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Conserved domains on  [gi|62198215|ref|NP_058691|]
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C4b-binding protein beta chain precursor [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02927 super family cl33700
secreted complement-binding protein; Provisional
 44-194 7.72e-23

secreted complement-binding protein; Provisional


The actual alignment was detected with superfamily member PHA02927:

Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 93.95  E-value: 7.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   44 YLCIKGYHLVGKKSLVFDPSKEWNATLPECLLGHCPDPV-LENGKINSSGpVNISGKIMFECNDGYILKGSNWSQCLEDH 122
Cdd:PHA02927  52 YLCLPGYRKQKMGPIYAKCTGTGWTLFNQCIKRRCPSPRdIDNGQLDIGG-VDFGSSITYSCNSGYQLIGESKSYCELGS 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62198215  123 T----WAPPLPICRSRDCEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQCSDGEWSPSyPTCESIQEP 194
Cdd:PHA02927 131 TgsmvWNPEAPICESVKCQSPPSISNGRHNGyeDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP-PTCQIVKCP 207
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 44-194 7.72e-23

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 93.95  E-value: 7.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   44 YLCIKGYHLVGKKSLVFDPSKEWNATLPECLLGHCPDPV-LENGKINSSGpVNISGKIMFECNDGYILKGSNWSQCLEDH 122
Cdd:PHA02927  52 YLCLPGYRKQKMGPIYAKCTGTGWTLFNQCIKRRCPSPRdIDNGQLDIGG-VDFGSSITYSCNSGYQLIGESKSYCELGS 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62198215  123 T----WAPPLPICRSRDCEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQCSDGEWSPSyPTCESIQEP 194
Cdd:PHA02927 131 TgsmvWNPEAPICESVKCQSPPSISNGRHNGyeDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP-PTCQIVKCP 207
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 136-189 2.50e-13

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 62.87  E-value: 2.50e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 62198215 136 CEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQC-SDGEWSPSYPTCE 189
Cdd:cd00033   1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 136-188 8.87e-12

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.69  E-value: 8.87e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 62198215    136 CEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQC-SDGEWSPSYPTC 188
Cdd:smart00032   1 CPPPPDIENGTVTSssGTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
136-188 1.07e-10

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 55.97  E-value: 1.07e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 62198215   136 CEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQCS-DGEWSPSYPTC 188
Cdd:pfam00084   1 CPPPPDIPNGKVSAtkNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSPPFPEC 56
 
Name Accession Description Interval E-value
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 44-194 7.72e-23

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 93.95  E-value: 7.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   44 YLCIKGYHLVGKKSLVFDPSKEWNATLPECLLGHCPDPV-LENGKINSSGpVNISGKIMFECNDGYILKGSNWSQCLEDH 122
Cdd:PHA02927  52 YLCLPGYRKQKMGPIYAKCTGTGWTLFNQCIKRRCPSPRdIDNGQLDIGG-VDFGSSITYSCNSGYQLIGESKSYCELGS 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 62198215  123 T----WAPPLPICRSRDCEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQCSDGEWSPSyPTCESIQEP 194
Cdd:PHA02927 131 TgsmvWNPEAPICESVKCQSPPSISNGRHNGyeDFYTDGSVVTYSCNSGYSLIGNSGVLCSGGEWSDP-PTCQIVKCP 207
PHA02639 PHA02639
EEV host range protein; Provisional
 20-188 9.46e-15

EEV host range protein; Provisional


Pssm-ID: 165022 [Multi-domain]  Cd Length: 295  Bit Score: 72.39  E-value: 9.46e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   20 CSEPPPVNNSvFVGKETEEQILGI---YLCIKGYHLVGKK--SLVFDPSKE-WNATLPECLLGHCPDP-VLENGKI-NSS 91
Cdd:PHA02639  22 CDKPDDISNG-FITELMEKYEIGKlieYTCNTDYALIGDRfrTCIKDKNNAiWSNKAPFCMLKECNDPpSIINGKIyNKR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   92 GPVNISGKIMFECND----GYILKGSNWSQCLEDHTWAPPLPICRSRDCEPPETPvHGYFEG----ETFTSGSVVTYYCE 163
Cdd:PHA02639 101 EMYKVGDEIYYVCNEhkgvQYSLVGNEKITCIQDKSWKPDPPICKMINCRFPALQ-NGYINGipsnKKFYYKTRVGFSCK 179

                        170       180
                 ....*....|....*....|....*.
gi 62198215  164 DGYHLVGTQKVQCS-DGEWSPSYPTC 188
Cdd:PHA02639 180 SGFDLVGEKYSTCNiNATWFPSIPTC 205
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 136-189 2.50e-13

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 62.87  E-value: 2.50e-13
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 62198215 136 CEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQC-SDGEWSPSYPTCE 189
Cdd:cd00033   1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCtENGGWSPPPPTCE 57
PHA02817 PHA02817
EEV Host range protein; Provisional
 1-135 1.56e-12

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 64.96  E-value: 1.56e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215    1 MLCLVVCCLIWLISALDGSCSEPPPVNNSVFVGKETEEQILGI-YLCIKG-----YHLVGKKSLVFDPSKEWNATLPECL 74
Cdd:PHA02817   6 MLLILLCNKVYSLCDLNKCCYPPSIKNGYIYNKKTEYNIGSNVtFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCK 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 62198215   75 LGHCPDPVLENGKIN---SSGPVNISGKIMFECNDGYILKGSNWSQCLEDHTWAPPLPICRSRD 135
Cdd:PHA02817  86 IIRCRFPALQNGFVNgipDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSRDN 149
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 44-188 3.65e-12

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 64.67  E-value: 3.65e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   44 YLCIKGYHLVGKK----SLVFDPSKEWNATLPECLLGHCPDP-VLENGKINSSGPVNISGKIM-FECNDGYILKGSNWSQ 117
Cdd:PHA02927 110 YSCNSGYQLIGESksycELGSTGSMVWNPEAPICESVKCQSPpSISNGRHNGYEDFYTDGSVVtYSCNSGYSLIGNSGVL 189

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 62198215  118 ClEDHTWAPPlPICRSRDCEPPeTPVHGYFEG---ETFTSGSVVTYYCEDGYHLVGTQKVQCSDGE-WSPSYPTC 188
Cdd:PHA02927 190 C-SGGEWSDP-PTCQIVKCPHP-TISNGYLSSgfkRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNtWQPELPKC 261
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 136-188 8.87e-12

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 58.69  E-value: 8.87e-12
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 62198215    136 CEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQC-SDGEWSPSYPTC 188
Cdd:smart00032   1 CPPPPDIENGTVTSssGTYSYGDTVTYSCDPGYTLIGSSTITClENGTWSPPPPTC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 20-131 2.95e-11

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 61.98  E-value: 2.95e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   20 CSEPPPVNNSVFVGKE---TEEQILgIYLCIKGYHLVGKkSLVFDPSKEWNATlPECLLGHCPDPVLENGKINSSGPVNI 96
Cdd:PHA02927 148 CQSPPSISNGRHNGYEdfyTDGSVV-TYSCNSGYSLIGN-SGVLCSGGEWSDP-PTCQIVKCPHPTISNGYLSSGFKRSY 224

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 62198215   97 S--GKIMFECNDGYILKGSNWSQCLEDHTWAPPLPIC 131
Cdd:PHA02927 225 SynDNVDFKCKYGYKLSGSSSSTCSPGNTWQPELPKC 261
Sushi pfam00084
Sushi repeat (SCR repeat);
136-188 1.07e-10

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 55.97  E-value: 1.07e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 62198215   136 CEPPETPVHGYFEG--ETFTSGSVVTYYCEDGYHLVGTQKVQCS-DGEWSPSYPTC 188
Cdd:pfam00084   1 CPPPPDIPNGKVSAtkNEYNYGASVSYECDPGYRLVGSPTITCQeDGTWSPPFPEC 56
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 78-132 3.84e-10

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 54.39  E-value: 3.84e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 62198215  78 CPDP-VLENGKIN-SSGPVNISGKIMFECNDGYILKGSNWSQCLEDHTWAPPLPICR 132
Cdd:cd00033   1 CPPPpVPENGTVTgSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 78-131 8.81e-10

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 53.30  E-value: 8.81e-10
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 62198215     78 CPDP-VLENGKINSSGPVNISG-KIMFECNDGYILKGSNWSQCLEDHTWAPPLPIC 131
Cdd:smart00032   1 CPPPpDIENGTVTSSSGTYSYGdTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 66-224 6.10e-08

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 52.40  E-value: 6.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   66 WNATLpECLLGHCPDPVLENGkinSSGPV----NISGKIMFECNDGYILKGSNWSQCLEDhTWAPpLPICRSRdCEPPET 141
Cdd:PHA02954 119 WNDTV-TCPNAECQPLQLEHG---SCQPVkekySFGEHITINCDVGYEVIGASYISCTAN-SWNV-IPSCQQK-CDIPSL 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215  142 PvHGYFEGETFTSGSVVTYYCEDGYHLVGTQKVQCSDGEWSPSYPTCESIQE--------PPKSAEQSALEKAILAFQES 213
Cdd:PHA02954 192 S-NGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTCIDGKWNPVLPICVRSNEefdpvddgPDDETDLSKLSKDVVQYEQE 270

                        170
                 ....*....|.
gi 62198215  214 KDLCNATENFV 224
Cdd:PHA02954 271 IESLEATYHII 281
PHA02831 PHA02831
EEV host range protein; Provisional
 99-214 6.54e-08

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 52.30  E-value: 6.54e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   99 KIMFECNDGYilkGSNWSQClEDHTWAPPLPICRSRDCEPPETPVHGYFEG--ETFTSGSVVTYYCE----DGYHLVGTQ 172
Cdd:PHA02831  45 NLEYKCNNNF---DKVFVTC-NNGSWSTKNMCIGKRNCKDPVTILNGYIKNkkDQYSFGDSVTYACKvnklEKYSIVGNE 120

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 62198215  173 KVQCSDGEWSPSYPTCESIQeppksAEQSALEKAILAFQESK 214
Cdd:PHA02831 121 TVKCINKQWVPKYPVCKLIR-----CKYPALQNGFLNVFEKK 157
Sushi pfam00084
Sushi repeat (SCR repeat);
78-131 6.87e-08

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 48.26  E-value: 6.87e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 62198215    78 CPDP-VLENGKI-NSSGPVNISGKIMFECNDGYILKGSNWSQCLEDHTWAPPLPIC 131
Cdd:pfam00084   1 CPPPpDIPNGKVsATKNEYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02831 PHA02831
EEV host range protein; Provisional
 44-131 5.18e-07

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 49.61  E-value: 5.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   44 YLC----IKGYHLVGKKSlVFDPSKEWNATLPECLLGHCPDPVLENGKINSSGPVNISGKIM-FECNDGYILKGSNWSQC 118
Cdd:PHA02831 104 YACkvnkLEKYSIVGNET-VKCINKQWVPKYPVCKLIRCKYPALQNGFLNVFEKKFYYGDIVnFKCKKGFILLGSSVSTC 182

                         90
                 ....*....|...
gi 62198215  119 LEDHTWAPPLPIC 131
Cdd:PHA02831 183 DINSIWYPGIPKC 195
PHA02817 PHA02817
EEV Host range protein; Provisional
 78-188 2.56e-06

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 47.24  E-value: 2.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   78 CPDPVLENGKI-NSSGPVNISGKIMFECNDG-----YILKGSNWSQCLEDHTWAPPLPICRSRDCEPPETP---VHGYFE 148
Cdd:PHA02817  25 CYPPSIKNGYIyNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFPALQngfVNGIPD 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 62198215  149 GETFTSGSVVTYYCEDGYHLVGTQKVQCS-DGEWSPSYPTC 188
Cdd:PHA02817 105 SKKFYYESEVSFSCKPGFVLIGTKYSVCGiNSSWIPKVPIC 145
PHA02831 PHA02831
EEV host range protein; Provisional
 77-188 1.08e-05

EEV host range protein; Provisional


Pssm-ID: 165176 [Multi-domain]  Cd Length: 268  Bit Score: 45.75  E-value: 1.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 62198215   77 HCPDPV-LENGKI-NSSGPVNISGKIMFECN----DGYILKGSNWSQCLeDHTWAPPLPICRSRDCEPPETPvHGYFEG- 149
Cdd:PHA02831  77 NCKDPVtILNGYIkNKKDQYSFGDSVTYACKvnklEKYSIVGNETVKCI-NKQWVPKYPVCKLIRCKYPALQ-NGFLNVf 154

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 62198215  150 -ETFTSGSVVTYYCEDGYHLVGTQKVQCS-DGEWSPSYPTC 188
Cdd:PHA02831 155 eKKFYYGDIVNFKCKKGFILLGSSVSTCDiNSIWYPGIPKC 195
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 20-73 9.15e-05

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 39.37  E-value: 9.15e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 62198215  20 CSEPPPVNNSVFVG--KETEEQILGIYLCIKGYHLVGKKSLVFDPSKEWNATLPEC 73
Cdd:cd00033   1 CPPPPVPENGTVTGskGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
PHA02817 PHA02817
EEV Host range protein; Provisional
 131-191 2.23e-04

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 41.46  E-value: 2.23e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 62198215  131 CRSRDCEPPETPVHGYF--EGETFTSGSVVTYYCEDG-----YHLVGTQKVQCS-DGEWSPSYPTCESI 191
Cdd:PHA02817  19 CDLNKCCYPPSIKNGYIynKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEkDGKWNKEFPVCKII 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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