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Conserved domains on  [gi|197313748|ref|NP_054878|]
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histone-lysine N-methyltransferase SETD2 isoform 1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SET_SETD2 cd19172
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and ...
 1549-1690 1.15e-100

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins; SETD2 (also termed HIF-1, huntingtin yeast partner B, huntingtin-interacting protein 1 (HIP-1), huntingtin-interacting protein B, lysine N-methyltransferase 3A or protein-lysine N-methyltransferase SETD2) acts as histone-lysine N-methyltransferase that specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. It has been shown that methylation is a posttranslational modification of dynamic microtubules and that SETD2 methylates alpha-tubulin at lysine 40, the same lysine that is marked by acetylation on microtubules. Methylation of microtubules occurs during mitosis and cytokinesis and can be ablated by SETD2 deletion, which causes mitotic spindle and cytokinesis defects, micronuclei, and polyploidy.


:

Pssm-ID: 380949 [Multi-domain]  Cd Length: 142  Bit Score: 319.14  E-value: 1.15e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1549 HADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMN 1628
Cdd:cd19172     1 YAKVEVFRTEKKGWGLRAAEDLPKGTFVIEYVGEVLDEKEFKRRMKEYAREGNRHYYFMALKSDEIIDATKKGNLSRFIN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197313748 1629 HSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLG 1690
Cdd:cd19172    81 HSCEPNCETQKWTVNGELRVGFFAKRDIPAGEELTFDYQFERYGKEAQKCYCGSPNCRGYIG 142
SRI pfam08236
SRI (Set2 Rpb1 interacting) domain; The SRI (Set2 Rpb1 interacting) domain mediates RNA ...
 2467-2555 1.54e-29

SRI (Set2 Rpb1 interacting) domain; The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilizes the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.


:

Pssm-ID: 462404  Cd Length: 83  Bit Score: 113.37  E-value: 1.54e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748  2467 AKKSKEVFRKEMSQFIVQCLNPYRKPdCKvgrittTEDFKHLARKLTHGVMNKELKYCKNPEDLEC-NENVKHKTKEYIK 2545
Cdd:pfam08236    1 EEKQEKKFEKTLAPHVVNVLNKYRKK-LG------KEDFKRLAKELTKILVAKELKKCPNRDPPEElSEKKKKKVKEFVK 73

                           90
                   ....*....|
gi 197313748  2546 KYMQKFGAVY 2555
Cdd:pfam08236   74 DYMEKFGAKY 83
AWS smart00570
associated with SET domains; subdomain of PRESET
 1495-1549 4.46e-20

associated with SET domains; subdomain of PRESET


:

Pssm-ID: 197795  Cd Length: 50  Bit Score: 85.53  E-value: 4.46e-20
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 197313748   1495 KRMQCECTPLSKDEraqgeIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQH 1549
Cdd:smart00570    1 DIMTCECKPTDDDE-----TACGSDCLNRMLFIECSSSCPCGSYCSNQRFQKRQY 50
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 2391-2420 9.83e-12

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


:

Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 61.37  E-value: 9.83e-12
                           10        20        30
                   ....*....|....*....|....*....|
gi 197313748  2391 LPPNWKTARDPEGKIYYYHVITRQTQWDPP 2420
Cdd:pfam00397    1 LPPGWEERWDPDGRVYYYNHETGETQWEKP 30
 
Name Accession Description Interval E-value
SET_SETD2 cd19172
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and ...
 1549-1690 1.15e-100

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins; SETD2 (also termed HIF-1, huntingtin yeast partner B, huntingtin-interacting protein 1 (HIP-1), huntingtin-interacting protein B, lysine N-methyltransferase 3A or protein-lysine N-methyltransferase SETD2) acts as histone-lysine N-methyltransferase that specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. It has been shown that methylation is a posttranslational modification of dynamic microtubules and that SETD2 methylates alpha-tubulin at lysine 40, the same lysine that is marked by acetylation on microtubules. Methylation of microtubules occurs during mitosis and cytokinesis and can be ablated by SETD2 deletion, which causes mitotic spindle and cytokinesis defects, micronuclei, and polyploidy.


Pssm-ID: 380949 [Multi-domain]  Cd Length: 142  Bit Score: 319.14  E-value: 1.15e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1549 HADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMN 1628
Cdd:cd19172     1 YAKVEVFRTEKKGWGLRAAEDLPKGTFVIEYVGEVLDEKEFKRRMKEYAREGNRHYYFMALKSDEIIDATKKGNLSRFIN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197313748 1629 HSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLG 1690
Cdd:cd19172    81 HSCEPNCETQKWTVNGELRVGFFAKRDIPAGEELTFDYQFERYGKEAQKCYCGSPNCRGYIG 142
SET smart00317
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...
 1550-1673 6.38e-42

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues


Pssm-ID: 214614 [Multi-domain]  Cd Length: 124  Bit Score: 150.56  E-value: 6.38e-42
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748   1550 ADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNH 1629
Cdd:smart00317    1 NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDIDSDLCIDARRKGNLARFINH 80

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....
gi 197313748   1630 SCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGK 1673
Cdd:smart00317   81 SCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSDYANE 124
SRI pfam08236
SRI (Set2 Rpb1 interacting) domain; The SRI (Set2 Rpb1 interacting) domain mediates RNA ...
 2467-2555 1.54e-29

SRI (Set2 Rpb1 interacting) domain; The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilizes the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.


Pssm-ID: 462404  Cd Length: 83  Bit Score: 113.37  E-value: 1.54e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748  2467 AKKSKEVFRKEMSQFIVQCLNPYRKPdCKvgrittTEDFKHLARKLTHGVMNKELKYCKNPEDLEC-NENVKHKTKEYIK 2545
Cdd:pfam08236    1 EEKQEKKFEKTLAPHVVNVLNKYRKK-LG------KEDFKRLAKELTKILVAKELKKCPNRDPPEElSEKKKKKVKEFVK 73

                           90
                   ....*....|
gi 197313748  2546 KYMQKFGAVY 2555
Cdd:pfam08236   74 DYMEKFGAKY 83
SET pfam00856
SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...
 1561-1666 2.67e-27

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.


Pssm-ID: 459965 [Multi-domain]  Cd Length: 115  Bit Score: 108.38  E-value: 2.67e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748  1561 GWGLRAAKDLPSNTFVLEYCGE-VLDHKEFKARVKEYARNKNI---HYYFMALKNDE--IIDAT--QKGNCSRFMNHSCE 1632
Cdd:pfam00856    1 GRGLFATEDIPKGEFIGEYVEVlLITKEEADKRELLYYDKLELrlwGPYLFTLDEDSeyCIDARalYYGNWARFINHSCD 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 197313748  1633 PNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:pfam00856   81 PNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY 114
SET COG2940
SET domain-containing protein (function unknown) [General function prediction only];
1548-1687 9.96e-27

SET domain-containing protein (function unknown) [General function prediction only];


Pssm-ID: 442183 [Multi-domain]  Cd Length: 134  Bit Score: 107.35  E-value: 9.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1548 QHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARvkeYARNKNIHYYFMALKNDEIIDATQKGNCSRFM 1627
Cdd:COG2940     4 LHPRIEVRPSPIHGRGVFATRDIPKGTLIGEYPGEVITWAEAERR---EPHKEPLHTYLFELDDDGVIDGALGGNPARFI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1628 NHSCEPNCEtqkwTVNGQLRVGFFTTKLVPSGSELTFDYQFQrYGKEAQKCFCgsANCRG 1687
Cdd:COG2940    81 NHSCDPNCE----ADEEDGRIFIVALRDIAAGEELTYDYGLD-YDEEEYPCRC--PNCRG 133
AWS smart00570
associated with SET domains; subdomain of PRESET
 1495-1549 4.46e-20

associated with SET domains; subdomain of PRESET


Pssm-ID: 197795  Cd Length: 50  Bit Score: 85.53  E-value: 4.46e-20
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 197313748   1495 KRMQCECTPLSKDEraqgeIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQH 1549
Cdd:smart00570    1 DIMTCECKPTDDDE-----TACGSDCLNRMLFIECSSSCPCGSYCSNQRFQKRQY 50
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 2391-2420 9.83e-12

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 61.37  E-value: 9.83e-12
                           10        20        30
                   ....*....|....*....|....*....|
gi 197313748  2391 LPPNWKTARDPEGKIYYYHVITRQTQWDPP 2420
Cdd:pfam00397    1 LPPGWEERWDPDGRVYYYNHETGETQWEKP 30
AWS pfam17907
AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc ...
 1515-1547 5.37e-10

AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET domain.


Pssm-ID: 465559  Cd Length: 39  Bit Score: 56.67  E-value: 5.37e-10
                           10        20        30
                   ....*....|....*....|....*....|....
gi 197313748  1515 ACGEDCLNRLLMIECSSR-CPNGDYCSNRRFQRK 1547
Cdd:pfam17907    6 GCGSDCINRMLFVECTPKtCPCGESCQNQRFQRK 39
WW cd00201
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ...
 2392-2422 6.18e-10

Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.


Pssm-ID: 238122 [Multi-domain]  Cd Length: 31  Bit Score: 56.00  E-value: 6.18e-10
                          10        20        30
                  ....*....|....*....|....*....|.
gi 197313748 2392 PPNWKTARDPEGKIYYYHVITRQTQWDPPTW 2422
Cdd:cd00201     1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31
WW smart00456
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ...
 2391-2422 7.39e-10

Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.


Pssm-ID: 197736 [Multi-domain]  Cd Length: 33  Bit Score: 56.07  E-value: 7.39e-10
                            10        20        30
                    ....*....|....*....|....*....|..
gi 197313748   2391 LPPNWKTARDPEGKIYYYHVITRQTQWDPPTW 2422
Cdd:smart00456    2 LPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33
PRP40 COG5104
Splicing factor [RNA processing and modification];
2395-2436 7.98e-03

Splicing factor [RNA processing and modification];


Pssm-ID: 227435 [Multi-domain]  Cd Length: 590  Bit Score: 41.60  E-value: 7.98e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 197313748 2395 WKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAE 2436
Cdd:COG5104    58 WKECRTADGKVYYYNSITRESRWKIPPERKKVEPIAEQKHDE 99
 
Name Accession Description Interval E-value
SET_SETD2 cd19172
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and ...
 1549-1690 1.15e-100

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins; SETD2 (also termed HIF-1, huntingtin yeast partner B, huntingtin-interacting protein 1 (HIP-1), huntingtin-interacting protein B, lysine N-methyltransferase 3A or protein-lysine N-methyltransferase SETD2) acts as histone-lysine N-methyltransferase that specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. It has been shown that methylation is a posttranslational modification of dynamic microtubules and that SETD2 methylates alpha-tubulin at lysine 40, the same lysine that is marked by acetylation on microtubules. Methylation of microtubules occurs during mitosis and cytokinesis and can be ablated by SETD2 deletion, which causes mitotic spindle and cytokinesis defects, micronuclei, and polyploidy.


Pssm-ID: 380949 [Multi-domain]  Cd Length: 142  Bit Score: 319.14  E-value: 1.15e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1549 HADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMN 1628
Cdd:cd19172     1 YAKVEVFRTEKKGWGLRAAEDLPKGTFVIEYVGEVLDEKEFKRRMKEYAREGNRHYYFMALKSDEIIDATKKGNLSRFIN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197313748 1629 HSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLG 1690
Cdd:cd19172    81 HSCEPNCETQKWTVNGELRVGFFAKRDIPAGEELTFDYQFERYGKEAQKCYCGSPNCRGYIG 142
SET_SETD2-like cd10531
SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), ...
 1551-1686 9.38e-71

SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins; This family includes SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2) and ASH1-like protein (ASH1L), which function as histone-lysine N-methyltransferases. SETD2 specifically trimethylates 'Lys-36' of histone H3 (H3K36me3) using demethylated 'Lys-36' (H3K36me2) as substrate. NSD2 shows histone H3 'Lys-27' (H3K27me) methyltransferase activity. ASH1L specifically methylates 'Lys-36' of histone H3 (H3K36me). The family also includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins.


Pssm-ID: 380929  Cd Length: 136  Bit Score: 233.30  E-value: 9.38e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1551 DVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHS 1630
Cdd:cd10531     1 KLELFRTEKKGWGVKAKEDIQKGEFIIEYVGEVIDKKEFKERLDEYEELGKSNFYILSLSDDVVIDATRKGNLSRFINHS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 197313748 1631 CEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCR 1686
Cdd:cd10531    81 CEPNCETQKWIVNGEYRIGIFALRDIPAGEELTFDYNFVNYNEAKQVCLCGAQNCR 136
SET_NSD cd19173
SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, ...
 1550-1690 1.74e-62

SET domain (including post-SET domain) found in nuclear SET domain-containing proteins, NSD1, NSD2, NSD3 and similar proteins; The nuclear receptor-binding SET Domain (NSD) family of histone H3 lysine 36 methyltransferases is comprised of NSD1, NSD2, and NSD3, which are primarily known to be involved in chromatin integrity and gene expression through mono-, di-, or tri-methylating lysine 36 of histone H3 (H3K36), respectively. NSD1 (EC 2.1.1.43; also termed histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B) or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-27' (H3K27me) methyltransferase activity. NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3.


Pssm-ID: 380950 [Multi-domain]  Cd Length: 142  Bit Score: 209.86  E-value: 1.74e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1550 ADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNH 1629
Cdd:cd19173     2 PPTEPFKTGDRGWGLRTKRDIKKGDFVIEYVGELIDEEECRRRLKKAHENNITNFYMLTLDKDRIIDAGPKGNLSRFMNH 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 197313748 1630 SCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLG 1690
Cdd:cd19173    82 SCQPNCETQKWTVNGDTRVGLFAVRDIPAGEELTFNYNLDCLGNEKKVCRCGAPNCSGFLG 142
SET_ASH1L cd19174
SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ...
 1551-1691 4.51e-56

SET domain (including post-SET domain) found in ASH1-like protein (ASH1L) and similar proteins; ASH1L (EC 2.1.1.43; also termed absent small and homeotic disks protein 1 homolog, KMT2H, or lysine N-methyltransferase 2H) acts as histone-lysine N-methyltransferase that specifically methylates 'Lys-36' of histone H3 (H3K36me). It plays important roles in development; heterozygous mutation of ASH1L is associated with severe intellectual disability (ID) and multiple congenital anomaly (MCA).


Pssm-ID: 380951 [Multi-domain]  Cd Length: 141  Bit Score: 191.74  E-value: 4.51e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1551 DVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKE-YARNKniHYYFMALKNDEIIDATQKGNCSRFMNH 1629
Cdd:cd19174     1 GLERFRTEDKGWGVRTKEPIKAGQFIIEYVGEVVSEQEFRRRMIEqYHNHS--HHYCLNLDSGMVIDGYRMGNEARFVNH 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197313748 1630 SCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYG-KEAQKCFCGSANCRGYLGG 1691
Cdd:cd19174    79 SCDPNCEMQKWSVNGVYRIGLFALKDIPAGEELTYDYNFHSFNvEKQQPCKCGSPNCRGVIGG 141
SET_ASHR3-like cd19175
SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 ...
 1552-1690 2.59e-52

SET domain (including post-SET domain) found in Arabidopsis thaliana ASH1-related protein 3 (ASHR3) and similar proteins; This family includes Arabidopsis thaliana ASH1-related protein 3 (ASHR3, also termed protein SET DOMAIN GROUP 4 or protein stamen loss), ASH1 homolog 3 (ASHH3, also termed protein SET DOMAIN GROUP 7) and homolog 4 (ASHH4, also termed protein SET DOMAIN GROUP 24). They all function as histone-lysine N-methyltransferases (EC 2.1.1.43).


Pssm-ID: 380952 [Multi-domain]  Cd Length: 139  Bit Score: 180.69  E-value: 2.59e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1552 VEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSC 1631
Cdd:cd19175     2 MKLVKTEKCGWGLVADEDINAGEFIIEYVGEVIDDKTCEERLWDMKHKGEKNFYMCEIDKDMVIDATFKGNLSRFINHSC 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 197313748 1632 EPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGkEAQKCFCGSANCRGYLG 1690
Cdd:cd19175    82 DPNCELQKWQVDGETRIGVFAIRDIKKGEELTYDYQFVQFG-ADQDCHCGSKNCRGKLG 139
SET_NSD3 cd19212
SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...
 1549-1690 2.10e-50

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 3 (NSD3) and similar proteins; NSD3 (EC 2.1.1.43; also termed protein whistle, WHSC1-like 1 isoform 9 with methyltransferase activity to lysine, Wolf-Hirschhorn syndrome candidate 1-like protein 1 (WHSC1L1), or WHSC1-like protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-4' and 'Lys-27' of histone H3. NSD3 is amplified and overexpressed in multiple cancer types, including acute myeloid leukemia (AML), breast, lung, pancreatic and bladder cancers, as well as squamous cell carcinoma of the head and neck (SCCHN). NSD3 contributes to tumorigenesis by interacting with bromodomain-containing protein 4 (BRD4), the bromodomain and extraterminal (BET) protein, which is a potential therapeutic target in acute myeloid leukemia (AML). NSD3 is amplified in primary tumors and cell lines from breast carcinoma, and can promote the cell viability of small-cell lung cancer and pancreatic ductal adenocarcinoma. High NSD3 expression is implicated in poor grade and heavy smoking history in SCCHN. Thus, NSD3 may serve as a potential druggable target for selective cancer therapy.


Pssm-ID: 380989 [Multi-domain]  Cd Length: 142  Bit Score: 175.50  E-value: 2.10e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1549 HADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMN 1628
Cdd:cd19212     1 YPDAEIIKTERRGWGLRTKRSIKKGEFVNEYVGELIDEEECRLRIKRAHENSVTNFYMLTVTKDRIIDAGPKGNYSRFMN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197313748 1629 HSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLG 1690
Cdd:cd19212    81 HSCNPNCETQKWTVNGDVRVGLFALCDIPAGMELTFNYNLDCLGNGRTECHCGADNCSGFLG 142
SET_NSD2 cd19211
SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) ...
 1549-1690 3.17e-50

SET domain (including post-SET domain) found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins; NSD2 (EC 2.1.1.43; also termed multiple myeloma SET domain-containing protein (MMSET), protein trithorax-5 (TRX5), or wolf-Hirschhorn syndrome candidate 1 protein (WHSC1)) acts as histone-lysine N-methyltransferase with histone H3 'Lys-36' (H3K36me) methyltransferase activity. NSD2 has been shown to mediate di- and trimethylation of H3K36 and dimethylation of H4K20 in different systems, and has been characterized as a transcriptional repressor interacting with histone deacetylase HDAC1 and histone demethylase LSD1. NSD2 mediates constitutive NF-kappaB signaling for cancer cell proliferation, survival and tumor growth. It is highly overexpressed in several types of human cancers, including small-cell lung cancers, neuroblastoma, carcinomas of stomach and colon, and bladder cancers, and its overexpression tends to be associated with tumor aggressiveness. WHSC1 is frequently deleted in Wolf-Hirschhorn syndrome (WHS).


Pssm-ID: 380988 [Multi-domain]  Cd Length: 142  Bit Score: 175.18  E-value: 3.17e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1549 HADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMN 1628
Cdd:cd19211     1 YPETKIIKTEGKGWGLIAKRDIKKGEFVNEYVGELIDEEECMARIKHAHENDITHFYMLTIDKDRIIDAGPKGNYSRFMN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 197313748 1629 HSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLG 1690
Cdd:cd19211    81 HSCQPNCETQKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTVCRCGAPNCSGFLG 142
SET_NSD1 cd19210
SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing ...
 1549-1690 1.50e-48

SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins; NSD1 (EC 2.1.1.43; also termed Histone-lysine N-methyltransferase H3 lysine-36 and H4 lysine-20 specific, androgen receptor coactivator 267 kDa protein (ARA267), androgen receptor-associated protein of 267 kDa, H3-K36-HMTase, H4-K20-HMTase, lysine N-methyltransferase 3B (KMT3B), or NR-binding SET domain-containing protein 1) functions as a histone-lysine N-methyltransferase that preferentially methylates 'Lys-36' of histone H3 and 'Lys-20' of histone H4. NSD1 is altered in approximately 10% of head and neck cancer patients with 55% decrease in risk of death in NSD1-mutated versus non-mutated patients; its disruption promotes favorable chemotherapeutic responses linked to hypomethylation.


Pssm-ID: 380987 [Multi-domain]  Cd Length: 142  Bit Score: 170.11  E-value: 1.50e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1549 HADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKeYARNKNI-HYYFMALKNDEIIDATQKGNCSRFM 1627
Cdd:cd19210     1 YPEVEIFRTLGRGWGLRCKTDIKKGEFVNEYVGELIDEEECRARIR-YAQEHDItNFYMLTLDKDRIIDAGPKGNYARFM 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 197313748 1628 NHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLG 1690
Cdd:cd19210    80 NHCCQPNCETQKWTVNGDTRVGLFALCDIKAGTELTFNYNLECLGNGKTVCKCGAPNCSGFLG 142
SET smart00317
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on ...
 1550-1673 6.38e-42

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain; Putative methyl transferase, based on outlier plant homologues


Pssm-ID: 214614 [Multi-domain]  Cd Length: 124  Bit Score: 150.56  E-value: 6.38e-42
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748   1550 ADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNH 1629
Cdd:smart00317    1 NKLEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERPKAYDTDGAKAFYLFDIDSDLCIDARRKGNLARFINH 80

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|....
gi 197313748   1630 SCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGK 1673
Cdd:smart00317   81 SCEPNCELLFVEVNGDDRIVIFALRDIKPGEELTIDYGSDYANE 124
SET_SUV39H cd10542
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 1528-1689 6.27e-40

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homologs, SUV39H1, SUV39H2 and similar proteins; This family includes SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. Also included are Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (SUV39H homolog) and Neurospora crassa DIM-5, both of which also methylate 'Lys-9' of histone H3.


Pssm-ID: 380940 [Multi-domain]  Cd Length: 245  Bit Score: 149.37  E-value: 6.27e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1528 ECSSRCPNGDYCSNRRFQRKQHADVEVILT-EKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKnIHYYF 1606
Cdd:cd10542    65 ECNSRCKCGPDCPNRVVQRGRKVPLCIFRTsNGRGWGVKTLEDIKKGTFVMEYVGEIITSEEAERRGKIYDANG-RTYLF 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1607 MALKNDEI----IDATQKGNCSRFMNHSCEPNCET-QKW--TVNGQL-RVGFFTTKLVPSGSELTFDYqfQRYGKEAQ-- 1676
Cdd:cd10542   144 DLDYNDDDceytVDAAYYGNISHFINHSCDPNLAVyAVWinHLDPRLpRIAFFAKRDIKAGEELTFDY--LMTGTGGSse 221

                         170       180
                  ....*....|....*....|....
gi 197313748 1677 -----------KCFCGSANCRGYL 1689
Cdd:cd10542   222 stipkpkdvrvPCLCGSKNCRKYL 245
SET_SETDB1 cd10517
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...
 1499-1689 2.00e-39

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and similar proteins; SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes.


Pssm-ID: 380915 [Multi-domain]  Cd Length: 288  Bit Score: 149.36  E-value: 2.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1499 CECTPLSKDERA---QGEIACGEDCLNRLLM-------IECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAK 1568
Cdd:cd10517    68 CACQQLTIEATAatpGGQINPSAGYQYRRLMeklptgvYECNSRCKCDKRCYNRVVQNGLQVRLQVFKTEKKGWGIRCLD 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1569 DLPSNTFVLEYCGEV--------------------LDHKEFKARVKE-YARNKNIHYYfmalkndeIIDATQKGNCSRFM 1627
Cdd:cd10517   148 DIPKGSFVCIYAGQIltedeaneeglqygdeyfaeLDYIEVVEKLKEgYESDVEEHCY--------IIDAKSEGNLGRYL 219

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197313748 1628 NHSCEPNCETQKWTVNGQ-LR---VGFFTTKLVPSGSELTFDYQF---QRYGKEaQKCFCGSANCRGYL 1689
Cdd:cd10517   220 NHSCSPNLFVQNVFVDTHdLRfpwVAFFASRYIRAGTELTWDYNYevgSVPGKV-LYCYCGSSNCRGRL 287
SET_SETMAR cd10544
SET domain (including pre-SET and post-SET domains) found in SET domain and mariner ...
 1527-1689 1.15e-37

SET domain (including pre-SET and post-SET domains) found in SET domain and mariner transposase fusion protein (SETMAR) and similar proteins; SETMAR (also termed metnase) is a DNA-binding protein that is indirectly recruited to sites of DNA damage through protein-protein interactions. It has a sequence-specific DNA-binding activity recognizing the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element and displays a DNA nicking and end joining activity. SETMAR also acts as a histone-lysine N-methyltransferase that methylates 'Lys-4' and 'Lys-36' of histone H3. It specifically mediates dimethylation of H3 'Lys-36' at sites of DNA double-strand break and may recruit proteins required for efficient DSB repair through non-homologous end-joining.


Pssm-ID: 380942 [Multi-domain]  Cd Length: 254  Bit Score: 143.21  E-value: 1.15e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1527 IECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNihYYF 1606
Cdd:cd10544    67 FECNSMCKCSESCQNRVVQNGLQFKLQVFKTPKKGWGLRTLEFIPKGRFVCEYAGEVIGFEEARRRTKSQTKGDM--NYI 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1607 MALK----NDEI----IDATQKGNCSRFMNHSCEPNCETQKWTVNGQL-RVGFFTTKLVPSGSELTFDY----------- 1666
Cdd:cd10544   145 IVLRehlsSGKVletfVDPTYIGNIGRFLNHSCEPNLFMVPVRVDSMVpKLALFAARDIVAGEELSFDYsgefsnsvesv 224

                         170       180
                  ....*....|....*....|....*
gi 197313748 1667 --QFQRYGKEAQKCFCGSANCRGYL 1689
Cdd:cd10544   225 tlARQDESKSRKPCLCGAENCRGFL 249
SET_SETD1-like cd10518
SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), ...
 1561-1686 4.78e-37

SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A), 1B (SETD1B), as well as histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B), 2C (KMT2C), 2D (KMT2D). These proteins are histone-lysine N-methyltransferases (EC 2.1.1.43) that specifically methylate 'Lys-4' of histone H3 (H3K4me).


Pssm-ID: 380916  Cd Length: 150  Bit Score: 137.73  E-value: 4.78e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1561 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKW 1640
Cdd:cd10518    25 GWGLFAKRPIAAGEMVIEYVGEVIRPIVADKREKRYDEEGGGGTYMFRIDEDLVIDATKKGNIARFINHSCDPNCYAKII 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 197313748 1641 TVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCR 1686
Cdd:cd10518   105 TVDGEKHIVIFAKRDIAPGEELTYDYKFPIEDEEKIPCLCGAPNCR 150
SET_SETDB-like cd10538
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) ...
 1497-1667 3.91e-36

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2, and similar proteins; The family includes SET domain bifurcated 1 (SETDB1) and 2 (SETDB2), suppressor of variegation 3-9 homologs, SUV39H1 and SUV39H2, euchromatic histone-lysine N-methyltransferase EHMT1 and EHMT2. SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis. SUV39H1 (also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A, KMT1A, position-effect variegation 3-9 homolog, SUV39H, or Su(var)3-9 homolog 1) and SUV39H2 (also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B, KMT1B, or Su(var)3-9 homolog 2), both act as histone-lysine N-methyltransferases that specifically trimethylate 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. They mainly function in heterochromatin regions, thereby playing central roles in the establishment of constitutive heterochromatin at pericentric and telomere regions. EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin. This family also includes the pre-SET domain, which is found in a number of histone methyltransferases (HMTase), N-terminal to the SET domain. Pre-SET domain is a zinc binding motif which contains 9 conserved cysteines that coordinate three zinc ions. It is thought that this region plays a structural role in stabilizing SET domains. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380936 [Multi-domain]  Cd Length: 217  Bit Score: 137.50  E-value: 3.91e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1497 MQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFV 1576
Cdd:cd10538    36 SKCACAAESDGIFAYTKNGLLRLNNSPPPIFECNSKCSCDDDCKNRVVQRGLQARLQVFRTSKKGWGVRSLEFIPKGSFV 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1577 LEYCGEVLDHKEFKARVKEYARNKniHYYFMALKNDE---------IIDATQKGNCSRFMNHSCEPNCETQKWTVNGQL- 1646
Cdd:cd10538   116 CEYVGEVITTSEADRRGKIYDKSG--GSYLFDLDEFSdsdgdgeelCVDATFCGNVSRFINHSCDPNLFPFNVVIDHDDl 193

                         170       180
                  ....*....|....*....|....
gi 197313748 1647 ---RVGFFTTKLVPSGSELTFDYQ 1667
Cdd:cd10538   194 rypRIALFATRDILPGEELTFDYG 217
SET_SUV39H_Clr4-like cd20073
SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 ...
 1498-1689 1.45e-29

SET domain (including pre-SET and post-SET domains) found in of Schizosaccharomyces pombe H3K9 methyltransferase Clr4, and similar proteins; This subfamily contains fission yeast Schizosaccharomyces pombe H3K9 methyltransferase Clr4 (also known as Suv39h), the sole homolog of the mammalian SUV39H1 and SUV39H2 enzymes, that has a critical role in preventing aberrant heterochromatin formation. It is known to di- and tri-methylate Lys-9 of histone H3, a central heterochromatic histone modification, with its specificity profile most similar to that of the human SUV39H2 homolog.


Pssm-ID: 380999 [Multi-domain]  Cd Length: 259  Bit Score: 119.98  E-value: 1.45e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1498 QCEC------TPLSKDEraQGEIACGEDCLnrllMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLP 1571
Cdd:cd20073    41 SCQCledsneKSFAYDE--YGRVRANTGSI----IYECNENCDCGINCPNRVVQRGRKLPLEIFKTKHKGWGLRCPRFIK 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1572 SNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEI-----IDATQKGNCSRFMNHSCEPNCETQKWTVN-GQ 1645
Cdd:cd20073   115 AGTFIGVYLGEVITQSEAEIRGKKYDNVGVTYLFDLDLFEDQVdeyytVDAQYCGDVTRFINHSCDPNLAIYSVLRDkSD 194

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 197313748 1646 LRV---GFFTTKLVPSGSELTFDY---------QFQRYGKEAQ--------KCFCGSANCRGYL 1689
Cdd:cd20073   195 SKIydlAFFAIKDIPALEELTFDYsgrnnfdqlGFIGNRSNSKyinlknkrPCYCGSANCRGWL 258
SET_KMT2A_2B cd19170
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), ...
 1561-1689 1.54e-29

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B) and similar proteins; This family includes KMT2A and KMT2B. Both KMT2A (also termed ALL-1 or CXXC7 or MLL or MLL1 or TRX1 or HRX) and KMT2B (also termed MLL4 or TRX2) act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me).


Pssm-ID: 380947 [Multi-domain]  Cd Length: 152  Bit Score: 116.34  E-value: 1.54e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1561 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYaRNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKW 1640
Cdd:cd19170    25 GRGLFCKRNIDAGEMVIEYAGEVIRSVLTDKREKYY-ESKGIGCYMFRIDDDEVVDATMHGNAARFINHSCEPNCYSRVV 103

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 197313748 1641 TVNGQLRVGFFTTKLVPSGSELTFDYQFQrygKEAQK--CFCGSANCRGYL 1689
Cdd:cd19170   104 NIDGKKHIVIFALRRILRGEELTYDYKFP---IEDVKipCTCGSKKCRKYL 151
SRI pfam08236
SRI (Set2 Rpb1 interacting) domain; The SRI (Set2 Rpb1 interacting) domain mediates RNA ...
 2467-2555 1.54e-29

SRI (Set2 Rpb1 interacting) domain; The SRI (Set2 Rpb1 interacting) domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. This domain is conserved from yeast to humans. Members of this family form a compact, closed three-helix bundle, with an up-down-up topology. The first and second helices are antiparallel to each other and are of similar length; the third helix, which is packed across helices alpha1 and alpha2 is slightly shorter, consisting of only 15 amino acids. Most conserved hydrophobic residues are largely buried in the interior of the structure and form an extensive and contiguous hydrophobic core that stabilizes the packing of the three-helix bundle. This domain mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation.


Pssm-ID: 462404  Cd Length: 83  Bit Score: 113.37  E-value: 1.54e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748  2467 AKKSKEVFRKEMSQFIVQCLNPYRKPdCKvgrittTEDFKHLARKLTHGVMNKELKYCKNPEDLEC-NENVKHKTKEYIK 2545
Cdd:pfam08236    1 EEKQEKKFEKTLAPHVVNVLNKYRKK-LG------KEDFKRLAKELTKILVAKELKKCPNRDPPEElSEKKKKKVKEFVK 73

                           90
                   ....*....|
gi 197313748  2546 KYMQKFGAVY 2555
Cdd:pfam08236   74 DYMEKFGAKY 83
SET_SET1 cd20072
SET domain (including post-SET domain) found in catalytic component of the Saccharomyces ...
 1562-1686 8.10e-29

SET domain (including post-SET domain) found in catalytic component of the Saccharomyces cerevisiae COMPASS complex and similar proteins; The family contains mostly fungal SET domains, including SET1 found in the catalytic component of the Saccharomyces cerevisiae COMPASS (complex of proteins associated with Set1). SET1 is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex. The activity of this catalytic domain is established through forming a complex with a set of core proteins; it is extensively contacted by Cps60 (Bre2), Cps50 (Swd1), and Cps30 (Swd3).


Pssm-ID: 380998  Cd Length: 148  Bit Score: 114.06  E-value: 8.10e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1562 WGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWT 1641
Cdd:cd20072    25 WGLYAMENISAKDMVIEYVGEVIRQQVADEREKRYLRQGIGSSYLFRIDDDTVVDATKKGNIARFINHCCDPNCTAKIIK 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 197313748 1642 VNGQLRVGFFTTKLVPSGSELTFDYQFQRyGKEAQKCFCGSANCR 1686
Cdd:cd20072   105 VEGEKRIVIYAKRDIAAGEELTYDYKFPR-EEDKIPCLCGAPNCR 148
SET_KMT2C_2D cd19171
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), ...
 1560-1689 8.85e-28

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C), 2D (KMT2D) and similar proteins; This family includes KMT2C and KMT2D. Both, KMT2C (also termed HALR or MLL3) and KMT2D (also termed ALR or MLL2), act as histone methyltransferases that methylate 'Lys-4' of histone H3 (H3K4me). They are subunits of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.


Pssm-ID: 380948 [Multi-domain]  Cd Length: 153  Bit Score: 111.37  E-value: 8.85e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1560 KGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEY-ARNKNIhyYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQ 1638
Cdd:cd19171    24 QGLGLYAARDIEKHTMVIEYIGEIIRNEVANRREKIYeSQNRGI--YMFRIDNDWVIDATMTGGPARYINHSCNPNCVAE 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 197313748 1639 KWTVNGQLRVGFFTTKLVPSGSELTFDYQFQrYGKEAQK--CFCGSANCRGYL 1689
Cdd:cd19171   102 VVTFDKEKKIIIISNRRIAKGEELTYDYKFD-FEDDQHKipCLCGAPNCRKWM 153
SET_EZH cd10519
SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar ...
 1561-1668 1.28e-27

SET domain found in enhancer of zeste homolog 1 (EZH1), zeste homolog 2 (EZH2) and similar proteins; The family includes EZH1 and EZH2. EZH1 (EC 2.1.1.43; also termed ENX-2, or histone-lysine N-methyltransferase EZH1) is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. EZH2 (EC 2.1.1.43; also termed lysine N-methyltransferase 6, ENX-1, or histone-lysine N-methyltransferase EZH2) is a catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Both, EZH1 and EZH2, can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.


Pssm-ID: 380917  Cd Length: 117  Bit Score: 109.26  E-value: 1.28e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1561 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNkNIHYYFmALKNDEIIDATQKGNCSRFMNHSCEPNCETQKW 1640
Cdd:cd10519    12 GWGLFLKEPIKKDEFIGEYTGELISQDEADRRGKIYDKY-NSSYLF-NLNDQFVVDATRKGNKIRFANHSSNPNCYAKVM 89

                          90       100
                  ....*....|....*....|....*...
gi 197313748 1641 TVNGQLRVGFFTTKLVPSGSELTFDYQF 1668
Cdd:cd10519    90 MVNGDHRIGIFAKRDIEAGEELFFDYGY 117
SET_EHMT cd10543
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 1525-1686 2.02e-27

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase EHMT1, EHMT2 and similar proteins; This family includes EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, lysine N-methyltransferase 1D, or KMT1D) and EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C, KMT1C, or protein G9a), both act as histone-lysine N-methyltransferases that specifically mono- and dimethylate 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380941 [Multi-domain]  Cd Length: 231  Bit Score: 112.82  E-value: 2.02e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1525 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEyarnkniHY 1604
Cdd:cd10543    66 LIFECNRACSCWRNCRNRVVQNGIRYRLQLFRTRGMGWGVRALQDIPKGTFVCEYIGELISDSEADSREDD-------SY 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1605 YF-MALKNDEI--IDATQKGNCSRFMNHSCEPNCETQKWTVNGQ----LRVGFFTTKLVPSGSELTFDYQfQRYGKEAQK 1677
Cdd:cd10543   139 LFdLDNKDGETycIDARRYGNISRFINHLCEPNLIPVRVFVEHQdlrfPRIAFFASRDIKAGEELGFDYG-EKFWRIKGK 217

                         170
                  ....*....|..
gi 197313748 1678 CF---CGSANCR 1686
Cdd:cd10543   218 YFtcrCGSPKCK 229
SET_SETDB cd10541
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), ...
 1470-1689 2.60e-27

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 1 (SETDB1), SET domain bifurcated 2 (SETDB2), and similar proteins; SETDB1 (EC 2.1.1.43; also termed ERG-associated protein with SET domain (ESET), histone H3-K9 methyltransferase 4, H3-K9-HMTase 4, or lysine N-methyltransferase 1E (KMT1E)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis.


Pssm-ID: 380939 [Multi-domain]  Cd Length: 236  Bit Score: 112.64  E-value: 2.60e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1470 PCYFDL-IEENVYLTERKKNKSHRDIKRMQC--------ECTPLSKD--------ERAQGEIACGedclnrllMIECSSR 1532
Cdd:cd10541     2 PFYYIPdISYGKFLVGCDCTDGCRDKSKCAChqltiqatACTPGGQDnptagyqyKRLEECLPTG--------VYECNKL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1533 CP-NGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLD----HKEFKARVKEYARNKNihyyfM 1607
Cdd:cd10541    74 CKcDPNMCQNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGTFVCIYAGKILTddfaDKEGLEMGDEYFANLD-----H 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1608 ALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLR----VGFFTTKLVPSGSELTFDYQFQRYGKEAQK--CFCG 1681
Cdd:cd10541   149 IEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLrfpwVAFFASKRIKAGTELTWDYNYEVGSVEGKEllCCCG 228


                  ....*...
gi 197313748 1682 SANCRGYL 1689
Cdd:cd10541   229 SNECRGRL 236
SET pfam00856
SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be ...
 1561-1666 2.67e-27

SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.


Pssm-ID: 459965 [Multi-domain]  Cd Length: 115  Bit Score: 108.38  E-value: 2.67e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748  1561 GWGLRAAKDLPSNTFVLEYCGE-VLDHKEFKARVKEYARNKNI---HYYFMALKNDE--IIDAT--QKGNCSRFMNHSCE 1632
Cdd:pfam00856    1 GRGLFATEDIPKGEFIGEYVEVlLITKEEADKRELLYYDKLELrlwGPYLFTLDEDSeyCIDARalYYGNWARFINHSCD 80

                           90       100       110
                   ....*....|....*....|....*....|....
gi 197313748  1633 PNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:pfam00856   81 PNCEVRVVYVNGGPRIVIFALRDIKPGEELTIDY 114
SET_SUV39H2 cd10532
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 1528-1689 3.52e-27

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 2 (SUV39H2) and similar proteins; SUV39H2 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 2, H3-K9-HMTase 2, lysine N-methyltransferase 1B (KMT1B), or Su(var)3-9 homolog 2) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.


Pssm-ID: 380930 [Multi-domain]  Cd Length: 243  Bit Score: 112.68  E-value: 3.52e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1528 ECSSRCPNGDYCSNRRFQRKQHADVEVILTEK-KGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYaRNKNIHYYF 1606
Cdd:cd10532    62 ECNSRCKCGPDCPNRVVQKGTQYSLCIFRTSNgRGWGVKTLQKIKKNSFVMEYVGEVITSEEAERRGQFY-DSKGITYLF 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1607 -MALKNDEI-IDATQKGNCSRFMNHSCEPNCETQKWTVNG---QL-RVGFFTTKLVPSGSELTFDYQFQRYGK------- 1673
Cdd:cd10532   141 dLDYESDEFtVDAARYGNVSHFVNHSCDPNLQVFNVFIDNldtRLpRIALFSTRTIKAGEELTFDYQMKGSGDlssdsid 220

                         170       180
                  ....*....|....*....|...
gi 197313748 1674 --EAQK-----CFCGSANCRGYL 1689
Cdd:cd10532   221 nsPAKKrvrtvCKCGAVTCRGYL 243
SET COG2940
SET domain-containing protein (function unknown) [General function prediction only];
1548-1687 9.96e-27

SET domain-containing protein (function unknown) [General function prediction only];


Pssm-ID: 442183 [Multi-domain]  Cd Length: 134  Bit Score: 107.35  E-value: 9.96e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1548 QHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARvkeYARNKNIHYYFMALKNDEIIDATQKGNCSRFM 1627
Cdd:COG2940     4 LHPRIEVRPSPIHGRGVFATRDIPKGTLIGEYPGEVITWAEAERR---EPHKEPLHTYLFELDDDGVIDGALGGNPARFI 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1628 NHSCEPNCEtqkwTVNGQLRVGFFTTKLVPSGSELTFDYQFQrYGKEAQKCFCgsANCRG 1687
Cdd:COG2940    81 NHSCDPNCE----ADEEDGRIFIVALRDIAAGEELTYDYGLD-YDEEEYPCRC--PNCRG 133
SET_SETD1 cd19169
SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and ...
 1561-1686 4.98e-26

SET domain (including post-SET domain) found in SET domain-containing protein 1 (SETD1) and similar proteins; This family includes SET domain-containing protein 1A (SETD1A) and SET domain-containing protein 1B (SETD1B). These proteins are histone-lysine N-methyltransferases that specifically methylate 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated.


Pssm-ID: 380946  Cd Length: 148  Bit Score: 105.88  E-value: 4.98e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1561 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKW 1640
Cdd:cd19169    24 DWGLFALEPIAADEMVIEYVGQVIRQSVADEREKRYEAIGIGSSYLFRVDDDTIIDATKCGNLARFINHSCNPNCYAKII 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 197313748 1641 TVNGQLRVGFFTTKLVPSGSELTFDYQFQRygkEAQK--CFCGSANCR 1686
Cdd:cd19169   104 TVESQKKIVIYSKRPIAVNEEITYDYKFPI---EDEKipCLCGAPQCR 148
SET_SETDB2 cd10523
SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 2 (SETDB2) ...
 1494-1689 2.10e-25

SET domain (including pre-SET and post-SET domains) found in SET domain bifurcated 2 (SETDB2) and similar proteins; SETDB2 (EC 2.1.1.43; also termed chronic lymphocytic leukemia deletion region gene 8 protein (CLLD8), or lysine N-methyltransferase 1F (KMT1F)) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3). It is involved in left-right axis specification in early development and mitosis.


Pssm-ID: 380921 [Multi-domain]  Cd Length: 266  Bit Score: 108.00  E-value: 2.10e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1494 IKRMQCECTPL-----SKDERAQGEIACGEDcLNRLLM------IECSSRCP-NGDYCSNRRFQRKQHADVEVILTEKKG 1561
Cdd:cd10523    41 IDILKCACLQLtarafSKSESSPSKGGRGYK-YKRLQEpipsglYECNVSCKcNRMLCQNRVVQHGLQVRLQVFKTEKKG 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1562 WGLRAAKDLPSNTFVLEYCGEVL----DHKEFKARVKEYARNKNIHYYFMAL-------KNDEI--IDATQKGNCSRFMN 1628
Cdd:cd10523   120 WGVRCLDDIDKGTFVCIYAGRVLsrarSPTEPLPPKLELPSENEVEVVTSWLilskkrkLRENVcfLDASKEGNVGRFLN 199

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 197313748 1629 HSCEPNCETQKWTVNGQLR----VGFFTTKLVPSGSELTFDYQFQRyGKEAQK---CFCGSANCRGYL 1689
Cdd:cd10523   200 HSCCPNLFVQNVFVDTHDKnfpwVAFFTNRVVKAGTELTWDYSYDA-GTSPEQeipCLCGVNKCQKKI 266
SET_EHMT1 cd10535
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 1525-1686 3.31e-25

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 1 (EHMT1) and similar proteins; EHMT1 (also termed Eu-HMTase1, G9a-like protein 1, GLP, GLP1, histone H3-K9 methyltransferase 5, H3-K9-HMTase 5, or lysine N-methyltransferase 1D (KMT1D)) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380933 [Multi-domain]  Cd Length: 231  Bit Score: 106.56  E-value: 3.31e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1525 LMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEfkARVKEyarnKNIHY 1604
Cdd:cd10535    66 LIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSE--ADVRE----EDSYL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1605 YFMALKNDEI--IDATQKGNCSRFMNHSCEPNCETQKWTVNGQ----LRVGFFTTKLVPSGSELTFDY--QFQRYGKEAQ 1676
Cdd:cd10535   140 FDLDNKDGEVycIDARFYGNVSRFINHHCEPNLVPVRVFMAHQdlrfPRIAFFSTRLIEAGEQLGFDYgeRFWDIKGKLF 219

                         170
                  ....*....|
gi 197313748 1677 KCFCGSANCR 1686
Cdd:cd10535   220 SCRCGSPKCR 229
SET_SUV39H1 cd10525
SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 ...
 1528-1689 1.86e-23

SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 1 (SUV39H1) and similar proteins; SUV39H1 (EC 2.1.1.43; also termed histone H3-K9 methyltransferase 1, H3-K9-HMTase 1, lysine N-methyltransferase 1A (KMT1A), position-effect variegation 3-9 homolog (SUV39H), or Su(var)3-9 homolog 1) acts as a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-9' of histone H3 (H3K9me3) using monomethylated H3 'Lys-9' as substrate. It mainly functions in heterochromatin regions, thereby playing a central role in the establishment of constitutive heterochromatin at pericentric and telomere regions.


Pssm-ID: 380923 [Multi-domain]  Cd Length: 255  Bit Score: 102.28  E-value: 1.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1528 ECSSRCPNGDYCSNRRFQRKQHADVEVILTEK-KGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYF 1606
Cdd:cd10525    64 ECNSRCRCGPDCPNRVVQKGIQYDLCIFRTDNgRGWGVRTLEKIRKNSFVMEYVGEIITSEEAERRGQIYDRQGATYLFD 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1607 MALKND-EIIDATQKGNCSRFMNHSCEPNCETQKWTVNG---QL-RVGFFTTKLVPSGSELTFDYQ-------------- 1667
Cdd:cd10525   144 LDYVEDvYTVDAAYYGNISHFVNHSCDPNLQVYNVFIDNldeRLpRIALFATRTIRAGEELTFDYNmqvdpvdaestkmd 223

                         170       180       190
                  ....*....|....*....|....*....|.
gi 197313748 1668 --FQRYGKEAQ-------KCFCGSANCRGYL 1689
Cdd:cd10525   224 snFGLAGLPGSpkkrvriECKCGVRSCRKYL 254
SET_KMT2D cd19209
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) ...
 1542-1689 3.45e-23

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2D (KMT2D) and similar proteins; KMT2D (EC2.1.1.43; also termed lysine N-methyltransferase 2D, ALL1-related protein (ALR), or myeloid/lymphoid or mixed-lineage leukemia protein 2 (MLL2)), acts as histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is a coactivator for estrogen receptor by being recruited by ESR1, thereby activating transcription. KMT2D is a subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation.


Pssm-ID: 380986 [Multi-domain]  Cd Length: 155  Bit Score: 98.23  E-value: 3.45e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1542 RRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYaRNKNIHYYFMALKNDEIIDATQKG 1621
Cdd:cd19209     8 RRLKTEWKNNVYLARSRIQGLGLYAAKDLEKHTMVIEYIGTIIRNEVANRREKIY-EEQNRGIYMFRINNEHVIDATLTG 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197313748 1622 NCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQ-KCFCGSANCRGYL 1689
Cdd:cd19209    87 GPARYINHSCAPNCVAEVVTFDKEDKIIIISSRRIPKGEELTYDYQFDFEDDQHKiPCHCGAWNCRKWM 155
SET_EZH2 cd19218
SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43) ...
 1561-1668 6.39e-23

SET domain found in enhancer of zeste homolog 2 (EZH2) and similar proteins; EZH2 (EC 2.1.1.43), also termed lysine N-methyltransferase 6, or ENX-1, or histone-lysine N-methyltransferase EZH2, is a catalytic subunit of the polycomb repressive complex 2 (PRC2)/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. PRC2 is involved in several cancers; EZH2 is overexpressed in breast, liver and prostate cancer, while point mutations in EZH2 alter the substrate preference and product specificity of PRC2 in Non-Hodgkin lymphomas (NHLs). Thus, PRC2 is a popular target for cancer therapeutics.


Pssm-ID: 380995  Cd Length: 120  Bit Score: 96.14  E-value: 6.39e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1561 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYarNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKW 1640
Cdd:cd19218    15 GWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVY--DKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVM 92

                          90       100
                  ....*....|....*....|....*...
gi 197313748 1641 TVNGQLRVGFFTTKLVPSGSELTFDYQF 1668
Cdd:cd19218    93 MVNGDHRIGIFAKRAIQTGEELFFDYRY 120
SET_EHMT2 cd10533
SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine ...
 1492-1686 8.40e-23

SET domain (including pre-SET and post-SET domains) found in euchromatic histone-lysine N-methyltransferase 2 (EHMT2) and similar proteins; EHMT2 (also termed Eu-HMTase2, HLA-B-associated transcript 8, histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, lysine N-methyltransferase 1C (KMT1C), or protein G9a) acts as a histone-lysine N-methyltransferase that specifically mono- and dimethylates 'Lys-9' of histone H3 (H3K9me1 and H3K9me2, respectively) in euchromatin.


Pssm-ID: 380931 [Multi-domain]  Cd Length: 239  Bit Score: 99.71  E-value: 8.40e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1492 RDIKRMQ-CECTPLSKDER---AQGEIACGEDCLNRLL----------MIECSSRCPNGDYCSNRRFQRKQHADVEVILT 1557
Cdd:cd10533    19 RNITHLQhCTCVDDCSSSNclcGQLSIRCWYDKDGRLLqefnkiepplIFECNQACSCWRNCKNRVVQSGIKVRLQLYRT 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1558 EKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEfkARVKEyarnKNIHYYFMALKNDEI--IDATQKGNCSRFMNHSCEPN- 1634
Cdd:cd10533    99 AKMGWGVRALQTIPQGTFICEYVGELISDAE--ADVRE----DDSYLFDLDNKDGEVycIDARYYGNISRFINHLCDPNi 172

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 197313748 1635 CETQKWTVNGQL---RVGFFTTKLVPSGSELTFDY--QFQRYGKEAQKCFCGSANCR 1686
Cdd:cd10533   173 IPVRVFMLHQDLrfpRIAFFSSRDIRTGEELGFDYgdRFWDIKSKYFTCQCGSEKCK 229
SET_SUV39H_DIM5-like cd19473
SET domain (including pre-SET domain) found in Neurospora crassa (DIM-5) and similar proteins; ...
 1523-1689 1.10e-22

SET domain (including pre-SET domain) found in Neurospora crassa (DIM-5) and similar proteins; This subfamily contains Neurospora crassa DIM-5 (also termed H3-K9-HMTase dim-5, or HKMT) which functions as histone-lysine N-methyltransferase that specifically trimethylates histone H3 to form H3K9me3.


Pssm-ID: 380996 [Multi-domain]  Cd Length: 274  Bit Score: 100.47  E-value: 1.10e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1523 RLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTE-KKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKE--YARN 1599
Cdd:cd19473    78 RLPIYECHEGCACSDDCPNRVVERGRKVPLQIFRTSdGRGWGVRSTVDIKRGQFVDCYVGEIITPEEAQRRRDAatIAQR 157

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1600 KNIhyYFMAL---KNDEIIDATQKGNC-----------SRFMNHSCEPNcetqkwtvngqLR----VG-----------F 1650
Cdd:cd19473   158 KDV--YLFALdkfSDPDSLDPRLRGDPyeidgefmsgpTRFINHSCDPN-----------LRifarVGdhadkhihdlaF 224

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 197313748 1651 FTTKLVPSGSELTFDY-----------QFQRYGKEAQKCFCGSANCRGYL 1689
Cdd:cd19473   225 FAIKDIPRGTELTFDYvdgvtgldddaGDEEKEKEMTKCLCGSPKCRGYL 274
SET_KMT2A cd19206
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) ...
 1542-1689 2.93e-22

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2A (KMT2A) and similar proteins; KMT2A (EC2.1.1.43; also termed lysine N-methyltransferase 2A, ALL-1, CXXC-type zinc finger protein 7 (CXXC7), myeloid/lymphoid or mixed-lineage leukemia (MLL), myeloid/lymphoid or mixed-lineage leukemia protein 1 (MLL1), trithorax-like protein (TRX1), or zinc finger protein HRX) acts as a histone methyltransferase that plays an essential role in early development and hematopoiesis. It is a catalytic subunit of the MLL1/MLL complex, a multiprotein complex that mediates both methylation of 'Lys-4' of histone H3 (H3K4me) complex and acetylation of 'Lys-16' of histone H4 (H4K16ac).


Pssm-ID: 380983 [Multi-domain]  Cd Length: 154  Bit Score: 95.47  E-value: 2.93e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1542 RRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKeYARNKNIHYYFMALKNDEIIDATQKG 1621
Cdd:cd19206     6 RHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYSGNVIRSILTDKREK-YYDSKGIGCYMFRIDDSEVVDATMHG 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197313748 1622 NCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ-RYGKEAQKCFCGSANCRGYL 1689
Cdd:cd19206    85 NAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPiEDASNKLPCNCGAKKCRKFL 153
SET_EZH1 cd19217
SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43) ...
 1561-1670 1.26e-21

SET domain found in enhancer of zeste homolog 1 (EZH1) and similar proteins; EZH1 (EC 2.1.1.43), also termed ENX-2, or histone-lysine N-methyltransferase EZH1, is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. It can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively.


Pssm-ID: 380994  Cd Length: 136  Bit Score: 92.82  E-value: 1.26e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1561 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYarNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKW 1640
Cdd:cd19217    17 GWGTFIKESVQKNEFISEYCGELISQDEADRRGKVY--DKYMSSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVV 94

                          90       100       110
                  ....*....|....*....|....*....|
gi 197313748 1641 TVNGQLRVGFFTTKLVPSGSELTFDYQFQR 1670
Cdd:cd19217    95 MVNGDHRIGIFAKRAIQQGEELFFDYRYSQ 124
SET_AtSUVH-like cd10545
SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar ...
 1501-1666 1.59e-21

SET domain found in Arabidopsis thaliana histone H3-K9 methyltransferases (SUVHs) and similar proteins; Arabidopsis thaliana SUVH protein (also termed suppressor of variegation 3-9 homolog protein) is a histone-lysine N-methyltransferase that methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression. Some family members contain a post-SET domain which binds a Zn2+ ion. Most family members, except for Arabidopsis thaliana SUVH9, contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380943 [Multi-domain]  Cd Length: 232  Bit Score: 95.93  E-value: 1.59e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1501 CTPLSKD----ERAQGEIACGED--CLNRLLMI-ECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSN 1573
Cdd:cd10545    30 CTDGASDcacvKKNGGEIPYNFNgrLIRAKPAIyECGPLCKCPPSCYNRVTQKGLRYRLEVFKTAERGWGVRSWDSIPAG 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1574 TFVLEYCGEVLDHKEFKARVK--EYARNKNIHY------------YFMALKNDE----------IIDATQKGNCSRFMNH 1629
Cdd:cd10545   110 SFICEYVGELLDTSEADTRSGndDYLFDIDNRQtnrgwdggqrldVGMSDGERSsaedeessefTIDAGSFGNVARFINH 189

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 197313748 1630 SCEPNCETQK--WTVNGQL--RVGFFTTKLVPSGSELTFDY 1666
Cdd:cd10545   190 SCSPNLFVQCvlYDHNDLRlpRVMLFAADNIPPLQELTYDY 230
SET_SETD5-like cd10529
SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine ...
 1563-1668 3.34e-21

SET domain found in SET domain-containing protein 5 (SETD5), inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. KMT2E (also termed inactive lysine N-methyltransferase 2E or myeloid/lymphoid or mixed-lineage leukemia protein 5 (MLL5)) associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription. The family also includes Saccharomyces cerevisiae SET domain-containing proteins, SET3 and SET4, and Schizosaccharomyces pombe SET3. Most of these family members contain a post-SET domain which harbors a zinc-binding site.


Pssm-ID: 380927  Cd Length: 127  Bit Score: 91.57  E-value: 3.34e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1563 GLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEI-IDATQKGNCSRFMNHSCEPNCETQKWT 1641
Cdd:cd10529    18 GLVATEDISPGEPILEYKGEVSLRSEFKEDNGFFKRPSPFVFFYDGFEGLPLcVDARKYGNEARFIRRSCRPNAELRHVV 97

                          90       100       110
                  ....*....|....*....|....*....|
gi 197313748 1642 V-NGQLRVGFFTTKLVPSGSELT--FDYQF 1668
Cdd:cd10529    98 VsNGELRLFIFALKDIRKGTEITipFDYDY 127
SET_SETD8 cd10528
SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2. ...
 1553-1666 3.37e-21

SET domain found in SET domain-containing protein 8 (SETD8) and similar proteins; SETD8 (EC 2.1.1.43; also termed N-lysine methyltransferase KMT5A, H4-K20-HMTase KMT5A, lysine N-methyltransferase 5A, lysine-specific methylase 5A, PR/SET domain-containing protein 07, PR-Set7 or PR/SET07) is a nucleosomal histone-lysine N-methyltransferase that specifically monomethylates 'Lys-20' of histone H4 (H4K20me1). It plays a central role in the silencing of euchromatic genes.


Pssm-ID: 380926 [Multi-domain]  Cd Length: 141  Bit Score: 91.87  E-value: 3.37e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1553 EVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIH---YYFMALKNDEIIDAT-QKGNCSRFMN 1628
Cdd:cd10528    20 KVIEIDGKGRGVIATRPFEKGDFVVEYHGDLITITEAKKREALYAKDPSTGcymYYFQYKGKTYCVDATkESGRLGRLIN 99

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 197313748 1629 HSC-EPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:cd10528   100 HSKkKPNLKTKLLVIDGVPHLILVAKRDIKPGEELLYDY 138
SET_SETD1A cd19204
SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and ...
 1562-1689 4.93e-21

SET domain (including post-SET domain) found in SET domain-containing protein 1A (SETD1A) and similar proteins; SETD1A (EC2.1.1.43), also termed lysine N-methyltransferase 2F, or Set1/Ash2 histone methyltransferase complex subunit SET1, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me), when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Human SET domain containing protein 1A (hSETD1A) expression occurs at a high rate in hepatocellular carcinoma patients and controls tumor metastasis in breast cancer by activating MMP expression.


Pssm-ID: 380981 [Multi-domain]  Cd Length: 153  Bit Score: 92.01  E-value: 4.93e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1562 WGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWT 1641
Cdd:cd19204    26 WGLFAMEPIAADEMVIEYVGQNIRQVVADMREKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAKVIT 105

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 197313748 1642 VNGQLRVGFFTTKLVPSGSELTFDYQFQRygkEAQK--CFCGSANCRGYL 1689
Cdd:cd19204   106 IESQKKIVIYSKQPIGVNEEITYDYKFPI---EDNKipCLCGTENCRGTL 152
SET_KMT2C cd19208
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) ...
 1542-1689 1.57e-20

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2C (KMT2C) and similar proteins; KMT2C (EC2.1.1.43; also termed lysine N-methyltransferase 2C, homologous to ALR protein (HALR) myeloid/lymphoid, or mixed-lineage leukemia protein 3 (MLL3)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me) and may be involved in leukemogenesis and developmental disorder. KMT2C is a catalytic subunit of MLL2/3 complex, a coactivator complex of nuclear receptors, involved in transcriptional coactivation. Overexpression of KMT2C is associated with estrogen receptor-positive breast cancer; KMT2C mediates the estrogen dependence of breast cancer through regulation of estrogen receptor alpha (ERalpha) enhancer function. KMT2C is frequently mutated in certain populations with diffuse-type gastric adenocarcinomas (DGA); its loss promotes epithelial-to-mesenchymal transition (EMT) and is associated with worse overall survival.


Pssm-ID: 380985 [Multi-domain]  Cd Length: 154  Bit Score: 90.46  E-value: 1.57e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1542 RRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLdHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKG 1621
Cdd:cd19208     7 RKMKTEWKSNVYLARSRIQGLGLYAARDIEKHTMVIEYIGTII-RNEVANRKEKLYESQNRGVYMFRIDNDHVIDATLTG 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197313748 1622 NCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQ-KCFCGSANCRGYL 1689
Cdd:cd19208    86 GPARYINHSCAPNCVAEVVTFEKGHKIIISSSRRIQKGEELCYDYKFDFEDDQHKiPCHCGAVNCRKWM 154
AWS smart00570
associated with SET domains; subdomain of PRESET
 1495-1549 4.46e-20

associated with SET domains; subdomain of PRESET


Pssm-ID: 197795  Cd Length: 50  Bit Score: 85.53  E-value: 4.46e-20
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*
gi 197313748   1495 KRMQCECTPLSKDEraqgeIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQH 1549
Cdd:smart00570    1 DIMTCECKPTDDDE-----TACGSDCLNRMLFIECSSSCPCGSYCSNQRFQKRQY 50
SET_SETD1B cd19205
SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and ...
 1562-1689 1.01e-19

SET domain (including post-SET domain) found in SET domain-containing protein 1B (SETD1B) and similar proteins; SETD1B (EC2.1.1.43), also termed lysine N-methyltransferase 2G, is a histone-lysine N-methyltransferase that specifically methylates 'Lys-4' of histone H3 (H3K4me) when part of the SET1 histone methyltransferase (HMT) complex, but not if the neighboring 'Lys-9' residue is already methylated. Loss of SETD1B occurs in up to half the gastric and colorectal cancers, most commonly via SETD1B mutations, while de novo variants in SETD1B are associated with intellectual disability, epilepsy and autism.


Pssm-ID: 380982 [Multi-domain]  Cd Length: 153  Bit Score: 88.19  E-value: 1.01e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1562 WGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWT 1641
Cdd:cd19205    26 WGLFAMEPIAADEMVIEYVGQNIRQVIADMREKRYEDEGIGSSYMFRVDHDTIIDATKCGNFARFINHSCNPNCYAKVIT 105

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 197313748 1642 VNGQLRVGFFTTKLVPSGSELTFDYQFQrYGKEAQKCFCGSANCRGYL 1689
Cdd:cd19205   106 VESQKKIVIYSKQHINVNEEITYDYKFP-IEDVKIPCLCGSENCRGTL 152
SET_LegAS4-like cd10522
SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and ...
 1560-1666 6.89e-19

SET domain found in Legionella pneumophila type IV secretion system effector LegAS4 and similar proteins; LegAS4 is a type IV secretion system effector of Legionella pneumophila. It contains a SET domain that is involved in the modification of Lys4 of histone H3 (H3K4) in the nucleolus of the host cell, thereby enhancing heterochromatic rDNA transcription. It also contains an ankyrin repeat domain of unknown function at its C-terminal region.


Pssm-ID: 380920 [Multi-domain]  Cd Length: 122  Bit Score: 84.70  E-value: 6.89e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1560 KGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKnihyYFMALKNDEI-IDATQKGNCSRFMNHSCEPNCETQ 1638
Cdd:cd10522    13 NGLGLFAAETIAKGEFVGEYTGEVLDRWEEDRDSVYHYDPL----YPFDLNGDILvIDAGKKGNLTRFINHSDQPNLELI 88

                          90       100
                  ....*....|....*....|....*...
gi 197313748 1639 KWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:cd10522    89 VRTLKGEQHIGFVAIRDIKPGEELFISY 116
SET_KMT2B cd19207
SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) ...
 1542-1689 1.81e-18

SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 2B (KMT2B) and similar proteins; KMT2B (EC2.1.1.43; also termed lysine N-methyltransferase 2B, myeloid/lymphoid or mixed-lineage leukemia protein 4 (MLL2/MLL4), trithorax homolog 2 (TRX2), or WW domain-binding protein 7 (WBP-7)), acts as a histone methyltransferase that methylates 'Lys-4' of histone H3 (H3K4me). It is required during the transcriptionally active period of oocyte growth for the establishment and/or maintenance of bulk H3K4 trimethylation (H3K4me3), global transcriptional silencing that precedes resumption of meiosis, oocyte survival and normal zygotic genome activation.


Pssm-ID: 380984 [Multi-domain]  Cd Length: 154  Bit Score: 84.69  E-value: 1.81e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1542 RRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYaRNKNIHYYFMALKNDEIIDATQKG 1621
Cdd:cd19207     6 RHLKKTSKEAVGVYRSAIHGRGLFCKRNIDAGEMVIEYSGIVIRSVLTDKREKFY-DSKGIGCYMFRIDDFDVVDATMHG 84

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 197313748 1622 NCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ-RYGKEAQKCFCGSANCRGYL 1689
Cdd:cd19207    85 NAARFINHSCEPNCYSRVIHVEGQKHIVIFALRKIYRGEELTYDYKFPiEDASNKLPCNCGAKRCRRFL 153
SET_EZH-like cd19168
SET domain found in enhancer of zeste homolog 1 (EZH1) and zeste homolog 2 (EZH2) of polycomb ...
 1561-1666 3.88e-17

SET domain found in enhancer of zeste homolog 1 (EZH1) and zeste homolog 2 (EZH2) of polycomb repressive complex 2 (PRC2), and similar proteins; The family includes EZH1 and EZH2. EZH1 (EC 2.1.1.43; also termed ENX-2, or histone-lysine N-methyltransferase EZH1) is a catalytic subunit of the PRC2/EED-EZH1 complex, which methylates 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. EZH2 (EC 2.1.1.43; also termed lysine N-methyltransferase 6, ENX-1, or histone-lysine N-methyltransferase EZH2) is a catalytic subunit of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' (H3K9me) and 'Lys-27' (H3K27me) of histone H3, leading to transcriptional repression of the affected target gene. Both EZH1 and EZH2 can mono-, di- and trimethylate 'Lys-27' of histone H3 to form H3K27me1, H3K27me2 and H3K27me3, respectively. PRC2 is involved in several cancers; EZH2 is overexpressed in breast, liver and prostate cancer, while point mutations in EZH2 alter the substrate preference and product specificity of PRC2 in Non-Hodgkin lymphomas (NHLs). Thus, PRC2 is a popular target for cancer therapeutics.


Pssm-ID: 380945  Cd Length: 124  Bit Score: 79.54  E-value: 3.88e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1561 GWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKeyaRNKNIHYYFMALKNDEI-IDATQKGNCSRFMNHSCEP----NC 1635
Cdd:cd19168    13 GLGLFAAEDIKEGEFVIEYTGELISHDEGVRREH---RRGDVSYLYLFEEQEGIwVDAAIYGNLSRYINHATDKvktgNC 89

                          90       100       110
                  ....*....|....*....|....*....|.
gi 197313748 1636 ETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:cd19168    90 MPKIMYVNHEWRIKFTAIKDIKIGEELFFNY 120
SET cd08161
SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, ...
 1552-1666 4.10e-15

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily; The Su(var)3-9, Enhancer-of-zeste, Trithorax (SET) domain superfamily corresponds to SET domain-containing lysine methyltransferases, which catalyze site and state-specific methylation of lysine residues in histones that are fundamental in epigenetic regulation of gene activation and silencing in eukaryotic organisms. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains has been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as N-SET and C-SET. C-SET forms an unusual and conserved knot-like structure of probable functional importance. In addition to N-SET and C-SET, an insert region (I-SET) and flanking regions of high structural variability form part of the overall structure. Some family members contain a pre-SET domain, which is found in a number of histone methyltransferases (HMTase), and a post-SET domain, which harbors a zinc-binding site.


Pssm-ID: 380914 [Multi-domain]  Cd Length: 72  Bit Score: 71.90  E-value: 4.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1552 VEVILTEKKGWGLRAAKDLPSNTFVLeycgevldhkefkarvkeyarnknihyyfmalkndeiidatqkgnCSRFMNHSC 1631
Cdd:cd08161     2 IRPSTIPGAGFGLFATRDIPKGEVIG---------------------------------------------LARFINHSC 36

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 197313748 1632 EPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:cd08161    37 EPNCEFEEVYVGGKPRVFIVALRDIKAGEELTVDY 71
SET_SETD5 cd19181
SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and ...
 1564-1685 4.61e-13

SET domain (including post-SET domain) found in SET domain-containing protein 5 (SETD5) and similar proteins; SETD5 is a probable transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. SETD5 loss-of-function mutations are a likely cause of a familial syndromic intellectual disability with variable phenotypic expression.


Pssm-ID: 380958  Cd Length: 150  Bit Score: 68.88  E-value: 4.61e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1564 LRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEI-IDATQKGNCSRFMNHSCEPNCETQKWTV 1642
Cdd:cd19181    21 LRAARDLALDTLIIEYRGKVMLRQQFEVNGHFFKRPYPFVLFYSKFNGVEMcVDARTFGNDARFIRRSCTPNAEVRHMIA 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 197313748 1643 NGQLRVGFFTTKLVPSGSELT--FDYQFQRYGKEAQkCFC--GSANC 1685
Cdd:cd19181   101 DGMIHLCIYAVAAIAKDAEVTiaFDYEYSNCNYKVD-CAChkGNRNC 146
WW pfam00397
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ...
 2391-2420 9.83e-12

WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro.


Pssm-ID: 459800 [Multi-domain]  Cd Length: 30  Bit Score: 61.37  E-value: 9.83e-12
                           10        20        30
                   ....*....|....*....|....*....|
gi 197313748  2391 LPPNWKTARDPEGKIYYYHVITRQTQWDPP 2420
Cdd:pfam00397    1 LPPGWEERWDPDGRVYYYNHETGETQWEKP 30
SET_KMT2E cd19182
SET domain found in inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar ...
 1564-1668 3.39e-11

SET domain found in inactive histone-lysine N-methyltransferase 2E (KMT2E) and similar proteins; KMT2E (also termed inactive lysine N-methyltransferase 2E, myeloid/lymphoid or mixed-lineage leukemia protein 5 (MLL5)) plays a key role in hematopoiesis, spermatogenesis and cell cycle progression. It associates with chromatin regions downstream of transcriptional start sites of active genes and thus regulates gene transcription. Lack of key residues in the SET domain as well as the presence of an unusually large loop in the SET-I subdomain preclude the interaction of MLL5 SET with its cofactor and substrate thus making MLL5 devoid of any in vitro methyltransferase activity on full-length histones and histone H3 peptide.


Pssm-ID: 380959  Cd Length: 129  Bit Score: 62.99  E-value: 3.39e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1564 LRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEI-IDATQKGNCSRFMNHSCEPNCETQKWTV 1642
Cdd:cd19182    21 LKAAKDLPPDTLIIEYRGKFMLREQFEANGYFFKRPYPFVLFYSKFHGLEMcVDARTFGNEARFIRRSCTPNAEVRHVIE 100

                          90       100
                  ....*....|....*....|....*...
gi 197313748 1643 NGQLRVGFFTTKLVPSGSELT--FDYQF 1668
Cdd:cd19182   101 DGTIHLYIYSIRSIPKGTEITiaFDFDY 128
SET_SpSET3-like cd19183
SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET ...
 1550-1668 1.31e-10

SET domain (including post-SET domain) found in Schizosaccharomyces pombe SET domain-containing protein 3 (SETD3) and similar proteins; Schizosaccharomyces pombe SETD3 functions as a transcriptional regulator that acts via the formation of large multiprotein complexes that modify and/or remodel the chromatin. It is required for both, gene activation and repression.


Pssm-ID: 380960  Cd Length: 173  Bit Score: 62.42  E-value: 1.31e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1550 ADVEVILTEKKGW-GLRAAKDLPSNTFVLEYCGEVldhkefkARVKEYARNKNIHYYFMALKNDEI---------IDATQ 1619
Cdd:cd19183     1 TEISSIGLANASRfGLFADRPIPAGDPIQELLGEI-------GLQSEYIADPENQYQILGAPKPHVffhpqsplyIDTRR 73

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 197313748 1620 KGNCSRFMNHSCEPNCE--TQKWTVNGQLRVGFFTTKLVPSGSELTFDYQF 1668
Cdd:cd19183    74 SGSVARFIRRSCRPNAElvTVASDSGSVLKFVLYASRDISPGEEITIGWDW 124
AWS pfam17907
AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc ...
 1515-1547 5.37e-10

AWS domain; This entry represents the AWS (associated with SET domain) domain. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET domain.


Pssm-ID: 465559  Cd Length: 39  Bit Score: 56.67  E-value: 5.37e-10
                           10        20        30
                   ....*....|....*....|....*....|....
gi 197313748  1515 ACGEDCLNRLLMIECSSR-CPNGDYCSNRRFQRK 1547
Cdd:pfam17907    6 GCGSDCINRMLFVECTPKtCPCGESCQNQRFQRK 39
WW cd00201
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ...
 2392-2422 6.18e-10

Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.


Pssm-ID: 238122 [Multi-domain]  Cd Length: 31  Bit Score: 56.00  E-value: 6.18e-10
                          10        20        30
                  ....*....|....*....|....*....|.
gi 197313748 2392 PPNWKTARDPEGKIYYYHVITRQTQWDPPTW 2422
Cdd:cd00201     1 PPGWEERWDPDGRVYYYNHNTKETQWEDPRE 31
WW smart00456
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ...
 2391-2422 7.39e-10

Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.


Pssm-ID: 197736 [Multi-domain]  Cd Length: 33  Bit Score: 56.07  E-value: 7.39e-10
                            10        20        30
                    ....*....|....*....|....*....|..
gi 197313748   2391 LPPNWKTARDPEGKIYYYHVITRQTQWDPPTW 2422
Cdd:smart00456    2 LPPGWEERKDPDGRPYYYNHETKETQWEKPRE 33
SET_SMYD cd20071
SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing ...
 1558-1666 9.90e-06

SET domain (including SET domain and post-SET domain) found in SET and MYND domain-containing protein, and similar proteins; The family includes SET and MYND domain-containing proteins, SMYD1-SYMD5. SMYD1 (EC 2.1.1.43; also termed BOP) is a heart and muscle specific SET-MYND domain containing protein, which functions as a histone methyltransferase and regulates downstream gene transcription. It methylates histone H3 at 'Lys-4' (H3K4me), seems able to perform both mono-, di-, and trimethylation. SMYD2 (also termed HSKM-B, or lysine N-methyltransferase 3C (KMT3C)) functions as a histone methyltransferase that methylates both histones and non-histone proteins, including p53/TP53 and RB1. It specifically methylates histone H3 'Lys-4' (H3K4me) and dimethylates histone H3 'Lys-36' (H3K36me2). SMYD3 (also termed zinc finger MYND domain-containing protein 1) functions as a histone methyltransferase that specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but not monomethylation. It also methylates 'Lys-5' of histone H4. SMYD3 plays an important role in transcriptional activation as a member of an RNA polymerase complex. SMYD4 functions as a potential tumor suppressor that plays a critical role in breast carcinogenesis at least partly through inhibiting the expression of PDGFR-alpha. SMYD5 (also termed protein NN8-4AG, or retinoic acid-induced protein 15) functions as histone lysine methyltransferase that mediates H4K20me3 at heterochromatin regions.


Pssm-ID: 380997 [Multi-domain]  Cd Length: 122  Bit Score: 46.99  E-value: 9.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1558 EKKGWGLRAAKDLPSNTFVLEycgevldhkefkarvkEYArnknihyYFMALKND-EIIDATQKGNC-----SRFMNHSC 1631
Cdd:cd20071     7 GSKGRGLVATRDIEPGELILV----------------EKP-------LVSVPSNSfSLTDGLNEIGVglfplASLLNHSC 63

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 197313748 1632 EPNCEtqkWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:cd20071    64 DPNAV---VVFDGNGTLRVRALRDIKAGEELTISY 95
SET_ATXR5_6-like cd10539
SET domain found in fungal protein lysine methyltransferase SET5 and similar protein; The ...
 1559-1666 5.39e-05

SET domain found in fungal protein lysine methyltransferase SET5 and similar protein; The family includes Arabidopsis thaliana ATXR5 and ATXR6. Both ATXR5 (also termed protein SET DOMAIN GROUP 15, or TRX-related protein 5) and ATXR6 (also termed protein SET DOMAIN GROUP 34, or TRX-related protein 6) function as histone methyltransferase that specifically monomethylates 'Lys-37' of histone H3 (H3K27me1). They are required for chromatin structure and gene silencing.


Pssm-ID: 380937  Cd Length: 138  Bit Score: 45.48  E-value: 5.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1559 KKGWGLRAAKDLPSNTFVLEYCGEVldhKEFKARvkEYARNKNIhyyfMAL------KNDEIIDATQKGNCSRFM----N 1628
Cdd:cd10539    13 REGFTVEADGFIKDLTIIAEYTGDV---DYIRNR--EFDDNDSI----MTLllagdpSKSLVICPDKRGNIARFIsginN 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 197313748 1629 HSCE----PNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:cd10539    84 HTKDgkkkQNCKCVRYSINGEARVLLVATRDIAKGERLYYDY 125
PostSET smart00508
Cysteine-rich motif following a subset of SET domains;
1674-1690 7.59e-05

Cysteine-rich motif following a subset of SET domains;


Pssm-ID: 214703  Cd Length: 17  Bit Score: 41.62  E-value: 7.59e-05
                            10
                    ....*....|....*..
gi 197313748   1674 EAQKCFCGSANCRGYLG 1690
Cdd:smart00508    1 KKQPCLCGAPNCRGFLG 17
SET_Suv4-20-like cd10524
SET domain (including post-SET domain) found in Drosophila melanogaster suppressor of ...
 1559-1686 3.47e-04

SET domain (including post-SET domain) found in Drosophila melanogaster suppressor of variegation 4-20 (Suv4-20) and similar proteins; Suv4-20 (also termed Su(var)4-20) is a histone-lysine N-methyltransferase that specifically trimethylates 'Lys-20' of histone H4. It acts as a dominant suppressor of position-effect variegation. The family also includes Suv4-20 homologs, lysine N-methyltransferase 5B (KMT5B) and lysine N-methyltransferase 5C (KMT5C). Both KMT5B (also termed lysine-specific methyltransferase 5B, or suppressor of variegation 4-20 homolog 1, or Su(var)4-20 homolog 1, or Suv4-20h1) and KMT5C (also termed lysine-specific methyltransferase 5C, or suppressor of variegation 4-20 homolog 2, or Su(var)4-20 homolog 2, or Suv4-20h2) are histone methyltransferases that specifically trimethylate 'Lys-20' of histone H4 (H4K20me3). They play central roles in the establishment of constitutive heterochromatin in pericentric heterochromatin regions.


Pssm-ID: 380922 [Multi-domain]  Cd Length: 141  Bit Score: 43.04  E-value: 3.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1559 KKGWGLRAAKDLPSNTFVLEYCGEVldhkeFKARVKEYARNKNihyyfmaLKNDEIIDATQKGNCS-------RFMNHSC 1631
Cdd:cd10524    17 HYGAKIIATKPIKKGEKIHELCGCI-----AELSEEEEALLRP-------GGNDFSVMYSSRKKCSqlwlgpaAFINHDC 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 197313748 1632 EPNCetqKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSanCR 1686
Cdd:cd10524    85 RPNC---KFVPTGKSTACVKVLRDIEPGEEITVYYGDNYFGENNEECECET--CE 134
SET_SpSet7-like cd10540
SET domain found in Schizossacharomyces pombe Set7 and similar proteins; Schizosaccharomyces ...
 1551-1666 8.58e-04

SET domain found in Schizossacharomyces pombe Set7 and similar proteins; Schizosaccharomyces pombe Set7 is a novel histone-lysine N-methyltransferase. The family also includes a viral histone H3 lysine 27 methyltransferase from Paramecium bursaria Chlorella virus 1 (PBCV-1).


Pssm-ID: 380938  Cd Length: 112  Bit Score: 41.08  E-value: 8.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 197313748 1551 DVEVILTEKKGWGLRAAKDLPSNTF-----VLEYCGEVLDHKEFKArVKEYARNKNIHYYFMALkndeiidatqkGNCSR 1625
Cdd:cd10540     1 RLEVKPSTLKGRGVFATRPIKKGEVieeapVIVLPKEEYQHLCKTV-LDHYVFSWGDGCLALAL-----------GYGSM 68

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 197313748 1626 FmNHSCEPNCEtqKWTVNGQLRVGFFTTKLVPSGSELTFDY 1666
Cdd:cd10540    69 F-NHSYTPNAE--YEIDFENQTIVFYALRDIEAGEELTINY 106
PRP40 COG5104
Splicing factor [RNA processing and modification];
2395-2436 7.98e-03

Splicing factor [RNA processing and modification];


Pssm-ID: 227435 [Multi-domain]  Cd Length: 590  Bit Score: 41.60  E-value: 7.98e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 197313748 2395 WKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAE 2436
Cdd:COG5104    58 WKECRTADGKVYYYNSITRESRWKIPPERKKVEPIAEQKHDE 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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