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Conserved domains on  [gi|40548372|ref|NP_057114|]
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trafficking protein particle complex subunit 12 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 542-687 2.77e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 2.77e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 621
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 40548372 622 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 687
Cdd:COG4783  74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PHA03169 super family cl27451
hypothetical protein; Provisional
 3-174 1.07e-07

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PHA03169:

Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.98  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169  92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                        170       180
                 ....*....|....*....|...
gi 40548372  152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169 246 PFPGHRSHSYTVVGWKPSTRPGG 268
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
93-264 1.15e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372  171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003 435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                        170
                 ....*....|....*.
gi 40548372  249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003 511 RAPAAASREDAPAAAA 526
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 542-687 2.77e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 2.77e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 621
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 40548372 622 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 687
Cdd:COG4783  74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PHA03169 PHA03169
hypothetical protein; Provisional
 3-174 1.07e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.98  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169  92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                        170       180
                 ....*....|....*....|...
gi 40548372  152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169 246 PFPGHRSHSYTVVGWKPSTRPGG 268
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 549-608 9.53e-05

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.27  E-value: 9.53e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 40548372   549 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 608
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-264 1.15e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372  171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003 435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                        170
                 ....*....|....*.
gi 40548372  249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003 511 RAPAAASREDAPAAAA 526
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 542-687 2.77e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.97  E-value: 2.77e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIM 621
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEA------LELDPDEPE 73

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 40548372 622 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH 687
Cdd:COG4783  74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
546-702 1.40e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.17  E-value: 1.40e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 546 RVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMN 625
Cdd:COG0457   9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AEALNN 81

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 40548372 626 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 702
Cdd:COG0457  82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA---DALYNLGIALE 155
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 537-726 5.41e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 5.41e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 537 IRLWRSRLGR------VMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVT 610
Cdd:COG2956  62 IRIHQKLLERdpdraeALLELAQDYLKAGLLDRAEELLEKLLELDPDD-AEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 611 QKldglqgKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlh 690
Cdd:COG2956 141 PE------NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL-- 212

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 40548372 691 eSVLFNLTTMYElESSRSMQKKQALLEAVAGKEGDS 726
Cdd:COG2956 213 -PALPRLAELYE-KLGDPEEALELLRKALELDPSDD 246
PHA03169 PHA03169
hypothetical protein; Provisional
 3-174 1.07e-07

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 54.98  E-value: 1.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEEtiDLGGDEFGSEENETASEGSSPlaDKLNEHMMESVliSDSPNSEGDA 82
Cdd:PHA03169  92 PSGSGSESVGSPTPSPSGSAEELASGLSPENT--SGSSPESPASHSPPPSPPSHP--GPHEPAPPESH--NPSPNQQPSS 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   83 GDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPG----------SEAARPEQE-P 151
Cdd:PHA03169 166 FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSpntqqaveheDEPTEPEREgP 245

                        170       180
                 ....*....|....*....|...
gi 40548372  152 PVAEPVPVCTIFSQRAPPASGDG 174
Cdd:PHA03169 246 PFPGHRSHSYTVVGWKPSTRPGG 268
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
546-718 1.74e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 1.74e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 546 RVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvtQKLDGLQGKIMVLMN 625
Cdd:COG0457  43 EALYNLGLAYLRLGRYEEALADYEQALELDPDD-AEALNNLGLALQALGRYEEALEDYD------KALELDPDDAEALYN 115

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 626 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYLHESVLFNLTTMYELES 705
Cdd:COG0457 116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195

                       170
                ....*....|...
gi 40548372 706 SRSMQKKQALLEA 718
Cdd:COG0457 196 LLALLLALEQALR 208
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 549-691 7.57e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 7.57e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 549 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKldglqgKIMVLMNSAF 628
Cdd:COG2956  12 YFKGLNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQ 84

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 40548372 629 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPR--HYLHE 691
Cdd:COG2956  85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnaHAYCE 149
PHA03264 PHA03264
envelope glycoprotein D; Provisional
 91-205 1.21e-05

envelope glycoprotein D; Provisional


Pssm-ID: 223029 [Multi-domain]  Cd Length: 416  Bit Score: 48.46  E-value: 1.21e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   91 EAEPGGEGDPGPEpAGTPSPSGEADGDcAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPvAEPVPvctifsqrAPPA 170
Cdd:PHA03264 259 EESKGYEPPPAPS-GGSPAPPGDDRPE-AKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAG-GEPKP--------GPPR 327

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 40548372  171 SGdgfePQMVKsPSFGGASEASARTPPQVVQPSPS 205
Cdd:PHA03264 328 PA----PDADR-PEGWPSLEAITFPPPTPATPAVP 357
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 553-651 4.33e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 4.33e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 553 NCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVekvtqkLDGLQGKIMVLMNSAFLHLG 632
Cdd:COG5010  62 NLYNKLGDFEESLALLEQALQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKA------LALSPDNPNAYSNLAALLLS 134

                        90
                ....*....|....*....
gi 40548372 633 QNNFAEAHRFFTEILRMDP 651
Cdd:COG5010 135 LGQDDEAKAALQRALGTSP 153
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 542-608 4.39e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 4.39e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40548372 542 SRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 608
Cdd:COG1729  27 PLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkaPDALLKLGLSYLELGDYDKARATLEELIK 95
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-202 7.12e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 7.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    4 AGGGEETPAP-------EAPHPPQLAPPEEQGllfqeetidlggdefGSEENETASEGSSPLADKLNEHMMESVLISDSP 76
Cdd:PRK07764 594 AAGGEGPPAPassgppeEAARPAAPAAPAAPA---------------APAPAGAAAAPAEASAAPAPGVAAPEHHPKHVA 658

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   77 NSEGDAGDLGRVRDEAEPGGEGD-PGPEPAGTPSPSGEADGDCAPEDAA-------PSSGGAPR---QDAAREVPGSEAA 145
Cdd:PRK07764 659 VPDASDGGDGWPAKAGGAAPAAPpPAPAPAAPAAPAGAAPAQPAPAPAAtppagqaDDPAAQPPqaaQGASAPSPAADDP 738

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 40548372  146 RPEQEPPVAEPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQP 202
Cdd:PRK07764 739 VPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 74-208 7.49e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 7.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   74 DSPNSEGDAGDLGRVRDEAEPGG--EGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEP 151
Cdd:PRK07764 630 AGAAAAPAEASAAPAPGVAAPEHhpKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 40548372  152 PVA-------EPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLST 208
Cdd:PRK07764 710 PAGqaddpaaQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 549-608 9.53e-05

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 42.27  E-value: 9.53e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 40548372   549 YSMANCLLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEK 608
Cdd:TIGR02795  41 YWLGEAYYAQGDYADAAKAFLAVVKKYPKSPkaPDALLKLGMSLQELGDKEKAKATLQQVIK 102
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 530-720 1.16e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 1.16e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 530 QEGRQASIRLWRSRLGRVMYSMANCLLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDVEKV 609
Cdd:COG3914  63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD-NAEALFNLGNLLLALGRLEEALAALRRALAL 141

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 610 TQKLdglqgkIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRH-Y 688
Cdd:COG3914 142 NPDF------AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNaD 215

                       170       180       190
                ....*....|....*....|....*....|..
gi 40548372 689 LHESVLFnltTMYELESSRSMQKKQALLEAVA 720
Cdd:COG3914 216 AHSNLLF---ALRQACDWEVYDRFEELLAALA 244
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 89-205 1.76e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   89 RDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAP 168
Cdd:PRK07764 377 RLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 40548372  169 PASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPS 205
Cdd:PRK07764 457 PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493
PHA03379 PHA03379
EBNA-3A; Provisional
 1-204 2.59e-04

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 44.66  E-value: 2.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    1 MEDAGGGEET----------PAPEAPHPPQLAPPEEqgLLFQEETIDLGGDEFGSEENETASEGSSPLADklnEHMMESV 70
Cdd:PHA03379 391 LMRAGKLTERarealekasePTYGTPRPPVEKPRPE--VPQSLETATSHGSAQVPEPPPVHDLEPGPLHD---QHSMAPC 465

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   71 LISDSPNS---EGDAGDLgrvrdeaEPGGEGDPGPEPAGTPSPSGEAdgdCAPEDAAPSsggaprqdaarEVPGSEAARP 147
Cdd:PHA03379 466 PVAQLPPGplqDLEPGDQ-------LPGVVQDGRPACAPVPAPAGPI---VRPWEASLS-----------QVPGVAFAPV 524

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 40548372  148 EQEPPVAEPVPVCTIFSQR----APPA---SGDGfEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PHA03379 525 MPQPMPVEPVPVPTVALERpvcpAPPLiamQGPG-ETSGIVRVRERWRPAPWTPNPPRSPSQMS 587
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 555-651 2.61e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.13  E-value: 2.61e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 555 LLLMKDYVLAVEAYHSVIKYYPEQE--PQLLSGIGRISLQIGDIKTAEKYFQDVEKV---TQKLDglqgkiMVLMNSAFL 629
Cdd:COG1729   3 LLKAGDYDEAIAAFKAFLKRYPNSPlaPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAP------DALLKLGLS 76

                        90       100
                ....*....|....*....|..
gi 40548372 630 HLGQNNFAEAHRFFTEILRMDP 651
Cdd:COG1729  77 YLELGDYDKARATLEELIKKYP 98
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
554-652 2.75e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.54  E-value: 2.75e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 554 CLLLMKDYVLAVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQdvekvTQKLDglQGKIMVLMNSAFLHLGQ 633
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDN-ADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAELLLEL 72

                        90
                ....*....|....*....
gi 40548372 634 NNFAEAHRFFTEILRMDPR 652
Cdd:COG3063  73 GDYDEALAYLERALELDPS 91
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 91-206 3.31e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.21  E-value: 3.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   91 EAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAPPA 170
Cdd:PRK07764 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 40548372  171 SGDGfEPQMVKSPSFGGASEASARTPPQVVQPSPSL 206
Cdd:PRK07764 473 APEP-TAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
PHA03247 PHA03247
large tegument protein UL36; Provisional
 10-221 5.16e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 5.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    10 TPAPEAPHPPQLAPPEEQGLLFQEEtidlGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDS---------PNSEG 80
Cdd:PHA03247 2615 SPLPPDTHAPDPPPPSPSPAANEPD----PHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQAssppqrprrRAARP 2690

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    81 DAGDLGRVRDEAEPGGEGDPGPEPA--GTPSPSGEADGDCAPEdAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVP 158
Cdd:PHA03247 2691 TVGSLTSLADPPPPPPTPEPAPHALvsATPLPPGPAAARQASP-ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 40548372   159 vctifsqrAPPASGDGFEPQMVKSPSFGGASEASArTPPQVVQPSPSLSTFFGDTAASHSLAS 221
Cdd:PHA03247 2770 --------APPAAPAAGPPRRLTRPAVASLSESRE-SLPSPWDPADPPAAVLAPAAALPPAAS 2823
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
591-688 5.18e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 5.18e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 591 LQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNSAFLHLGQNNFAEAHRFfTEILRMDPRNAVANNNAAVCLLYLGKL 670
Cdd:COG3063   3 LKLGDLEEAEEYYEKA----LELDP--DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDY 75

                        90
                ....*....|....*...
gi 40548372 671 KDSLRQLEAMVQQDPRHY 688
Cdd:COG3063  76 DEALAYLERALELDPSAL 93
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 555-735 6.09e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 6.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   555 LLLMKDYVLAVEAYHSVIKYYPEqEPQLLSGIGRISLQIGDIKTAEKYFQDV-EKVTQKLDGLQGKIMVlmnsaflHLGQ 633
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPN-NIAVLLALATILIEAGEFEEAEKHADALlKKAPNSPLAHYLKALV-------DFQK 274

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   634 NNFAEAHRFFTEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRhyLHESVLfnLTTMYELESSRSMQkKQ 713
Cdd:TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN--SHQARR--LLASIQLRLGRVDE-AI 349

                         170       180
                  ....*....|....*....|..
gi 40548372   714 ALLEAVAGKegDSFNTQCLKLA 735
Cdd:TIGR02917 350 ATLSPALGL--DPDDPAALSLL 369
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
5-205 1.01e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 1.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    5 GGGEETPAPEAPHPPQLAPPEEQGllfqeetidlggdEFGSEENETASEGSSPLADKLNEhMMESVLISDSPNSEGDAGd 84
Cdd:PRK12323 368 SGGGAGPATAAAAPVAQPAPAAAA-------------PAAAAPAPAAPPAAPAAAPAAAA-AARAVAAAPARRSPAPEA- 432

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   85 LGRVRDEAEPGGEGDPGPEPAGTPSPSGeadgdcAPEDAAPSSGGAPRQDA---AREVPGSEAARPEQEPPVAEPVPVCt 161
Cdd:PRK12323 433 LAAARQASARGPGGAPAPAPAPAAAPAA------AARPAAAGPRPVAAAAAaapARAAPAAAPAPADDDPPPWEELPPE- 505

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 40548372  162 iFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSPS 205
Cdd:PRK12323 506 -FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAA 548
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
93-264 1.15e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 1.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   93 EPGGEGDPGPEPAGTPSPSGEADgdcAPEDAAPSSGGAPRQDAAREVPG--SEAARPEQEPPVAEPVPVCTIfSQRAPPA 170
Cdd:PRK07003 359 EPAVTGGGAPGGGVPARVAGAVP---APGARAAAAVGASAVPAVTAVTGaaGAALAPKAAAAAAATRAEAPP-AAPAPPA 434

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372  171 SGDGFEPQMVKSPSF--GGASEASARTPPQVVQPSPSLSTFFGDTAASHSLASDFFDSFTTSAFISVSnpgaGSPAPASP 248
Cdd:PRK07003 435 TADRGDDAADGDAPVpaKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA----TPAAVPDA 510

                        170
                 ....*....|....*.
gi 40548372  249 PPLAVPGTEGRPEPVA 264
Cdd:PRK07003 511 RAPAAASREDAPAAAA 526
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 12-217 1.59e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    12 APEAPHPPQLAPPEEQGLLFQEETIDLGGDEFGSEENETASEGSSPLADKLNEHMMESVLISDSPNSEGDAGDLGRVRDE 91
Cdd:PHA03307   18 GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAP 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    92 AEPGGEGDPGPEPAGTPSPsgeadgdcaPEDAAPSSGGAPRQDAARevpgSEAARPEQEPPVAepvpvctifSQRAPPAS 171
Cdd:PHA03307   98 ASPAREGSPTPPGPSSPDP---------PPPTPPPASPPPSPAPDL----SEMLRPVGSPGPP---------PAASPPAA 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 40548372   172 GDGFEPQMVKSPSFGGASEASARTPPQVVQPSPSLSTFFGDTAASH 217
Cdd:PHA03307  156 GASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA 201
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 73-204 1.87e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.51  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   73 SDSPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSG----GAPRQDAAREVPGSEAARPE 148
Cdd:PRK07764 641 AAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAapaqPAPAPAATPPAGQADDPAAQ 720

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 40548372  149 QEPPVAEPVPVCTiFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PRK07764 721 PPQAAQGASAPSP-AADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 3-330 1.87e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372     3 DAGGGEETPAPEAPHPPQLAPPEEQGLLFQEETIDLGGDEFGSEENETASEGSSPLAdklnehmmesvliSDSPNSEGDA 82
Cdd:PHA03307  107 TPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA-------------SDAASSRQAA 173

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    83 GDLGRVRDEAEPGGegdPGPEPAGTPSPSGEADGDCAPED-----AAPSSGGAPRQDAAREVPG-------SEAARPEQE 150
Cdd:PHA03307  174 LPLSSPEETARAPS---SPPAEPPPSTPPAAASPRPPRRSspisaSASSPAPAPGRSAADDAGAsssdsssSESSGCGWG 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   151 PPVAEPVPVCTIFSQRAPPASGDGFEPQMVKSPSFGGASEASARTPPqvvqPSPSLSTFFGDTAASHSLASDFFDSFTTS 230
Cdd:PHA03307  251 PENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS----PSPSSPGSGPAPSSPRASSSSSSSRESSS 326

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   231 AFISVSNPGAGSPAPASPPPLAVPGTEGRPEPVAMRGPQAAAPPASPEPFAhiQAVFAGSDDPFATALSMSEMDRRNDAw 310
Cdd:PHA03307  327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSS--PAASAGRPTRRRARAAVAGRARRRDA- 403

                         330       340
                  ....*....|....*....|
gi 40548372   311 lPGEATRGVLRAVATQQRGA 330
Cdd:PHA03307  404 -TGRFPAGRPRPSPLDAGAA 422
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 92-209 1.95e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 41.09  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   92 AEPGGEGDPGPEPAGtpspSGEADGDCAPedAAPSSggAPR-------QDAAREVPGSEAARPEQEPPVAEPVPVCTIF- 163
Cdd:PHA03291 164 AAFPAEGTLAAPPLG----EGSADGSCDP--ALPLS--APRlgpadvfVPATPRPTPRTTASPETTPTPSTTTSPPSTTi 235

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 40548372  164 -----SQRAPPASGDGFEPQMVKSPSFGGaseasARTPPQVVQPSPSLSTF 209
Cdd:PHA03291 236 papstTIAAPQAGTTPEAEGTPAPPTPGG-----GEAPPANATPAPEASRY 281
PHA03378 PHA03378
EBNA-3B; Provisional
 82-204 2.43e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.21  E-value: 2.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   82 AGDLGRVRdeaEPGGEGDPGPEPAGTPS---PSGEADGDCAPEDAAPssgGAPRQDAAREVPGSEAARPE-----QEPPV 153
Cdd:PHA03378 728 AAAPGRAR---PPAAAPGRARPPAAAPGrarPPAAAPGRARPPAAAP---GAPTPQPPPQAPPAPQQRPRgaptpQPPPQ 801

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372  154 AEPVPVctIFSQRAPPASgDGFEPQMVKSPSFGGASE---------ASARTPPQVVQPSP 204
Cdd:PHA03378 802 AGPTSM--QLMPRAAPGQ-QGPTKQILRQLLTGGVKRgrpslkkpaALERQAAAGPTPSP 858
PHA03169 PHA03169
hypothetical protein; Provisional
 75-151 2.52e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 41.11  E-value: 2.52e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 40548372   75 SPNSEGDAGDLGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEdaAPSSGGAPRQDAAREVPGSEAARPEQEP 151
Cdd:PHA03169  83 EKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE--SPASHSPPPSPPSHPGPHEPAPPESHNP 157
PRK12495 PRK12495
hypothetical protein; Provisional
 75-194 2.66e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 39.85  E-value: 2.66e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   75 SPNSEGDAGDlGRVRDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAA---RPEQEP 151
Cdd:PRK12495  66 QPVTEDGAAG-DDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAardGPTPDP 144

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 40548372  152 PVAEPVPVCTIFSQRAPPASGDGFEPQmvKSPSFGGASEASAR 194
Cdd:PRK12495 145 TAQPATPDERRSPRQRPPVSGEPPTPS--TPDAHVAGTLQAAR 185
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 84-174 2.80e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 41.08  E-value: 2.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   84 DLGRVRDEAEPGGEGDPgPEPAGTPSPSGEAdgdcAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIF 163
Cdd:PRK14954 372 ELVRNDGGVAPSPAGSP-DVKKKAPEPDLPQ----PDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSP 446

                         90
                 ....*....|.
gi 40548372  164 SQRAPPASGDG 174
Cdd:PRK14954 447 QASAPRNVASG 457
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 564-685 3.25e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 3.25e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 564 AVEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVekvtQKLDGlqGKIMVLMNSAFLHLGQNNFAEAHRFF 643
Cdd:COG4235   2 AIARLRQALAANPND-AEGWLLLGRAYLRLGRYDEALAAYEKA----LRLDP--DNADALLDLAEALLAAGDTEEAEELL 74

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 40548372 644 TEILRMDPRNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDP 685
Cdd:COG4235  75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 100-212 4.78e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 4.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372  100 PGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPVCTIFSQRAPPASGDGFEPQM 179
Cdd:PRK14951 383 RPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAI 462

                         90       100       110
                 ....*....|....*....|....*....|...
gi 40548372  180 VKSPSFGGASEASARTPPQVVQPSPSLSTFFGD 212
Cdd:PRK14951 463 PVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495
PHA03169 PHA03169
hypothetical protein; Provisional
 2-132 5.03e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 5.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    2 EDAGGGEETPAPEAPHPPQLAPPEEQGllfqeETIDlGGDEFGSEENETASEGSSPladklnehmmesvlisdspnSEGD 81
Cdd:PHA03169 176 EEPEPPTSEPEPDSPGPPQSETPTSSP-----PPQS-PPDEPGEPQSPTPQQAPSP--------------------NTQQ 229

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 40548372   82 AGDlgrvrDEAEPGGEGDPGPEPAGTPSPSGEADGDCAPEDAapssGGAPR 132
Cdd:PHA03169 230 AVE-----HEDEPTEPEREGPPFPGHRSHSYTVVGWKPSTRP----GGVPK 271
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
545-613 6.06e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 6.06e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 40548372 545 GRVMYSMANCLLLMKDYVLAvEAYHSVIKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKL 613
Cdd:COG3063  26 ADALNNLGLLLLEQGRYDEA-IALEKALKLDPNN-AEALLNLAELLLELGDYDEALAYLERALELDPSA 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
572-702 6.50e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.83  E-value: 6.50e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372 572 IKYYPEQePQLLSGIGRISLQIGDIKTAEKYFQDVEKVTQKLdglqgkIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 651
Cdd:COG0457   1 LELDPDD-AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD------AEALYNLGLAYLRLGRYEEALADYEQALELDP 73

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|.
gi 40548372 652 RNAVANNNAAVCLLYLGKLKDSLRQLEAMVQQDPRHYlheSVLFNLTTMYE 702
Cdd:COG0457  74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDA---EALYNLGLALL 121
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 90-204 7.32e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.58  E-value: 7.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372   90 DEAEPGGEGDPGPEPAGTPSPSGE-ADGDCAPEDAAPSSGGAPRQdaarevPGSEAARPEQEPPVAEPVPvctifSQRAP 168
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARpAAPAAPAAPAAPAPAGAAAA------PAEASAAPAPGVAAPEHHP-----KHVAV 659

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 40548372  169 PASGDGFEPQMVKSPSFGGASEASARTPPQVVQPSP 204
Cdd:PRK07764 660 PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695
PHA03247 PHA03247
large tegument protein UL36; Provisional
 94-229 9.34e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.54  E-value: 9.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 40548372    94 PGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPVAEPVPvctifsqRAPPASGD 173
Cdd:PHA03247 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR-------RLTRPAVA 2789

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 40548372   174 GFEPQMVKSPSFGGASEASARTP------PQVVQPSPSLSTFFGDTAASHSLASDFFDSFTT 229
Cdd:PHA03247 2790 SLSESRESLPSPWDPADPPAAVLapaaalPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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