NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|54312078|ref|NP_055732|]
View 

netrin-G1 isoform G1c precursor [Homo sapiens]

Protein Classification

calcium-binding EGF-like domain-containing protein( domain architecture ID 11079789)

calcium-binding epidermal growth factor (EGF)-like domain-containing protein may play a crucial role in numerous protein-protein interactions

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Laminin_N pfam00055
Laminin N-terminal (Domain VI);
50-295 1.81e-78

Laminin N-terminal (Domain VI);


:

Pssm-ID: 459653  Cd Length: 230  Bit Score: 242.87  E-value: 1.81e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078    50 CQPESTDMTKYLKVKldpPDITCG-DPPETFCAMGNP---YMCNnECDASTPELAHPPELMFDFEGRHPSTFWQSATWke 125
Cdd:pfam00055   1 CYPAFGNLAFGREVS---ATSTCGlNGPERYCILSGLeggKKCF-ICDSRDPHNSHPPSNLTDSNNGTNETWWQSETG-- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078   126 YPKPLQVNITLSWSKTIELTDnIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHtvlEII 205
Cdd:pfam00055  75 VIQYENVNLTLDLGKEFHFTY-LILKFKSPRPAAMVLERSTDFGKTWQPYQYFASDCRRTFGRPSGPSRGIKDD---EVI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078   206 CTEEYSTGYTTNSKIIHFEIkdrfafFAGPRLRNMAslygqlDTTKKLRDFFTVTDLRIRLLRPA--VGEIFVDELHLAR 283
Cdd:pfam00055 151 CTSEYSDISPLTGGEVIFST------LEGRPSANIF------DYSPELQDWLTATNIRIRLLRLHtlGDELLDDPSVLRK 218

                         250
                  ....*....|..
gi 54312078   284 YFYAISDIKVRG 295
Cdd:pfam00055 219 YYYAISDISVGG 230
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 296-342 3.58e-08

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


:

Pssm-ID: 238012  Cd Length: 50  Bit Score: 49.66  E-value: 3.58e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 54312078 296 RCKCNLHATVCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
Cdd:cd00055   1 PCDCNGHGSLSGQcDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGG 48
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 373-397 1.09e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


:

Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 1.09e-03
                        10        20
                ....*....|....*....|....*...
gi 54312078 373 CQNGGTCHNNV---RCLCPAAYTGILCE 397
Cdd:cd00054  11 CQNGGTCVNTVgsyRCSCPPGYTGRNCE 38
 
Name Accession Description Interval E-value
Laminin_N pfam00055
Laminin N-terminal (Domain VI);
50-295 1.81e-78

Laminin N-terminal (Domain VI);


Pssm-ID: 459653  Cd Length: 230  Bit Score: 242.87  E-value: 1.81e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078    50 CQPESTDMTKYLKVKldpPDITCG-DPPETFCAMGNP---YMCNnECDASTPELAHPPELMFDFEGRHPSTFWQSATWke 125
Cdd:pfam00055   1 CYPAFGNLAFGREVS---ATSTCGlNGPERYCILSGLeggKKCF-ICDSRDPHNSHPPSNLTDSNNGTNETWWQSETG-- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078   126 YPKPLQVNITLSWSKTIELTDnIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHtvlEII 205
Cdd:pfam00055  75 VIQYENVNLTLDLGKEFHFTY-LILKFKSPRPAAMVLERSTDFGKTWQPYQYFASDCRRTFGRPSGPSRGIKDD---EVI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078   206 CTEEYSTGYTTNSKIIHFEIkdrfafFAGPRLRNMAslygqlDTTKKLRDFFTVTDLRIRLLRPA--VGEIFVDELHLAR 283
Cdd:pfam00055 151 CTSEYSDISPLTGGEVIFST------LEGRPSANIF------DYSPELQDWLTATNIRIRLLRLHtlGDELLDDPSVLRK 218

                         250
                  ....*....|..
gi 54312078   284 YFYAISDIKVRG 295
Cdd:pfam00055 219 YYYAISDISVGG 230
LamNT smart00136
Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related ...
 71-295 3.24e-41

Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.


Pssm-ID: 214532  Cd Length: 238  Bit Score: 146.35  E-value: 3.24e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078     71 TCGDP-PETFCAMgNPYMCNNE----CDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKplQVNITLSWSKTIELT 145
Cdd:smart00136  25 TCGEPgPERYCKL-VGHTEQGKkcdyCDARNPRRSHPAENLTDGNNPNNPTWWQSEPLSNGPQ--NVNLTLDLGKEFHVT 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078    146 dNIVITFESGRPDQMILEKSlDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTvlEIICTEEYSTGYTTNSKIIHFEI 225
Cdd:smart00136 102 -YVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNED--EVICTSEYSDIVPLEGGEIAFSL 177

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 54312078    226 KDrfaffAGPRLRNmaslygqLDTTKKLRDFFTVTDLRIRLLRPAV--GEIFVDELH-LARYFYAISDIKVRG 295
Cdd:smart00136 178 LE-----GRPSATD-------FDNSPVLQEWVTATNIRVRLTRLRTlgDELMDDRPEvTRRYYYAISDIAVGG 238
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 296-342 3.58e-08

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 49.66  E-value: 3.58e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 54312078 296 RCKCNLHATVCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
Cdd:cd00055   1 PCDCNGHGSLSGQcDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGG 48
Laminin_EGF pfam00053
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
 297-341 1.42e-05

Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.


Pssm-ID: 395007  Cd Length: 49  Bit Score: 41.96  E-value: 1.42e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 54312078   297 CKCNLHATV---CvyDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPG 341
Cdd:pfam00053   1 CDCNPHGSLsdtC--DPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPP 46
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
297-338 4.93e-04

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 37.68  E-value: 4.93e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 54312078    297 CKCNLHATVCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Cdd:smart00180   1 CDCDPGGSASGTcDPDTGQCECKPNVTGRRCDRCAPGYYGDGP 43
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 373-397 1.09e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 1.09e-03
                        10        20
                ....*....|....*....|....*...
gi 54312078 373 CQNGGTCHNNV---RCLCPAAYTGILCE 397
Cdd:cd00054  11 CQNGGTCVNTVgsyRCSCPPGYTGRNCE 38
 
Name Accession Description Interval E-value
Laminin_N pfam00055
Laminin N-terminal (Domain VI);
50-295 1.81e-78

Laminin N-terminal (Domain VI);


Pssm-ID: 459653  Cd Length: 230  Bit Score: 242.87  E-value: 1.81e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078    50 CQPESTDMTKYLKVKldpPDITCG-DPPETFCAMGNP---YMCNnECDASTPELAHPPELMFDFEGRHPSTFWQSATWke 125
Cdd:pfam00055   1 CYPAFGNLAFGREVS---ATSTCGlNGPERYCILSGLeggKKCF-ICDSRDPHNSHPPSNLTDSNNGTNETWWQSETG-- 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078   126 YPKPLQVNITLSWSKTIELTDnIVITFESGRPDQMILEKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHtvlEII 205
Cdd:pfam00055  75 VIQYENVNLTLDLGKEFHFTY-LILKFKSPRPAAMVLERSTDFGKTWQPYQYFASDCRRTFGRPSGPSRGIKDD---EVI 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078   206 CTEEYSTGYTTNSKIIHFEIkdrfafFAGPRLRNMAslygqlDTTKKLRDFFTVTDLRIRLLRPA--VGEIFVDELHLAR 283
Cdd:pfam00055 151 CTSEYSDISPLTGGEVIFST------LEGRPSANIF------DYSPELQDWLTATNIRIRLLRLHtlGDELLDDPSVLRK 218

                         250
                  ....*....|..
gi 54312078   284 YFYAISDIKVRG 295
Cdd:pfam00055 219 YYYAISDISVGG 230
LamNT smart00136
Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related ...
 71-295 3.24e-41

Laminin N-terminal domain (domain VI); N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.


Pssm-ID: 214532  Cd Length: 238  Bit Score: 146.35  E-value: 3.24e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078     71 TCGDP-PETFCAMgNPYMCNNE----CDASTPELAHPPELMFDFEGRHPSTFWQSATWKEYPKplQVNITLSWSKTIELT 145
Cdd:smart00136  25 TCGEPgPERYCKL-VGHTEQGKkcdyCDARNPRRSHPAENLTDGNNPNNPTWWQSEPLSNGPQ--NVNLTLDLGKEFHVT 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54312078    146 dNIVITFESGRPDQMILEKSlDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTvlEIICTEEYSTGYTTNSKIIHFEI 225
Cdd:smart00136 102 -YVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKGNED--EVICTSEYSDIVPLEGGEIAFSL 177

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 54312078    226 KDrfaffAGPRLRNmaslygqLDTTKKLRDFFTVTDLRIRLLRPAV--GEIFVDELH-LARYFYAISDIKVRG 295
Cdd:smart00136 178 LE-----GRPSATD-------FDNSPVLQEWVTATNIRVRLTRLRTlgDELMDDRPEvTRRYYYAISDIAVGG 238
EGF_Lam cd00055
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ...
 296-342 3.58e-08

Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies


Pssm-ID: 238012  Cd Length: 50  Bit Score: 49.66  E-value: 3.58e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 54312078 296 RCKCNLHATVCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
Cdd:cd00055   1 PCDCNGHGSLSGQcDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGG 48
Laminin_EGF pfam00053
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
 297-341 1.42e-05

Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.


Pssm-ID: 395007  Cd Length: 49  Bit Score: 41.96  E-value: 1.42e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 54312078   297 CKCNLHATV---CvyDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPG 341
Cdd:pfam00053   1 CDCNPHGSLsdtC--DPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPP 46
EGF_Lam smart00180
Laminin-type epidermal growth factor-like domai;
297-338 4.93e-04

Laminin-type epidermal growth factor-like domai;


Pssm-ID: 214543  Cd Length: 46  Bit Score: 37.68  E-value: 4.93e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 54312078    297 CKCNLHATVCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Cdd:smart00180   1 CDCDPGGSASGTcDPDTGQCECKPNVTGRRCDRCAPGYYGDGP 43
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 373-397 1.09e-03

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 1.09e-03
                        10        20
                ....*....|....*....|....*...
gi 54312078 373 CQNGGTCHNNV---RCLCPAAYTGILCE 397
Cdd:cd00054  11 CQNGGTCVNTVgsyRCSCPPGYTGRNCE 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH