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Conserved domains on  [gi|113195690|ref|NP_034894|]
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lysosomal alpha-mannosidase isoform 1 precursor [Mus musculus]

Protein Classification

glycoside hydrolase family 38 protein( domain architecture ID 11586996)

glycoside hydrolase family 38 (GH38) protein such as lysosomal alpha-mannosidase (LAM or Man2B1), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GH38N_AMII_LAM_like cd10810
N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside ...
63-341 0e+00

N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base.


:

Pssm-ID: 212121 [Multi-domain]  Cd Length: 278  Bit Score: 539.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYYGILSDVQHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:cd10810     1 LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDGLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:cd10810    81 VKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPRVGWQIDPFGHSRTQASLFAQMGFDGLFFGRID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDKLNRKKKLRMEELWRASDSLePPAADLFTGVLPNNYNPPKYLCWDVLCTDPPVVDNPRSPEFNAKTLVNYFLKLASS 302
Cdd:cd10810   161 YQDKAQRLKNKEMEFIWRGSPSL-GPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDPNLEDYNVDERVDDFVQYAKE 239
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 113195690  303 QKGFYRTNHTVMTMGSDFHYENANMWFKNMDKLIRLVNA 341
Cdd:cd10810   240 QAQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVNK 278
PLN02701 super family cl26659
alpha-mannosidase
63-906 7.66e-107

alpha-mannosidase


The actual alignment was detected with superfamily member PLN02701:

Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 357.18  E-value: 7.66e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYygilsdvQHASvQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:PLN02701   40 LKVFVVPHSHNDPGWILTVEEYY-------QEQS-RHILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPSKKEAFTKL 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSdgLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:PLN02701  112 VKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGV--APKNSWAIDPFGYSSTMAYLLRRMGFENMLIQRTH 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDK--LNRKKKLrmEELWRAS-DSLEppAADLFTGVL-------PNNYNPPKYLC-----WDV------LCT--DPPVV 279
Cdd:PLN02701  190 YEVKkeLAQNKNL--EYIWRQSwDAEE--TTDIFVHMMpfysydiPHTCGPEPAICcqfdfARMrgfqyeLCPwgKHPVE 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  280 DNPRSPEFNAKTLVNYFLKLASsqkgFYRTNHTVMTMGSDFHY---ENANMWFKNMDKLIRLVNA--------------- 341
Cdd:PLN02701  266 TNDENVQERAMKLLDQYRKKST----LYRTNTLLVPLGDDFRYisiDEAEAQFRNYQKLFDYINSnpslkaevkfgtled 341
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  342 --QQVNGSLVHVLYSTPTcylwELNKANLT-WTVKEDDFFPYADGPHMFWTGYFSSRPALKRYERLSYNFLQVCNQLEAL 418
Cdd:PLN02701  342 yfSTLRDEADRINYSRPG----EVGSGEVPgFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFSF 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  419 VGPEANVG-----PYGSGDSAPLQ-EAMAVLQHHDAVSGTARQNVVNDYARQLAAGWGPCEVLVSNALARL---SHYK-- 487
Cdd:PLN02701  418 LLGYCRRFqceklPTSFSYKLTAArRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLlgiRHEKsd 497
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  488 QNFSF-----------CRELNISICPVSQTSERfqVTLYNPLGRKVDQMVRLpvyegnfIVKDPHDKNISSNVVMVPSYY 556
Cdd:PLN02701  498 QTPSWfepeqsrskydMLPVHKVINLREGKAHR--VVFFNPLEQTREEVVMV-------VVDRPAVCVFDSNWTCVPSQI 568
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  557 SETYQWE----------LLFPASVPALGFSTYSVAKMSDLNHQAH----NLLSRPRK-------HKSHH---VLVIENKY 612
Cdd:PLN02701  569 SPEWQHDgeklftgrhrLYWKASVPALGLETYFIANGNVSCEKAVpaklKVFNSDDKfpcpepySCSKLegdTVEISNSH 648
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  613 MRATFDSGTGLLMKIENLEQNLSLPVSQGFFWYnasvgdeeSSQASGAYIFRPN-VGKPIpVSRWAQISLVKTALVQEVH 691
Cdd:PLN02701  649 QTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMY--------SSQGSGAYLFKPDgEAQPI-VQAGGLVVVSEGPLVQEVH 719
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  692 -QNFSAW----CSQVIRLYKGQRHL-----ELEWTVGPI-PVRDDwgKEVISRFDTPMKTKGQFFTDSNGREILkRRDDY 760
Cdd:PLN02701  720 sVPKTKWekspLSRSTRLYHGGKSVqdlsvEKEYHVELLgHDFND--KELIVRFKTDIDNKRVFYSDLNGFQMS-RRETY 796
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  761 RPTwtlnqtePVAGNYYPVNTRIYITDGQMQ-LTVLTDRSQGGSSLQDGSLELMVHRRLLVDDDRGVSEPLLETDTGDKV 839
Cdd:PLN02701  797 DKI-------PLQGNYYPMPSLAFLQGSNGQrFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNRPMNVV 869
                         890       900       910       920       930       940       950
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 113195690  840 rgRHLVLLSSVSDAAARHRLLAEQEVLAPQVV--------LSLGGSSPYHS--RATPKTQFSGLRQELPPQVHLLTL 906
Cdd:PLN02701  870 --FHLLLESNISSSPPASNPLPLQPSLLSHRVgahlnypmHAFLAKKPQATsvENPQDTSFAPLAKPLPCDLHIVNF 944
 
Name Accession Description Interval E-value
GH38N_AMII_LAM_like cd10810
N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside ...
63-341 0e+00

N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base.


Pssm-ID: 212121 [Multi-domain]  Cd Length: 278  Bit Score: 539.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYYGILSDVQHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:cd10810     1 LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDGLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:cd10810    81 VKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPRVGWQIDPFGHSRTQASLFAQMGFDGLFFGRID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDKLNRKKKLRMEELWRASDSLePPAADLFTGVLPNNYNPPKYLCWDVLCTDPPVVDNPRSPEFNAKTLVNYFLKLASS 302
Cdd:cd10810   161 YQDKAQRLKNKEMEFIWRGSPSL-GPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDPNLEDYNVDERVDDFVQYAKE 239
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 113195690  303 QKGFYRTNHTVMTMGSDFHYENANMWFKNMDKLIRLVNA 341
Cdd:cd10810   240 QAQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVNK 278
PLN02701 PLN02701
alpha-mannosidase
63-906 7.66e-107

alpha-mannosidase


Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 357.18  E-value: 7.66e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYygilsdvQHASvQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:PLN02701   40 LKVFVVPHSHNDPGWILTVEEYY-------QEQS-RHILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPSKKEAFTKL 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSdgLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:PLN02701  112 VKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGV--APKNSWAIDPFGYSSTMAYLLRRMGFENMLIQRTH 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDK--LNRKKKLrmEELWRAS-DSLEppAADLFTGVL-------PNNYNPPKYLC-----WDV------LCT--DPPVV 279
Cdd:PLN02701  190 YEVKkeLAQNKNL--EYIWRQSwDAEE--TTDIFVHMMpfysydiPHTCGPEPAICcqfdfARMrgfqyeLCPwgKHPVE 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  280 DNPRSPEFNAKTLVNYFLKLASsqkgFYRTNHTVMTMGSDFHY---ENANMWFKNMDKLIRLVNA--------------- 341
Cdd:PLN02701  266 TNDENVQERAMKLLDQYRKKST----LYRTNTLLVPLGDDFRYisiDEAEAQFRNYQKLFDYINSnpslkaevkfgtled 341
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  342 --QQVNGSLVHVLYSTPTcylwELNKANLT-WTVKEDDFFPYADGPHMFWTGYFSSRPALKRYERLSYNFLQVCNQLEAL 418
Cdd:PLN02701  342 yfSTLRDEADRINYSRPG----EVGSGEVPgFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFSF 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  419 VGPEANVG-----PYGSGDSAPLQ-EAMAVLQHHDAVSGTARQNVVNDYARQLAAGWGPCEVLVSNALARL---SHYK-- 487
Cdd:PLN02701  418 LLGYCRRFqceklPTSFSYKLTAArRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLlgiRHEKsd 497
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  488 QNFSF-----------CRELNISICPVSQTSERfqVTLYNPLGRKVDQMVRLpvyegnfIVKDPHDKNISSNVVMVPSYY 556
Cdd:PLN02701  498 QTPSWfepeqsrskydMLPVHKVINLREGKAHR--VVFFNPLEQTREEVVMV-------VVDRPAVCVFDSNWTCVPSQI 568
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  557 SETYQWE----------LLFPASVPALGFSTYSVAKMSDLNHQAH----NLLSRPRK-------HKSHH---VLVIENKY 612
Cdd:PLN02701  569 SPEWQHDgeklftgrhrLYWKASVPALGLETYFIANGNVSCEKAVpaklKVFNSDDKfpcpepySCSKLegdTVEISNSH 648
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  613 MRATFDSGTGLLMKIENLEQNLSLPVSQGFFWYnasvgdeeSSQASGAYIFRPN-VGKPIpVSRWAQISLVKTALVQEVH 691
Cdd:PLN02701  649 QTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMY--------SSQGSGAYLFKPDgEAQPI-VQAGGLVVVSEGPLVQEVH 719
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  692 -QNFSAW----CSQVIRLYKGQRHL-----ELEWTVGPI-PVRDDwgKEVISRFDTPMKTKGQFFTDSNGREILkRRDDY 760
Cdd:PLN02701  720 sVPKTKWekspLSRSTRLYHGGKSVqdlsvEKEYHVELLgHDFND--KELIVRFKTDIDNKRVFYSDLNGFQMS-RRETY 796
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  761 RPTwtlnqtePVAGNYYPVNTRIYITDGQMQ-LTVLTDRSQGGSSLQDGSLELMVHRRLLVDDDRGVSEPLLETDTGDKV 839
Cdd:PLN02701  797 DKI-------PLQGNYYPMPSLAFLQGSNGQrFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNRPMNVV 869
                         890       900       910       920       930       940       950
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 113195690  840 rgRHLVLLSSVSDAAARHRLLAEQEVLAPQVV--------LSLGGSSPYHS--RATPKTQFSGLRQELPPQVHLLTL 906
Cdd:PLN02701  870 --FHLLLESNISSSPPASNPLPLQPSLLSHRVgahlnypmHAFLAKKPQATsvENPQDTSFAPLAKPLPCDLHIVNF 944
Glyco_hydro_38N pfam01074
Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of ...
64-381 5.51e-99

Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 426030 [Multi-domain]  Cd Length: 271  Bit Score: 312.64  E-value: 5.51e-99
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690    64 NVHLLPHTHDDVGWLKTVDQYyygilsdvqHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQtSATQDAVRNLV 143
Cdd:pfam01074    1 TVHLVGHSHIDVGWLWTVDET---------RRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQ-PELFKRIKKLV 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   144 RQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGsdGLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRIDY 223
Cdd:pfam01074   71 AEGRLEPVGGGWVEPDENLPSGESLIRQFLYGQRFFKEEFG--VRPRVGWLPDPFGYSATLPQILKQAGIDYFLTQRLHW 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   224 QDKLNRKKKLRMEelWRASDSleppaADLFTGVLPNNYNPPKYLCWDVlctdppvvdnprspefNAKTLVNYFLKLASSq 303
Cdd:pfam01074  149 NDKNKFNPHLEFI--WRGSDG-----TEIFTHMPPFDYYPTYGFQFQE----------------RAEDLLAYARNYADK- 204
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 113195690   304 kgfYRTNHTVMTMGSDfhyenaNMWFKNMDKLIRLVNAQQVNGSLVHVLYSTPTCYLWELNKAnlTWTVKEDDFFPYA 381
Cdd:pfam01074  205 ---TRTNHVLLPFGDG------DGGGGPTDEMLEYINRWNALPGLPKVQYGTPSDYFDALEKA--TWPTKTDDFPPYA 271
Glyco_hydro_38C pfam07748
Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of ...
608-824 3.26e-57

Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 400208 [Multi-domain]  Cd Length: 204  Bit Score: 195.94  E-value: 3.26e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   608 IENKYMRATFDSGTGLLMKIENLEQN--LSLPVSQGFFWYnasvgdEESSQASGAYIFRPNVG-KPIPVSRWAQISLVKT 684
Cdd:pfam07748    1 LENGFLKVEFDNDTGTLTSIYDKELSreVLAEVGNQFGLY------EDIPGYSDAWDFRPFYEaKPLEVDEQSIEVVEDG 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   685 ALVQEVHQNFSAW---CSQVIRLYKGQRHLELEWTVGPIpvrddwGKEVISRFDTPMKTKGQFFTDSNGREILKRRDDYR 761
Cdd:pfam07748   75 PLVAEVHVKFKIGgseISQVIRLYKGSPRLEFETTVDWH------EREVLLKVAFPIDSQAEFATDENGFGVIKRPTHQN 148
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 113195690   762 PTWTLNQTEPvagnyyPVNTRIYITDGQMQLTVLTDRSQGGSSlQDGSLELMVHRRLLVDDDR 824
Cdd:pfam07748  149 TSWDLARFEV------PIHSWVDLSDSNYGVSLLNDSKYGGSS-LDGQLELSLLRRPLYPDPR 204
Alpha-mann_mid smart00872
Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase ...
387-465 2.30e-25

Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 214875 [Multi-domain]  Cd Length: 79  Bit Score: 100.32  E-value: 2.30e-25
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 113195690    387 FWTGYFSSRPALKRYERLSYNFLQVCNQLEALVGPEANVGPYGSGDSAPLQEAMAVLQHHDAVSGTARQNVVNDYARQL 465
Cdd:smart00872    1 YHRGTYTSRPYLKRLNRRAESLLRAAEELAALAALLSLGYKYPSEQLEELWKALLLNQHHDAITGTSIDEVYDDYEKRL 79
 
Name Accession Description Interval E-value
GH38N_AMII_LAM_like cd10810
N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside ...
63-341 0e+00

N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base.


Pssm-ID: 212121 [Multi-domain]  Cd Length: 278  Bit Score: 539.49  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYYGILSDVQHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:cd10810     1 LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIAFFSRWWREQSEDTRQKVKKL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDGLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:cd10810    81 VKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDTFGECARPRVGWQIDPFGHSRTQASLFAQMGFDGLFFGRID 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDKLNRKKKLRMEELWRASDSLePPAADLFTGVLPNNYNPPKYLCWDVLCTDPPVVDNPRSPEFNAKTLVNYFLKLASS 302
Cdd:cd10810   161 YQDKAQRLKNKEMEFIWRGSPSL-GPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDPNLEDYNVDERVDDFVQYAKE 239
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 113195690  303 QKGFYRTNHTVMTMGSDFHYENANMWFKNMDKLIRLVNA 341
Cdd:cd10810   240 QAQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVNK 278
GH38N_AMII_euk cd00451
N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase ...
63-340 2.64e-114

N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38); The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212095 [Multi-domain]  Cd Length: 258  Bit Score: 352.68  E-value: 2.64e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYygilsdvqHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:cd00451     1 LNVHLIPHSHCDVGWLKTFDEYY--------NGDVKSILDSVVKALNNDPERKFIWAEIGFLERWWEDQGNDTKQQFKKL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGsdGLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:cd00451    73 VKNGQLEFVGGGWVMNDEACTTYESIIDQMTEGHQFLKDTFG--VRPRVGWQIDPFGHSSTTPTLFSKMGFKGLVINRIP 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDKLNRKKKLRMEELWRASDSLEpPAADLFTGVLPNNYNPPKYLCWDvlctDPPVVDnprspeFNAKTLVNYFLKLASS 302
Cdd:cd00451   151 YSLKAEMKDNKQLEFVWRGSPSLG-PDSEIFTHVLDDHYSYPESLDFG----GPPITD------YNIAERADEFVEYIKK 219
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 113195690  303 QKGFYRTNHTVMTMGSDFHYENANMWFKNMDKLIRLVN 340
Cdd:cd00451   220 RSKTYRTNHILIPLGDDFRFKNASLQFSNMDKLIAYIN 257
PLN02701 PLN02701
alpha-mannosidase
63-906 7.66e-107

alpha-mannosidase


Pssm-ID: 178304 [Multi-domain]  Cd Length: 1050  Bit Score: 357.18  E-value: 7.66e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYygilsdvQHASvQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:PLN02701   40 LKVFVVPHSHNDPGWILTVEEYY-------QEQS-RHILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPSKKEAFTKL 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSdgLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:PLN02701  112 VKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGV--APKNSWAIDPFGYSSTMAYLLRRMGFENMLIQRTH 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDK--LNRKKKLrmEELWRAS-DSLEppAADLFTGVL-------PNNYNPPKYLC-----WDV------LCT--DPPVV 279
Cdd:PLN02701  190 YEVKkeLAQNKNL--EYIWRQSwDAEE--TTDIFVHMMpfysydiPHTCGPEPAICcqfdfARMrgfqyeLCPwgKHPVE 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  280 DNPRSPEFNAKTLVNYFLKLASsqkgFYRTNHTVMTMGSDFHY---ENANMWFKNMDKLIRLVNA--------------- 341
Cdd:PLN02701  266 TNDENVQERAMKLLDQYRKKST----LYRTNTLLVPLGDDFRYisiDEAEAQFRNYQKLFDYINSnpslkaevkfgtled 341
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  342 --QQVNGSLVHVLYSTPTcylwELNKANLT-WTVKEDDFFPYADGPHMFWTGYFSSRPALKRYERLSYNFLQVCNQLEAL 418
Cdd:PLN02701  342 yfSTLRDEADRINYSRPG----EVGSGEVPgFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFSF 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  419 VGPEANVG-----PYGSGDSAPLQ-EAMAVLQHHDAVSGTARQNVVNDYARQLAAGWGPCEVLVSNALARL---SHYK-- 487
Cdd:PLN02701  418 LLGYCRRFqceklPTSFSYKLTAArRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLlgiRHEKsd 497
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  488 QNFSF-----------CRELNISICPVSQTSERfqVTLYNPLGRKVDQMVRLpvyegnfIVKDPHDKNISSNVVMVPSYY 556
Cdd:PLN02701  498 QTPSWfepeqsrskydMLPVHKVINLREGKAHR--VVFFNPLEQTREEVVMV-------VVDRPAVCVFDSNWTCVPSQI 568
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  557 SETYQWE----------LLFPASVPALGFSTYSVAKMSDLNHQAH----NLLSRPRK-------HKSHH---VLVIENKY 612
Cdd:PLN02701  569 SPEWQHDgeklftgrhrLYWKASVPALGLETYFIANGNVSCEKAVpaklKVFNSDDKfpcpepySCSKLegdTVEISNSH 648
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  613 MRATFDSGTGLLMKIENLEQNLSLPVSQGFFWYnasvgdeeSSQASGAYIFRPN-VGKPIpVSRWAQISLVKTALVQEVH 691
Cdd:PLN02701  649 QTLGFDVKTGLLRKIKIHKNGSETVVGEEIGMY--------SSQGSGAYLFKPDgEAQPI-VQAGGLVVVSEGPLVQEVH 719
                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  692 -QNFSAW----CSQVIRLYKGQRHL-----ELEWTVGPI-PVRDDwgKEVISRFDTPMKTKGQFFTDSNGREILkRRDDY 760
Cdd:PLN02701  720 sVPKTKWekspLSRSTRLYHGGKSVqdlsvEKEYHVELLgHDFND--KELIVRFKTDIDNKRVFYSDLNGFQMS-RRETY 796
                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  761 RPTwtlnqtePVAGNYYPVNTRIYITDGQMQ-LTVLTDRSQGGSSLQDGSLELMVHRRLLVDDDRGVSEPLLETDTGDKV 839
Cdd:PLN02701  797 DKI-------PLQGNYYPMPSLAFLQGSNGQrFSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNRPMNVV 869
                         890       900       910       920       930       940       950
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 113195690  840 rgRHLVLLSSVSDAAARHRLLAEQEVLAPQVV--------LSLGGSSPYHS--RATPKTQFSGLRQELPPQVHLLTL 906
Cdd:PLN02701  870 --FHLLLESNISSSPPASNPLPLQPSLLSHRVgahlnypmHAFLAKKPQATsvENPQDTSFAPLAKPLPCDLHIVNF 944
Glyco_hydro_38N pfam01074
Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of ...
64-381 5.51e-99

Glycosyl hydrolases family 38 N-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 426030 [Multi-domain]  Cd Length: 271  Bit Score: 312.64  E-value: 5.51e-99
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690    64 NVHLLPHTHDDVGWLKTVDQYyygilsdvqHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQtSATQDAVRNLV 143
Cdd:pfam01074    1 TVHLVGHSHIDVGWLWTVDET---------RRKVQRTFSSVLALLDRDPDRRFIWSEAQFFAWWWEDQ-PELFKRIKKLV 70
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   144 RQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGsdGLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRIDY 223
Cdd:pfam01074   71 AEGRLEPVGGGWVEPDENLPSGESLIRQFLYGQRFFKEEFG--VRPRVGWLPDPFGYSATLPQILKQAGIDYFLTQRLHW 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   224 QDKLNRKKKLRMEelWRASDSleppaADLFTGVLPNNYNPPKYLCWDVlctdppvvdnprspefNAKTLVNYFLKLASSq 303
Cdd:pfam01074  149 NDKNKFNPHLEFI--WRGSDG-----TEIFTHMPPFDYYPTYGFQFQE----------------RAEDLLAYARNYADK- 204
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 113195690   304 kgfYRTNHTVMTMGSDfhyenaNMWFKNMDKLIRLVNAQQVNGSLVHVLYSTPTCYLWELNKAnlTWTVKEDDFFPYA 381
Cdd:pfam01074  205 ---TRTNHVLLPFGDG------DGGGGPTDEMLEYINRWNALPGLPKVQYGTPSDYFDALEKA--TWPTKTDDFPPYA 271
GH38N_AMII_like cd10786
N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside ...
64-341 8.65e-76

N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38); Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212098 [Multi-domain]  Cd Length: 251  Bit Score: 249.24  E-value: 8.65e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   64 NVHLLPHTHDDVGWLKTVDQYYYgilsdvqhASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTsATQDAVRNLV 143
Cdd:cd10786     1 TVHLVPHSHYDVGWLQTFEQYYQ--------INFKAILDKALRLLDANPEYKFLIEEVILLERYWDVRP-DLKAKLKQAV 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  144 RQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDglPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRIDY 223
Cdd:cd10786    72 RSGRLEIAGGGYVMPDTNLPDGESLVRQILLGKRWLKEFLGAR--PPVMWQADVFGHSPQLPQILAKSGFTGFAFGRGPY 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  224 QDKlnrKKKLRMEELWRASDSLEppaadLFTGVLPNNYNPPKYLCWDVLCTDPpvvdnprsPEFNAKTLVNYFLKLASSQ 303
Cdd:cd10786   150 SQK---RMQRPSEFLWRGLDGTR-----ILTHWMPNGYSDGPFLCGPDIPGDN--------SGPNALASLEALVEQWKKL 213
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 113195690  304 KGFYRTNHTVMTMGSDFHYENANMWFKNMDKLIRLVNA 341
Cdd:cd10786   214 AELGATNHLLMPSGGDFTIPQADPLQVNQARLVEPWNS 251
GH38N_AMII_GMII_SfManIII_like cd10809
N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 ...
63-392 1.71e-71

N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells.


Pssm-ID: 212120 [Multi-domain]  Cd Length: 340  Bit Score: 241.02  E-value: 1.71e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYygilsdvqHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:cd10809     2 LKVFVVPHSHNDPGWIKTFEEYY--------QDQTKHILDNMVDKLSKNPKMKFIWAEISFLERWWDDASPDKKEAVKKL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSdgLPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:cd10809    74 VKNGQLEIVTGGWVMTDEANSHYFAMIDQLIEGHQWLKENLGV--KPKSGWSIDPFGHSPTMPYLLKRAGFKNMVIQRIH 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDK--LNRKKKLrmEELWRAS-DSLEPPaaDLFTGVLP-NNYNPP---------------------KYLC-WDVlctdP 276
Cdd:cd10809   152 YEVKkyLAQRKAL--EFMWRQYwDATGST--DILTHMMPfYSYDIPhtcgpdpavccqfdfkrlpggGESCpWKK----P 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  277 PVVDNPRSPEFNAKTLVNYFLKLASsqkgFYRTNHTVMTMGSDFHYENANMW---FKNMDKLIRLVNAQQVNGslVHVLY 353
Cdd:cd10809   224 PQPITDDNVAERAELLLDQYRKKSQ----LYRSNVVLIPLGDDFRYDSDEEWdaqYDNYQKLFDYINSNPELN--VEIQF 297
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 113195690  354 STPTCYLWELNKANLTWTVK----EDDFFPYADGPHMFWTGYF 392
Cdd:cd10809   298 GTLSDYFNALRKRTGTNTPGfptlSGDFFTYADRDDDYWSGYY 340
Glyco_hydro_38C pfam07748
Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of ...
608-824 3.26e-57

Glycosyl hydrolases family 38 C-terminal domain; Glycosyl hydrolases are key enzymes of carbohydrate metabolism.


Pssm-ID: 400208 [Multi-domain]  Cd Length: 204  Bit Score: 195.94  E-value: 3.26e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   608 IENKYMRATFDSGTGLLMKIENLEQN--LSLPVSQGFFWYnasvgdEESSQASGAYIFRPNVG-KPIPVSRWAQISLVKT 684
Cdd:pfam07748    1 LENGFLKVEFDNDTGTLTSIYDKELSreVLAEVGNQFGLY------EDIPGYSDAWDFRPFYEaKPLEVDEQSIEVVEDG 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   685 ALVQEVHQNFSAW---CSQVIRLYKGQRHLELEWTVGPIpvrddwGKEVISRFDTPMKTKGQFFTDSNGREILKRRDDYR 761
Cdd:pfam07748   75 PLVAEVHVKFKIGgseISQVIRLYKGSPRLEFETTVDWH------EREVLLKVAFPIDSQAEFATDENGFGVIKRPTHQN 148
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 113195690   762 PTWTLNQTEPvagnyyPVNTRIYITDGQMQLTVLTDRSQGGSSlQDGSLELMVHRRLLVDDDR 824
Cdd:pfam07748  149 TSWDLARFEV------PIHSWVDLSDSNYGVSLLNDSKYGGSS-LDGQLELSLLRRPLYPDPR 204
GH38N_Man2A2 cd11667
N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside ...
63-392 5.76e-54

N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine).


Pssm-ID: 212132 [Multi-domain]  Cd Length: 344  Bit Score: 191.74  E-value: 5.76e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYYGilsdvqhaSVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:cd11667     2 LQVFVVPHSHNDPGWIKTFDKYYYD--------QTQHILNSMVVKLQEDPRRRFIWSEISFFSKWWDNINAQKRAAVRRL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDglPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:cd11667    74 VGNGQLEMATGGWVMPDEANSHYFAMIDQLIEGHQWLEKNIGVT--PRSGWAVDPFGHSSTMPYILRRSNLTSMLIQRVH 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDKLNRKKKLRMEELWRasDSLEPPAA-DLFTGVLP-NNYN-------PPKYLC---------------WDVlctdPPV 278
Cdd:cd11667   152 YAIKKHFAATQSLEFMWR--QTWDPDSStDIFCHMMPfYSYDvphtcgpDPKICCqfdfkrlpggrincpWKV----PPR 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  279 VDNPRSPEFNAKTLVNYFLKlassQKGFYRTNHTVMTMGSDFHYENANMW---FKNMDKLIRLVNAQ-QVNgslVHVLYS 354
Cdd:cd11667   226 AITEANVAERAQLLLDQYRK----KSKLYRSKVLLVPLGDDFRYDKPQEWdaqFLNYQRLFDFLNSHpELH---VQAQFG 298
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 113195690  355 TPTCYLWELNKANLT--------WTVKEDDFFPYADGPHMFWTGYF 392
Cdd:cd11667   299 TLSDYFDALYKRTGVvpgmrppgFPVVSGDFFSYADREDHYWTGYY 344
GH38N_AMII_Epman_like cd10811
N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and ...
63-381 6.39e-54

N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily is represented by a novel human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) and similar proteins. Although it was previously named as epididymal alpha-mannosidase, Epman has a broadly distributed transcript expression profile. Different from the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), Epman is not associated with genetic alpha-mannosidosis that is caused by the absence of LAM. Furthermore, Epman has unique substrate specificity. It can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. In contrast, the major LAM can cleave all of the alpha-linked mannose residues from high mannose oligosaccharides except the core alpha 1,6-linked mannose residue. Moreover, it is suggested that the catalytic activity of Epman is dependent on prior action by di-N-acetyl-chitobiase (chitobiase), which indicates there is a functional cooperation between these two enzymes for the full and efficient catabolism of mammalian lysosomal N-glycan core structures. Epman has an acidic pH optimum. It is strongly stimulated by cobalt or zinc ions and strongly inhibited by furanose analogues swainsonine (SW) and 1,4-dideoxy-1,4-imino-d-mannitol (DIM).


Pssm-ID: 212122 [Multi-domain]  Cd Length: 326  Bit Score: 191.25  E-value: 6.39e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQyyygilsdVQHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDA-VRN 141
Cdd:cd10811     1 IQAFVIPHSHMDVGWVYTVQE--------SMHAYAANVYTSVVEELMRGKQRRFIAVEQEFFRLWWDGVATDKQKQqVRQ 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  142 LVRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDglPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRI 221
Cdd:cd10811    73 LLSEGRLEFVIGGQVMHDEAVTELDDQILQLTEGHGFLYETFGVR--PRFSWHVDPFGASATTPTLFALAGFNAHLISRI 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  222 DYQDKLNRKKKLRMEELWRASDSLEpPAADLFTGVLPN-NYNPPKYL--------CWD--VLCTDPPV------VDNPRS 284
Cdd:cd10811   151 DYDLKAAMQKAKGLQFVWRGSPSLS-ESQEIFTHVMDQySYCTPSYIpfsnrsgfYWNgvAVFPDPPKdgiypnMSLPVT 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  285 PE---FNAKTLVNYFLKLASsqkgFYRTNHTVMTMGSDFHYENANMWFKNMDKLIRLVNaQQVNGSLVHVLYSTPTCYLW 361
Cdd:cd10811   230 TQnihQYAETMVANIKQRAA----WFRTPHVLWPWGCDKQFFNASVQFSNMDPLLDYIN-QHSSEFGVTVQYATLGDYFQ 304
                         330       340
                  ....*....|....*....|.
gi 113195690  362 ELNKANLTWTVK-EDDFFPYA 381
Cdd:cd10811   305 ALHNSNLTWEVRgSQDFLPYS 325
GH38N_Man2A1 cd11666
N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside ...
63-392 8.02e-53

N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38); This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212131 [Multi-domain]  Cd Length: 344  Bit Score: 188.63  E-value: 8.02e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   63 LNVHLLPHTHDDVGWLKTVDQYYygilsdvqHASVQYILDSVVSSLLEKPTRRFIYVEMAFFSRWWKQQTSATQDAVRNL 142
Cdd:cd11666     2 LQVFVVPHSHNDPGWLKTFDDYF--------RDQTQHILNNMVLKLKEDSRRKFIWSEISYFAKWWDIIDGQKKDAVKRL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  143 VRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDglPRVAWHIDPFGHSREQASLFAQMGFDGFFLGRID 222
Cdd:cd11666    74 IENGQLEIVTGGWVMPDEATAHYFALIDQLIEGHQWLERNLGVK--PKSGWAVDPFGHSPTMAYLLKRAGLSNMLIQRVH 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  223 YQDKLNRKKKLRMEELWRASDSLEPPAADL------FTGVLPNNYNP-PKYLC---------------WDVlctdPPVVD 280
Cdd:cd11666   152 YSVKKHFSLQKTLEFFWRQNWDLGSSTDILchmmpfYSYDVPHTCGPdPKICCqfdfkrlpggriscpWRV----PPEAI 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  281 NPRSPEFNAKTLVNYFLKlassQKGFYRTNHTVMTMGSDFHYENANMW---FKNMDKLIRLVNAQQvnGSLVHVLYSTPT 357
Cdd:cd11666   228 HPGNVQSRAQMLLDQYRK----KSKLFRTKVLLAPLGDDFRYTEYTEWdqqFENYQKLFDYMNSHP--ELHVKAQFGTLS 301
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 113195690  358 CYLWELNKA--------NLTWTVKEDDFFPYADGPHMFWTGYF 392
Cdd:cd11666   302 DYFDALRKStgmdpvggQSAFPVLSGDFFTYADRDDHYWSGYF 344
Alpha-mann_mid pfam09261
Alpha mannosidase middle domain; Members of this family adopt a structure consisting of three ...
387-483 2.64e-27

Alpha mannosidase middle domain; Members of this family adopt a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. They are predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 462728 [Multi-domain]  Cd Length: 98  Bit Score: 106.58  E-value: 2.64e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   387 FWTGYFSSRPALKRYERLSYNFLQVCNQLEALVGPEANVGPYGSGDSAPLQEAMAVLQHHDAVSGTARQNVVNDYARQLA 466
Cdd:pfam09261    2 YHRGTYTSRADLKRLNRKLEHLLRAAEQLSSLAALSLLGYEYPKEELEELWKALLLNQFHDILPGSSIQEVYRDAEARLA 81
                           90
                   ....*....|....*..
gi 113195690   467 AGWGPCEVLVSNALARL 483
Cdd:pfam09261   82 EALKETEKLLEDALRLL 98
Alpha-mann_mid smart00872
Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase ...
387-465 2.30e-25

Alpha mannosidase, middle domain; Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase.


Pssm-ID: 214875 [Multi-domain]  Cd Length: 79  Bit Score: 100.32  E-value: 2.30e-25
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 113195690    387 FWTGYFSSRPALKRYERLSYNFLQVCNQLEALVGPEANVGPYGSGDSAPLQEAMAVLQHHDAVSGTARQNVVNDYARQL 465
Cdd:smart00872    1 YHRGTYTSRPYLKRLNRRAESLLRAAEELAALAALLSLGYKYPSEQLEELWKALLLNQHHDAITGTSIDEVYDDYEKRL 79
GH38N_AMII_ER_cytosolic cd10789
N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; ...
65-226 2.64e-11

N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38); The subfamily is represented by Saccharomyces cerevisiae vacuolar alpha-mannosidase Ams1, rat ER/cytosolic alpha-mannosidase Man2C1, and similar proteins. Members in this family share high sequence similarity. None of them have any classical signal sequence or membrane spanning domains, which are typical of sorting or targeting signals. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 utilizes both the cytoplasm to vacuole targeting (Cvt, nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Man2C1is involved in oligosaccharide catabolism in both the ER and cytosol. It can catalyze the cobalt-dependent cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl-enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212101 [Multi-domain]  Cd Length: 252  Bit Score: 64.83  E-value: 2.64e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   65 VHLLPHTHDDVGWLKTVDQyyygilsdvqhaSVQYILDSVVS--SLLEK-PTRRFIYVEMAFFsRWWKQQTSATQDAVRN 141
Cdd:cd10789     2 IYAVGHAHIDLAWLWPVRE------------TRRKAARTFSTvlDLMEEyPDFVFTQSQAQLY-EWLEEDYPELFERIKE 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  142 LVRQGRLEFVNGGWVMND------EaathygAIVDQMTLGLRFLQDTFGSDglPRVAWHIDPFGHSREQASLFAQMGFDG 215
Cdd:cd10789    69 RVKEGRWEPVGGMWVEPDcnlpsgE------SLVRQFLYGQRYFREEFGVE--SRILWLPDSFGFSAALPQILKKSGIDY 140
                         170
                  ....*....|.
gi 113195690  216 FFLGRIDYQDK 226
Cdd:cd10789   141 FVTQKLSWNDT 151
GH38N_AMII_SpGH38_like cd10814
N-terminal catalytic domain of SPGH38, a putative alpha-mannosidase of Streptococcus pyogenes, ...
65-355 3.74e-05

N-terminal catalytic domain of SPGH38, a putative alpha-mannosidase of Streptococcus pyogenes, and its prokaryotic homologs; glycoside hydrolase family 38 (GH38); The subfamily is represented by SpGH38 of Streptococcus pyogenes, which has been assigned as a putative alpha-mannosidase, and is encoded by ORF spy1604. SpGH38 appears to exist as an elongated dimer and display alpha-1,3 mannosidase activity. It is active on disaccharides and some aryl glycosides. SpGH38 can also effectively deglycosylate human N-glycans in vitro. A divalent metal ion, such as a zinc ion, is required for its activity. SpGH38 is inhibited by swainsonine. The absence of any secretion signal peptide suggests that SpGH38 may be intracellular.


Pssm-ID: 212125 [Multi-domain]  Cd Length: 271  Bit Score: 46.48  E-value: 3.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   65 VHLLPHTHDDVGWLKTVDQYyygilsdvqHASVQYILDSVVSSLLEKPTrrfiyvemaFFSRWWKQQTSATQD------- 137
Cdd:cd10814     2 VHIISHTHWDREWYLPFEEF---------RMRLIDLIDRLLELLEEDPE---------FKSFHLDGQTIVLEDylevrpe 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  138 ---AVRNLVRQGRLEFvnGGW-VMNDEAATHYGAIVDQMTLGLRFLQdTFGSDglPRVAWHIDPFGHSREQASLFAQMGF 213
Cdd:cd10814    64 kreRLKKLIREGKLVI--GPWyVLQDEFLTSGEANIRNLLIGKKVAE-EFGKS--MKIGYFPDTFGHIGQMPQILKGFGI 138
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  214 DGFFLGRiDYQDKLNRKKklrmEELWRASDSleppaADLFTGVLPNNYNPPkylcwdvlcTDPPVvdnprsPEFNAKTLV 293
Cdd:cd10814   139 DNAVFGR-GVKPTESQYS----EFWWESPDG-----SRVLGILLANWYSNG---------NEIPV------DEEEAKEFW 193
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 113195690  294 NYFLKLASSqkgFYRTNHTVMTMGSDFHYENanmwfKNMDKLIRLVNAQQVNGSLVHVLYST 355
Cdd:cd10814   194 DKKLADAER---YASTDHLLLMNGCDHQPVQ-----PDLTKAIREANELYPDYEFIHSNFDE 247
GH38N_AMII_ScAms1_like cd10812
N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; ...
64-217 7.73e-05

N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38); The family is represented by Saccharomyces cerevisiae alpha-mannosidase (Ams1) and its eukaryotic homologs. Ams1 functions as a second resident vacuolar hydrolase in S. cerevisiae. It aids in recycling macromolecular components of the cell through hydrolysis of terminal, non-reducing alpha-d-mannose residues. Ams1 forms an oligomer in the cytoplasm and retains its oligomeric form during the import process. It utilizes both the Cvt (nutrient-rich conditions) and autophagic (starvation conditions) pathways for biosynthetic delivery to the vacuole. Mutants in either pathway are defective in Ams1 import. Members in this family show high sequence similarity with rat ER/cytosolic alpha-mannosidase Man2C1.


Pssm-ID: 212123 [Multi-domain]  Cd Length: 258  Bit Score: 45.51  E-value: 7.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   64 NVHLLPHTHDDVGWLKTVDqyyygilsdvqhASVQYILDSVVS--SLLEK-PTRRFIYVEMAFFsRWWKQQTSATQDAVR 140
Cdd:cd10812     1 NVYGIGNCHIDTAWLWPFS------------ETQQKVARSWSTqcDLMDRyPEYRFVASQAQQF-KWLETLYPDLFEKVK 67
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 113195690  141 NLVRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSDGlpRVAWHIDPFGHSREQASLFAQMGFDGFF 217
Cdd:cd10812    68 EYVKQGRFHPIGGSWVENDTNMPSGESLARQFLYGQRYFESRFGKRC--DTFWLPDTFGYSSQIPQLCRLAGMDYFF 142
GH38-57_N_LamB_YdjC_SF cd10785
Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein ...
67-229 3.51e-03

Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins; The superfamily possesses strong sequence similarities across a wide range of all three kingdoms of life. It mainly includes four families, glycoside hydrolases family 38 (GH38), heat stable retaining glycoside hydrolases family 57 (GH57), lactam utilization protein LamB/YcsF family, and YdjC-family. The GH38 family corresponds to class II alpha-mannosidases (alphaMII, EC 3.2.1.24), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides by employing a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. GH57 is a purely prokaryotic family with the majority of thermostable enzymes from extremophiles (many of them are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57 cleaves alpha-glycosidic bond by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation. Although the exact molecular function of LamB/YcsF family and YdjC-family remains unclear, they show high sequence and structure homology to the members of GH38 and GH57. Their catalytic domains adopt a similar parallel 7-stranded beta/alpha barrel, which is remotely related to catalytic NodB homology domain of the carbohydrate esterase 4 superfamily.


Pssm-ID: 212097 [Multi-domain]  Cd Length: 203  Bit Score: 39.93  E-value: 3.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   67 LLPHTHDDVGWLKTVDQYYYGILSDVQHASVQYILDSVVSSllekptrrFIYVEMAFFSRWWKQQTSATQDAVRNLVRQG 146
Cdd:cd10785     2 INAHSHNPYVWIQTFEEWYFEATKATYIPLLMHFHRNFEMS--------FNIAPISYEALFYHDLGENIKLQMKSIQKNG 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  147 RLEFVNGGWVMND--EAATHYGAIVDQMTLGLRFLQDTFGsdGLPRVAWHIDPFGHSREQAS-----LFAQMGFDGFFLG 219
Cdd:cd10785    74 QLEIGTHGATHPDesEAQSHPENVYAQITEGITWLEKHMG--VTPRHIWLHECFYNQAKQLSqgipyILQKSGFLYLFVQ 151
                         170
                  ....*....|..
gi 113195690  220 R--IDYQDKLNR 229
Cdd:cd10785   152 SrsISVKKELAL 163
GH38N_AMII_Man2C1 cd10813
N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar ...
65-216 3.68e-03

N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38); The subfamily corresponds to cytosolic alpha-mannosidase Man2C1 (also known as ER-mannosidase II or neutral/cytosolic mannosidase), mainly found in various vertebrates, and similar proteins. Man2C1 plays an essential role in the catabolism of cytosolic free oligomannosides derived from dolichol intermediates and the degradation of newly synthesized glycoproteins in ER or cytosol. It can catalyze the cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked mannose residues. Man2C1 is a cobalt-dependent enzyme belonging to alpha-mannosidase class II. It has a neutral pH optimum and is strongly inhitibed by furanose analogs swainsonine (SW) and 1,4-dideoxy-1,4-imino-D-mannitol (DIM), moderately by deoxymannojirimycin (DMM), but not by kifunensine (KIF). DMM and KIF, both pyranose analogs, are normally known to inhibit class I alpha-mannosidase.


Pssm-ID: 212124 [Multi-domain]  Cd Length: 252  Bit Score: 40.45  E-value: 3.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   65 VHLLPHTHDDVGWLKTVDQyyygilsdvqhaSVQYILDSVVS--SLLEKptrrfiYVEMAF-FS-----RWWKQQTSATQ 136
Cdd:cd10813     2 IHAMGHCHIDSAWLWPYEE------------TIRKCARSWVTvlRLMED------YPDFTFaCSqaqqlEWVKSWYPGLY 63
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  137 DAVRNLVRQGRLEFVNGGWVMNDEAATHYGAIVDQMTLGLRFLQDTFGSdgLPRVAWHIDPFGHSREQASLFAQMGFDGF 216
Cdd:cd10813    64 EEIQERVKNGRFIPVGGTWVEMDGNLPSGESMVRQFLYGQRFFKEEFGI--TCKEFWLPDTFGYSAQLPQIMKGCGISRF 141
GH38N_AMII_like_1 cd10791
N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to ...
65-220 4.77e-03

N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38); The subfamily of mainly uncharacterized eukaryotic proteins shows sequence homology with class II alpha-mannosidases (AlphaAMIIs). AlphaAMIIs possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyze the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. This subfamily belongs to the GH38 family of retaining glycosyl hydrolases, which employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.


Pssm-ID: 212103 [Multi-domain]  Cd Length: 254  Bit Score: 39.99  E-value: 4.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690   65 VHLLPHTHDDVGWLKTVDQyyygiLSDVQHASVQYILDsvvssLLEK-----PTRRFIY-VEMAF-FSRWWKQQTSATQD 137
Cdd:cd10791     2 VHVVHHSHTDIGYTDLQEK-----VDRYHVDYIPQALD-----LAEAtknypEDARFRWtTESTWlVEEYLKCASPEQRE 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 113195690  138 AVRNLVRQGRLEfVNGG-WVMNDEAATHygAIVDQMTLGLRFLQDTFGSDglPRVAWHIDPFGHSREQASLFAQMGFDGF 216
Cdd:cd10791    72 RLEQAVRRGRIG-WHALpLNITTELMDE--ELLRRGLYLSKELDRRFGLP--IIVAMQTDVPGHTWGLVDVLADAGIKYL 146

                  ....
gi 113195690  217 FLGR 220
Cdd:cd10791   147 SIGV 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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