039 1587 AATETRDLKNITTIDSGTHLNSRL 1610
Cdd:COG4942 232 LEAEAAAAAERTPAAGFAALKGKL 255
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1364-1654 |
6.99e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1364 AEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERErqarRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQ 1443
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE----REKAERYQALLKEKREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1444 KVvlqqdpQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEE 1523
Cdd:TIGR02169 239 KE------AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1524 ESQSKRELDSEVTRLEAKLSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNittidsg 1603
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD------- 385
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 112421039 1604 thlnsRLWSLEKELDDLKKMSKDKDLEIDELQRRLGSVAVKREQRENHLRR 1654
Cdd:TIGR02169 386 -----ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1249-1490 |
7.55e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 7.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1249 LREEIMDKTRLIERCDleiyQLKQEIQALKDTKPQVQTrevvqeilqfqedpqTKKEVESLRiQLSEEQKKQVDLEGERA 1328
Cdd:COG4913 213 VREYMLEEPDTFEAAD----ALVEHFDDLERAHEALED---------------AREQIELLE-PIRELAERYAAARERLA 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1329 SQEEKIKRKEEELAQGKERVVRQEVVQYEDEPD-LRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERE 1407
Cdd:COG4913 273 ELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLER 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1408 RQARRAAELevQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAA 1487
Cdd:COG4913 353 ELEERERRR--ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
...
gi 112421039 1488 LEK 1490
Cdd:COG4913 431 LER 433
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1655-1683 |
1.78e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 37.46 E-value: 1.78e-03
10 20
....*....|....*....|....*....
gi 112421039 1655 SIVVIDPDTGRELSPEEAHRAGLIDWKMF 1683
Cdd:smart00250 10 IGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1341-1655 |
1.82e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1341 LAQGKERVVRQEVVQYEDEPDLRAEVTAFTNSIDAELRQIDKLHVELRRLQHR-RAELERQLEELERERQARRAAELEVQ 1419
Cdd:pfam02463 178 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELLRDEQEEIESSK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1420 RLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEIKEKVVF 1499
Cdd:pfam02463 258 QEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEI 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1500 SESVQVEKgdtEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLS-ELEFYNSKSSKELDFLREENHKLQLERQNLQLETR 1578
Cdd:pfam02463 338 EELEKELK---ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKkKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA 414
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112421039 1579 RLQSEIEMAATETRDLKNITTIDSGTHLNSRLWSLEKELDDLKKMSKDKDLEIDELQRRLGSVAVKREQRENHLRRS 1655
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLS 491
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1132-1571 |
1.98e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1132 TRQYEDEAAKARSgqrEKTELLRKIWALEEENAKVVVQEKVREIVRPDPKA--ESEVANLRLELVEQerkfRGAEEQLKS 1209
Cdd:TIGR00618 175 LDQYTQLALMEFA---KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQvlEKELKHLREALQQT----QQSHAYLTQ 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1210 YQSELEALRNRgpQVEVKEVTKEVIKYTTDpetEQELQRLREEImDKTRLIERCDLEIYQLKQEIQALKDTKPQVQTREV 1289
Cdd:TIGR00618 248 KREAQEEQLKK--QQLLKQLRARIEELRAQ---EAVLEETQERI-NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMR 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1290 VQEILQFQEDPQTKKEVESLRIQLSEEQKKQVDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTAF 1369
Cdd:TIGR00618 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1370 TNSIDAELRQIDKLHVELRRLQHRRAELERQLEELERERQARRAA-----------ELEVQRLQQRLAALEQEEAKTG-- 1436
Cdd:TIGR00618 402 LDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAitctaqcekleKIHLQESAQSLKEREQQLQTKEqi 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1437 -EKVTHTQKVVLQQDPQQTREHALLRAQLEEERHRRQLLeGELEPLRRKLAALEKAEIKEKVVFsESVQVEKGDTEQEIQ 1515
Cdd:TIGR00618 482 hLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI-DNPGPLTRRMQRGEQTYAQLETSE-EDVYHQLTSERKQRA 559
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 112421039 1516 RLKKSLEEESQSKRELDSEVTRLEAKLS-------ELEFYNSKSSKELDFLREENHKLQLERQ 1571
Cdd:TIGR00618 560 SLKEQMQEIQQSFSILTQCDNRSKEDIPnlqnitvRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
646-1328 |
2.15e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 646 LDSKRQELEA--MASELQAHKSLLGEVEQNLQVAKQCSSSLASRFQEHCPDLERQEAEVHKLNQRFNNLSQ----QVERR 719
Cdd:TIGR02169 216 LLKEKREYEGyeLLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlRVKEK 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 720 AQSLQSARAAYDEYCSGYNRVLQFLAKT--------PSYEPQETDSLGQMETKLKNQKNLLDELASRE-------QEVQK 784
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKERELEDAEERlakleaeiDKLLAEIEELEREIEEERKRRDKLTEEYAELKeeledlrAELEE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 785 VYADSQQYQQAVKDYELEAEKLRslldleNGRNSHVNKRARLQSPAAKVKEEEAALAAKFTEVnainRQRLQNLEFALNL 864
Cdd:TIGR02169 376 VDKEFAETRDELKDYREKLEKLK------REINELKRELDRLQEELQRLSEELADLNAAIAGI----EAKINELEEEKED 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 865 LRQQPEAgvthetlQGGKLSSGMEETWKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQgpQESLVRKEVLKKVPDPAL 944
Cdd:TIGR02169 446 KALEIKK-------QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ--ARASEERVRGGRAVEEVL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 945 EESFQQLQQTLAE-----EQHKN-------------------------QLLQEELG--ALQLRLQALEQETRDGGQ---- 988
Cdd:TIGR02169 517 KASIQGVHGTVAQlgsvgERYATaievaagnrlnnvvveddavakeaiELLKRRKAgrATFLPLNKMRDERRDLSIlsed 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 989 ----------------EYVVKEVLR---------------------------IEPD-----------------RAQEDEV 1008
Cdd:TIGR02169 597 gvigfavdlvefdpkyEPAFKYVFGdtlvvedieaarrlmgkyrmvtlegelFEKSgamtggsraprggilfsRSEPAEL 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1009 LQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKVTErevvklqndpqLEAEYRRLQEEHQREGTLREKQEEE 1088
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE-----------IEKEIEQLEQEEEKLKERLEELEED 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1089 LSFLQAKLRRLEKERAMAEGKITVKEvlkvEKDAAVEREVNDLtrqyedEAAKARSGQREKTELLRKIwalEEENAKVVv 1168
Cdd:TIGR02169 746 LSSLEQEIENVKSELKELEARIEELE----EDLHKLEEALNDL------EARLSHSRIPEIQAELSKL---EEEVSRIE- 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1169 qEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNRgpqvevKEVTKEVIKyttdpETEQELQR 1248
Cdd:TIGR02169 812 -ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK------KEELEEELE-----ELEAALRD 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1249 LREEIMDKTRLIERCDLEIYQLKQEIQALK----DTKPQVQTREVVQEILQFQE---DPQTKKEVESLRIQLSEEQKKQV 1321
Cdd:TIGR02169 880 LESRLGDLKKERDELEAQLRELERKIEELEaqieKKRKRLSELKAKLEALEEELseiEDPKGEDEEIPEEELSLEDVQAE 959
|
....*..
gi 112421039 1322 DLEGERA 1328
Cdd:TIGR02169 960 LQRVEEE 966
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
905-1106 |
2.15e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 905 QQLENEVKSAQEEI-QTLKD-----QGPQESLVRKEVLKKVPD--PALeesFQQLQQTLAEEQHKNQLLQEELGAlqlrl 976
Cdd:PRK10929 33 EQAKAAKTPAQAEIvEALQSalnwlEERKGSLERAKQYQQVIDnfPKL---SAELRQQLNNERDEPRSVPPNMST----- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 977 QALEQETRDGGQEYVVKE-VLRIEPDRAQE--DEVLQL-------REEL-EALRRQKGAREAEVLLLQQRVAALAAEKSR 1045
Cdd:PRK10929 105 DALEQEILQVSSQLLEKSrQAQQEQDRAREisDSLSQLpqqqteaRRQLnEIERRLQTLGTPNTPLAQAQLTALQAESAA 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 112421039 1046 VQEKVTEREVVklqndpQLEAEYRrlQEEHQREGTLREKQEEEL-SFLQA------KLRRLEKERAMA 1106
Cdd:PRK10929 185 LKALVDELELA------QLSANNR--QELARLRSELAKKRSQQLdAYLQAlrnqlnSQRQREAERALE 244
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1148-1546 |
2.31e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1148 EKTELLRKIWALEEENAKVVVQEKVReiVRPDPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEALRNrgpqvEVK 1227
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVR--YNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQ-----EKE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1228 EVTKEVIKYTTDPETEQ----ELQRLREEIMDKTRLIERCDLEIYQLKQEIQalKDTKPQVQTREVVQEILQFQEDPqtk 1303
Cdd:pfam17380 307 EKAREVERRRKLEEAEKarqaEMDRQAAIYAEQERMAMERERELERIRQEER--KRELERIRQEEIAMEISRMRELE--- 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1304 keveslRIQLSEEQKKqvdlegERASQEEKIKRKEEELAQGKERVVRQEVVQYEDepdLRAEvtaftnsiDAELRQIdkl 1383
Cdd:pfam17380 382 ------RLQMERQQKN------ERVRQELEAARKVKILEEERQRKIQQQKVEMEQ---IRAE--------QEEARQR--- 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1384 hvELRRLQHRRAElerqleelererQARRAAELEVQRlQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQ 1463
Cdd:pfam17380 436 --EVRRLEEERAR------------EMERVRLEEQER-QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1464 LE-------EERHRRQLLEGELEPLRRKLAALEKAEIKEKvvfSESVQVEKGDTEQEIQRLKKSLEEES-----QSKREL 1531
Cdd:pfam17380 501 LEerkqamiEEERKRKLLEKEMEERQKAIYEEERRREAEE---ERRKQQEMEERRRIQEQMRKATEERSrleamEREREM 577
|
410
....*....|....*
gi 112421039 1532 DSEVTRLEAKLSELE 1546
Cdd:pfam17380 578 MRQIVESEKARAEYE 592
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1412-1678 |
2.79e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1412 RAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVlqqdpqqtREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEK- 1490
Cdd:PRK03918 196 KEKEKELEEVLREINEISSELPELREELEKLEKEV--------KELEELKEEIEELEKELESLEGSKRKLEEKIRELEEr 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1491 --------AEIKEKVVFSESVQVEkgdtEQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELEfynsKSSKELDFLREE 1562
Cdd:PRK03918 268 ieelkkeiEELEEKVKELKELKEK----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIE----ERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1563 NHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIDSGTHLNSrLWSLEKELDDLKKMSKDKDLEIDELQRRLGSVA 1642
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLT-PEKLEKELEELEKAKEEIEEEISKITARIGELK 418
|
250 260 270
....*....|....*....|....*....|....*...
gi 112421039 1643 VKREQRENHLR--RSIVVIDPDTGRELSpeEAHRAGLI 1678
Cdd:PRK03918 419 KEIKELKKAIEelKKAKGKCPVCGRELT--EEHRKELL 454
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
940-1261 |
2.82e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 940 PDPALEESFQQLQQ---TLAEEQHKNQLLQEELGALQLRLQALEQET-------RDGGQEYVvkEVLRIEPDRAQEDE-- 1007
Cdd:PRK04863 835 PEAELRQLNRRRVElerALADHESQEQQQRSQLEQAKEGLSALNRLLprlnllaDETLADRV--EEIREQLDEAEEAKrf 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1008 -------VLQLREELEALR---RQKGAREAEVLLLQQRVAALAAEKSRVQEKVTEREVVKLQNDPQLEAE----YRRLQE 1073
Cdd:PRK04863 913 vqqhgnaLAQLEPIVSVLQsdpEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKnsdlNEKLRQ 992
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1074 EHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEvlkvEKDAAVEREVNDLTRQY-EDEAAKARSGQREKTEL 1152
Cdd:PRK04863 993 RLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKR----QMLQELKQELQDLGVPAdSGAEERARARRDELHAR 1068
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1153 LRKiwaleeenakvvVQEKVREIVRPDPKAESEVANLRLELVEQERKFRGAEEQL----KSYQSELEALRNRGpqVEvKE 1228
Cdd:PRK04863 1069 LSA------------NRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVvnakAGWCAVLRLVKDNG--VE-RR 1133
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 112421039 1229 VTKEVIKYTTDPE----TEQELQRLR------EEIMDKTRLIE 1261
Cdd:PRK04863 1134 LHRRELAYLSADElrsmSDKALGALRlavadnEHLRDVLRLSE 1176
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1421-1540 |
2.88e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1421 LQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHAL-LRAQLEEERHRRQLLEGELEPLRRKLAALE------KAEI 1493
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRrLEEQVERLEAEVEELEAELEEKDERIERLErelseaRSEE 457
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 112421039 1494 KEKVVFSESVQVekgdTEQEIQRLKKSLEEESQSKRELDSEVTRLEA 1540
Cdd:COG2433 458 RREIRKDREISR----LDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
903-1603 |
3.19e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.52 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 903 RRQQLENEVKSAQEEIQTLKDQGPQESLVRKEVLKKVPD--PALEESFQQLQQ----TLAEEQHKNQLLQEELGALQLRL 976
Cdd:pfam12128 284 TSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSelEALEDQHGAFLDadieTAAADQEQLPSWQSELENLEERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 977 QALEQETRDGGQEYvvkEVLRIEPDRAQEDEVLQLREELEALR--RQKGAREAEVLL----------LQQRVAALAAEKS 1044
Cdd:pfam12128 364 KALTGKHQDVTAKY---NRRRSKIKEQNNRDIAGIKDKLAKIReaRDRQLAVAEDDLqaleselreqLEAGKLEFNEEEY 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1045 RVQEKVTEREVvkLQNDPQLEAEYRRLQEEHQregTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEVLKVEKDAAV 1124
Cdd:pfam12128 441 RLKSRLGELKL--RLNQATATPELLLQLENFD---ERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1125 EREVNDLTRQYEDEAAKARSgqreKTELLRKIWALEEEN-AKVVVQEK------VREIVRPDPKAESEVANLRLELveqe 1197
Cdd:pfam12128 516 EERQSALDELELQLFPQAGT----LLHFLRKEAPDWEQSiGKVISPELlhrtdlDPEVWDGSVGGELNLYGVKLDL---- 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1198 rkfrgAEEQLKSYQSELEALRNRGPQVEvkevtkevikytTDPETEQELQRLREEIMDKTRL-IERCDLEiyqLKQEIQA 1276
Cdd:pfam12128 588 -----KRIDVPEWAASEEELRERLDKAE------------EALQSAREKQAAAEEQLVQANGeLEKASRE---ETFARTA 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1277 LKDTKPQVQTREVVQEILQFQEDPQTKKEVESL--RIQLSEEQKKQVDLEGERASQEEKIKRKEEELA-QGKERVVRQEV 1353
Cdd:pfam12128 648 LKNARLDLRRLFDEKQSEKDKKNKALAERKDSAneRLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEkQAYWQVVEGAL 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1354 VQYEDEpdLRAEVTAFTNSIDAELRQIDK-LHVELRRLQ------HRRAELERQLEELERERQARRAAELEVQRLQQRLA 1426
Cdd:pfam12128 728 DAQLAL--LKAAIAARRSGAKAELKALETwYKRDLASLGvdpdviAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETW 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1427 ALEQEEAKTGEKVTHTQKVVLQQD-PQQTREHALLRAQLEEERHRRQLLEGELEPLRRKLAALEK--AEIKEKVVfSESV 1503
Cdd:pfam12128 806 LQRRPRLATQLSNIERAISELQQQlARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSklATLKEDAN-SEQA 884
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1504 QVEKGDTEQEIQRLKKSLEEESQS-KRELDSEVTRLEAKL-SELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQ 1581
Cdd:pfam12128 885 QGSIGERLAQLEDLKLKRDYLSESvKKYVEHFKNVIADHSgSGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQWFD 964
|
730 740
....*....|....*....|..
gi 112421039 1582 SEIEMAATETRDLKNITTIDSG 1603
Cdd:pfam12128 965 VRVPQSIMVLREQVSILGVDLT 986
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1417-1546 |
3.90e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1417 EVQRLQQRLAALEQEEAktgekvthtqkvvlqqdpqqtrehALLRAQLEEERHRRQLLEGELEPLRRKLAALEKAEIKEK 1496
Cdd:COG0542 412 ELDELERRLEQLEIEKE------------------------ALKKEQDEASFERLAELRDELAELEEELEALKARWEAEK 467
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 112421039 1497 VVFsesvqvekgdteQEIQRLKKSLEEESQSKRELDSEVTRLEAKLSELE 1546
Cdd:COG0542 468 ELI------------EEIQELKEELEQRYGKIPELEKELAELEEELAELA 505
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1241-1650 |
4.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1241 ETEQELQRLREEIMDKTRLIERCDLEIYQLKQEIQALKDTKPQVQTREVVQEIlqfqedpqtKKEVESLRIQLSEEQKKQ 1320
Cdd:COG4717 92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAEL---------PERLEELEERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1321 VDLEGERASQEEKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQ 1400
Cdd:COG4717 163 EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1401 LEELERERQARRAAELEVqrlqqrLAALEQEEAKTGEKVTHTQKVVLQQDPqqtreHALLRAQLEEERHRRQLLEGELEP 1480
Cdd:COG4717 243 ERLKEARLLLLIAAALLA------LLGLGGSLLSLILTIAGVLFLVLGLLA-----LLFLLLAREKASLGKEAEELQALP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1481 LRRKLAALEKAEIKEKVVFSESVQVEK-GDTEQEIQRLKKSLEEESQSKRELDSEVTRLEAKlSELEFYNSKSSKELdfl 1559
Cdd:COG4717 312 ALEELEEEELEELLAALGLPPDLSPEElLELLDRIEELQELLREAEELEEELQLEELEQEIA-ALLAEAGVEDEEEL--- 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1560 rEENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIDSgthlnsrlwsLEKELDDLKKMSKDKDLEIDELQRRLG 1639
Cdd:COG4717 388 -RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE----------LEEELEELEEELEELEEELEELREELA 456
|
410
....*....|.
gi 112421039 1640 SVAVKREQREN 1650
Cdd:COG4717 457 ELEAELEQLEE 467
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
766-1164 |
4.39e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 766 KNQKNLLDELASREQEVQKVYADSQQYQQAVKDYELEAEKLRSLLDLENGRNSHVNKRARLQSpAAKVKEEEAALAAKFT 845
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 846 EVNAINRQRLQNLEFALNLLRQQPEAGVTHETLQGGKLSSGMEETWKIKKELEEEIERRQQLENEVKSAQEEIQTLKDQG 925
Cdd:COG4717 143 ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 926 PQESLVRKEVLKKVPDPALEESFQQLQQTL------------AEEQHKNQLLQEELGALQLRLQALEQETRDGGQEYVVK 993
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLliaaallallglGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 994 EVLRIEPDRAQED-EVLQLREELEALRRQKGAREAEVLLL-------QQRVAALAAEKSRVQEKVTEREVVKL--QNDPQ 1063
Cdd:COG4717 303 EAEELQALPALEElEEEELEELLAALGLPPDLSPEELLELldrieelQELLREAEELEEELQLEELEQEIAALlaEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1064 LEAEYRRLQEEHQRegtlREKQEEELSFLQAKLRRLEKEramaegkitVKEVLKVEKDAAVEREVNDLTRQYEDEAAKAR 1143
Cdd:COG4717 383 DEEELRAALEQAEE----YQELKEELEELEEQLEELLGE---------LEELLEALDEEELEEELEELEEELEELEEELE 449
|
410 420
....*....|....*....|.
gi 112421039 1144 SGQREKTELLRKIWALEEENA 1164
Cdd:COG4717 450 ELREELAELEAELEQLEEDGE 470
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1002-1433 |
5.39e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1002 RAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKsRVQEKVTEREvvklqndpQLEAEYRRLQEEHQREgtl 1081
Cdd:COG4717 84 EEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL-QLLPLYQELE--------ALEAELAELPERLEEL--- 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1082 rEKQEEELSFLQAKLRRLEKERAMAEGKItvkEVLKVEKDAAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEE 1161
Cdd:COG4717 152 -EERLEELRELEEELEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1162 ENAKVVVQEKVREIVRP--DPKAESEVANLRLELVEQERKFRGAEEQLKSYQSELEAL-------RNRGPQVEVKEVTKE 1232
Cdd:COG4717 228 ELEQLENELEAAALEERlkEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLlallfllLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1233 VIKYTTDPETEQELQRLREEIMDKTRL----IERCDLEIYQLKQEIQALKDTKPQVQTREVVQEILQFQEDPQTKKEVEs 1308
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLspeeLLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEE- 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1309 lRIQLSEEQKKQVDLEGERASQEEKIKRKEEElaqgkervvRQEVVQYEDEPDLRAEVTAFTNSIDAELRQIDKLHVELR 1388
Cdd:COG4717 387 -LRAALEQAEEYQELKEELEELEEQLEELLGE---------LEELLEALDEEELEEELEELEEELEELEEELEELREELA 456
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 112421039 1389 RLQHRRAELERQLEElererqarRAAELEVQRLQQRLAALEQEEA 1433
Cdd:COG4717 457 ELEAELEQLEEDGEL--------AELLQELEELKAELRELAEEWA 493
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1002-1122 |
6.73e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1002 RAQEDEVLQLREELEALRRQKGAREAEVLLLQQRvaaLAAEKSRVQEKV-TEREVVKlqndpqLEAEYRRLQEEhqregt 1080
Cdd:COG2433 416 RRLEEQVERLEAEVEELEAELEEKDERIERLERE---LSEARSEERREIrKDREISR------LDREIERLERE------ 480
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 112421039 1081 lREKQEEELSFLQAKLRRLEKERAM--AEGKITVKEVLKVEKDA 1122
Cdd:COG2433 481 -LEEERERIEELKRKLERLKELWKLehSGELVPVKVVEKFTKEA 523
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
961-1425 |
7.32e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 961 KNQLLQEELGALQLRLQALEQETRDGGQEYVVKEVLRIEPDRAQEdEVLQLREELEALRRQKGARE--AEVLLLQQRVAA 1038
Cdd:COG4717 65 KPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEA-ELEELREELEKLEKLLQLLPlyQELEALEAELAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1039 LAAEKSRVQEKVTEREVVKLQNDpQLEAEYRRLQEEHQREGT-LREKQEEELSFLQAKLRRLEKERAMAEGKITVKEvlk 1117
Cdd:COG4717 144 LPERLEELEERLEELRELEEELE-ELEAELAELQEELEELLEqLSLATEEELQDLAEELEELQQRLAELEEELEEAQ--- 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1118 vEKDAAVEREVNDLTRQYEDEAAKARsgQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLELVEQE 1197
Cdd:COG4717 220 -EELEELEEELEQLENELEAAALEER--LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1198 RKFRGAEEQLKSYQSELEALRNRGPQVEVKEVT-KEVIKYTTDPETEQELQRLREEIMDKTRLIERcdLEIYQLKQEIQA 1276
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEE--LQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1277 LKDTKPQVQTREVVQEILQFQEDPQTKKEVESLRIQLSEEqkkqvdlegERASQEEKIKRKEEELAQGKERVVRQEVVQY 1356
Cdd:COG4717 375 LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEL---------LGELEELLEALDEEELEEELEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112421039 1357 EDEPDLRAEVTAftnsIDAELRQIDKLHvELRRLQHRRAELERQLEELERERQARRAAELEVQRLQQRL 1425
Cdd:COG4717 446 EELEELREELAE----LEAELEQLEEDG-ELAELLQELEELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1036-1262 |
7.45e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 7.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1036 VAALAAEKSRVQEKVTEREVVKLQNDP-QLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKE 1114
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIaELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1115 vlkvEKDAAVEREVNDLTRQYEDEAAKA-RSGQREKTELLrkiWALEEENAKVVVQEKVREIVRPDPKAESEVANLRLEL 1193
Cdd:COG4942 90 ----KEIAELRAELEAQKEELAELLRALyRLGRQPPLALL---LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1194 VEQERKFRGAEEQLKSYQSELEALRNRgPQVEVKEVTKEVIKYTTD-PETEQELQRLREEIMDKTRLIER 1262
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAA-LEALKAERQKLLARLEKElAELAAELAELQQEAEELEALIAR 231
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1658-1686 |
7.98e-03 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 35.77 E-value: 7.98e-03
10 20
....*....|....*....|....*....
gi 112421039 1658 VIDPDTGRELSPEEAHRAGLIDWKMFVKL 1686
Cdd:pfam00681 11 IIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| Paralemmin |
pfam03285 |
Paralemmin; |
1461-1582 |
8.58e-03 |
|
Paralemmin;
Pssm-ID: 460875 Cd Length: 301 Bit Score: 40.11 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112421039 1461 RAQLEEERHRRQLlegelEPLRRKLAALEKAEIKEKVVfsesVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEA 1540
Cdd:pfam03285 5 KRQTEIENKRRQL-----EDDRRQLQHLKSKALRERWL----LEGPPSSASEEDEARRRQEEEDEQKKKLLEEIIRRLEE 75
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 112421039 1541 KLSELEFYNSKSSKElDFLREENHKLQLERQNLQLETRRLQS 1582
Cdd:pfam03285 76 EIELLEEESSISAKK-ENLAEKLLEITVEKDKVTGETRVLSS 116
|
|
| |
