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Conserved domains on  [gi|9845275|ref|NP_063926|]
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FK506-binding protein-like [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
212-336 1.89e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 1.89e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  212 HRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRG 291
Cdd:COG0457  12 NNLGLAYRRLGRYEEAIEDYEKALELDP--------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 9845275  292 VARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQGRKQDA 336
Cdd:COG0457  84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLAlLELGRYDEA 129
FKBP_N_2 super family cl39441
BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila ...
 95-173 8.21e-04

BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila melanogaster protein BDBT (a FK506-Binding Protein) which stimulates the DBT circadian function. The domain contains the DBT-binding site. The domain is structurally homologous to the peptidyl prolyl isomerase (PPIase) regions of FK506-binding proteins despite low sequence homology. BDBT is structurally related to the immunophilin FKBP51 and it shares a common domain organization consisting of PPIase-like and TPR domains with noncanonical immunophilins such as FKBP38 or FKBPL.


The actual alignment was detected with superfamily member pfam18023:

Pssm-ID: 375495  Cd Length: 113  Bit Score: 38.56  E-value: 8.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275     95 WYCPDGSFVKKIIVPG-HGLDKPKLGSKCQVLALGFPFGSGMPEGWTElTIGIGQWREKMWGE-------LMEKCLESMR 166
Cdd:pfam18023   1 WESADKSISKEVLSFGfQGLEKPTEVSSCIVLVENLQNVTLRKDQGLE-KYYIYEEKEIVIGEadtpideYIEILLEMMK 79


                  ....*..
gi 9845275    167 QGEEAKI 173
Cdd:pfam18023  80 LGETAEC 86
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
212-336 1.89e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 1.89e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  212 HRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRG 291
Cdd:COG0457  12 NNLGLAYRRLGRYEEAIEDYEKALELDP--------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 9845275  292 VARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQGRKQDA 336
Cdd:COG0457  84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLAlLELGRYDEA 129
TPR_1 pfam00515
Tetratricopeptide repeat;
285-317 1.83e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.95  E-value: 1.83e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 9845275    285 KALYRRGVARAALGDLEKATADFKKVLAVDPKN 317
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 260-321 2.48e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 2.48e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9845275  260 QLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAK 321
Cdd:cd24142  10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 285-317 4.11e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.12  E-value: 4.11e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 9845275     285 KALYRRGVARAALGDLEKATADFKKVLAVDPKN 317
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 200-336 3.36e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 3.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275    200 EAMEKEALAKEEHR-----RGTELFRAGNPQGAARCYGRALRLlltlpppgppERTTLYANLAACQLLLGHPQL--AAQS 272
Cdd:TIGR02917 112 ELPGKTLLDDEGAAellalRGLAYLGLGQLELAQKSYEQALAI----------DPRSLYAKLGLAQLALAENRFdeARAL 181

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9845275    273 CDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGRKQDA 336
Cdd:TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245
FKBP_N_2 pfam18023
BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila ...
 95-173 8.21e-04

BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila melanogaster protein BDBT (a FK506-Binding Protein) which stimulates the DBT circadian function. The domain contains the DBT-binding site. The domain is structurally homologous to the peptidyl prolyl isomerase (PPIase) regions of FK506-binding proteins despite low sequence homology. BDBT is structurally related to the immunophilin FKBP51 and it shares a common domain organization consisting of PPIase-like and TPR domains with noncanonical immunophilins such as FKBP38 or FKBPL.


Pssm-ID: 375495  Cd Length: 113  Bit Score: 38.56  E-value: 8.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275     95 WYCPDGSFVKKIIVPG-HGLDKPKLGSKCQVLALGFPFGSGMPEGWTElTIGIGQWREKMWGE-------LMEKCLESMR 166
Cdd:pfam18023   1 WESADKSISKEVLSFGfQGLEKPTEVSSCIVLVENLQNVTLRKDQGLE-KYYIYEEKEIVIGEadtpideYIEILLEMMK 79


                  ....*..
gi 9845275    167 QGEEAKI 173
Cdd:pfam18023  80 LGETAEC 86
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
212-336 1.89e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 1.89e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  212 HRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRG 291
Cdd:COG0457  12 NNLGLAYRRLGRYEEAIEDYEKALELDP--------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 9845275  292 VARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQGRKQDA 336
Cdd:COG0457  84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLAlLELGRYDEA 129
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
212-336 4.18e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 4.18e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  212 HRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRG 291
Cdd:COG0457  46 YNLGLAYLRLGRYEEALADYEQALELDP--------DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 9845275  292 VARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVI-QGRKQDA 336
Cdd:COG0457 118 LALLELGRYDEAIEAYERALELDPDDADALYNLGIALEkLGRYEEA 163
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
169-320 3.74e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.94  E-value: 3.74e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  169 EEAKIHLPGSSAPLAKLRLDSFTNGRDSWEmeAMEKEALAKEEHRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppE 248
Cdd:COG4785  36 ALAIALADLALALAAAALAAAALAAERIDR--ALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP--------D 105

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9845275  249 RTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAA 320
Cdd:COG4785 106 LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 205-339 1.83e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.01  E-value: 1.83e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  205 EALAKEEHRRGTELFRAGNPQGAARCYGRALRLLLTLPPpgpperttLYANLAACQLLLGHPQLAAQSCDRVLEREPGHL 284
Cdd:COG3914  75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE--------ALFNLGNLLLALGRLEEALAALRRALALNPDFA 146

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 9845275  285 KALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGRKQDAGLA 339
Cdd:COG3914 147 EAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIA 201
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
253-336 2.18e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.10  E-value: 2.18e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  253 YANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQG 331
Cdd:COG0457  11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAlQALG 90


                ....*
gi 9845275  332 RKQDA 336
Cdd:COG0457  91 RYEEA 95
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 218-320 3.75e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 3.75e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  218 LFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAAL 297
Cdd:COG4235  27 YLRLGRYDEALAAYEKALRLDP--------DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98

                        90       100
                ....*....|....*....|...
gi 9845275  298 GDLEKATADFKKVLAVDPKNRAA 320
Cdd:COG4235  99 GDYAEAIAAWQKLLALLPADAPA 121
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 215-320 7.16e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 7.16e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  215 GTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVAR 294
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNP--------DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL 190

                        90       100
                ....*....|....*....|....*.
gi 9845275  295 AALGDLEKATADFKKVLAVDPKNRAA 320
Cdd:COG3914 191 QDLGRLEEAIAAYRRALELDPDNADA 216
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 253-336 6.30e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.55  E-value: 6.30e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  253 YANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQG 331
Cdd:COG4235  20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAaFQQG 99


                ....*
gi 9845275  332 RKQDA 336
Cdd:COG4235 100 DYAEA 104
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 205-336 6.31e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.74  E-value: 6.31e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  205 EALAKEEHRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHL 284
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKALELDP--------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP 72

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|...
gi 9845275  285 KALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQ-GRKQDA 336
Cdd:COG4783  73 EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAlGRPDEA 125
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 253-339 2.48e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 2.48e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  253 YANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGR 332
Cdd:COG4783   7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86


                ....*..
gi 9845275  333 KQDAGLA 339
Cdd:COG4783  87 DYDEALA 93
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
212-320 1.35e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 1.35e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  212 HRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRG 291
Cdd:COG0457  80 NNLGLALQALGRYEEALEDYDKALELDP--------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                        90       100
                ....*....|....*....|....*....
gi 9845275  292 VARAALGDLEKATADFKKVLAVDPKNRAA 320
Cdd:COG0457 152 IALEKLGRYEEALELLEKLEAAALAALLA 180
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 180-315 2.77e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.66  E-value: 2.77e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  180 APLAKLRLDSFTNGRDSWEMEAMEKEALAKEEHRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAAC 259
Cdd:COG5010  26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--------NNPELYYNLALL 97

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 9845275  260 QLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDP 315
Cdd:COG5010  98 YSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
180-320 3.23e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.38  E-value: 3.23e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  180 APLAKLRLDSFTNGRDSWEMEAMEKEALAKEEHRRGTELFRAGNPQGAARCYGRALRLLLTLPPPGPPERTTLYANLAAC 259
Cdd:COG4785   3 ALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVA 82

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 9845275  260 QLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAA 320
Cdd:COG4785  83 YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 217-336 3.42e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.27  E-value: 3.42e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  217 ELFRAGNPQGAARCYGRALRLLLTLPPPGPPERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAA 296
Cdd:COG5010  21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 9845275  297 LGDLEKATADFKKVLAVDPKNRAAKEELGKVVI-QGRKQDA 336
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLsLGQDDEA 141
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 212-317 1.73e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.81  E-value: 1.73e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  212 HRRGTELFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRG 291
Cdd:COG4783  42 ALLGEILLQLGDLDEAIVLLHEALELDP--------DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLA 113

                        90       100
                ....*....|....*....|....*.
gi 9845275  292 VARAALGDLEKATADFKKVLAVDPKN 317
Cdd:COG4783 114 RAYRALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
259-336 1.94e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 1.94e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 9845275  259 CQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKAtADFKKVLAVDPKNRAAKEELGKVVI-QGRKQDA 336
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLeLGDYDEA 78
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 217-322 4.34e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.06  E-value: 4.34e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  217 ELFRAGNPQGAARCYGRALRLLLTLPPPGPPerttlYANLAACQLLLGHPQLAAQSCDRVLEREPGHLK---ALYRRGVA 293
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDA-----LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLS 76

                        90       100
                ....*....|....*....|....*....
gi 9845275  294 RAALGDLEKATADFKKVLAVDPKNRAAKE 322
Cdd:COG1729  77 YLELGDYDKARATLEELIKKYPDSEAAKE 105
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
218-319 4.72e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 4.72e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  218 LFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQlAAQSCDRVLEREPGHLKALYRRGVARAAL 297
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDP--------DNADALNNLGLLLLEQGRYD-EAIALEKALKLDPNNAEALLNLAELLLEL 72

                        90       100
                ....*....|....*....|..
gi 9845275  298 GDLEKATADFKKVLAVDPKNRA 319
Cdd:COG3063  73 GDYDEALAYLERALELDPSALR 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 218-339 5.00e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 5.00e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  218 LFRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAAL 297
Cdd:COG2956 120 YEQEGDWEKAIEVLERLLKLGP--------ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 9845275  298 GDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGRKQDAGLA 339
Cdd:COG2956 192 GDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALE 233
TPR_1 pfam00515
Tetratricopeptide repeat;
285-317 1.83e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.95  E-value: 1.83e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 9845275    285 KALYRRGVARAALGDLEKATADFKKVLAVDPKN 317
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 219-336 1.98e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 1.98e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  219 FRAGNPQGAARCYGRALRLLLtlpppgppERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALG 298
Cdd:COG2956  87 LKAGLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 9845275  299 DLEKATADFKKVLAVDPKNRAAKEELGKV-VIQGRKQDA 336
Cdd:COG2956 159 DYDEAIEALEKALKLDPDCARALLLLAELyLEQGDYEEA 197
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 212-339 2.72e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 2.72e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  212 HRRGTELFRAGNPQGAARCYGRALRLLLTLPPpgpperttLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRG 291
Cdd:COG2956 148 CELAELYLEQGDYDEAIEALEKALKLDPDCAR--------ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 9845275  292 VARAALGDLEKATADFKKVLAVDPKNrAAKEELGKVVIQGRKQDAGLA 339
Cdd:COG2956 220 ELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEAALA 266
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
257-339 8.81e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.06  E-value: 8.81e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  257 AACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGRKQDA 336
Cdd:COG4785  46 LALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDA 125


                ...
gi 9845275  337 GLA 339
Cdd:COG4785 126 ALE 128
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 248-339 1.11e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 1.11e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  248 ERTTLYANLAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV 327
Cdd:COG2956  40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI 119

                        90
                ....*....|..
gi 9845275  328 VIQGRKQDAGLA 339
Cdd:COG2956 120 YEQEGDWEKAIE 131
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 260-321 2.48e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 2.48e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9845275  260 QLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAK 321
Cdd:cd24142  10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 269-336 3.89e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 3.89e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 9845275  269 AAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQGRKQDA 336
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAlLAAGDTEEA 70
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 285-317 4.11e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.12  E-value: 4.11e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 9845275     285 KALYRRGVARAALGDLEKATADFKKVLAVDPKN 317
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
277-336 5.09e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 5.09e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 9845275  277 LEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQGRKQDA 336
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAyLRLGRYEEA 61
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 200-336 3.36e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 3.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275    200 EAMEKEALAKEEHR-----RGTELFRAGNPQGAARCYGRALRLlltlpppgppERTTLYANLAACQLLLGHPQL--AAQS 272
Cdd:TIGR02917 112 ELPGKTLLDDEGAAellalRGLAYLGLGQLELAQKSYEQALAI----------DPRSLYAKLGLAQLALAENRFdeARAL 181

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9845275    273 CDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGRKQDA 336
Cdd:TIGR02917 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 284-339 3.45e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 3.45e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 9845275  284 LKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKVVIQGRKQDAGLA 339
Cdd:COG4783   4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIV 59
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 285-316 6.05e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.73  E-value: 6.05e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 9845275    285 KALYRRGVARAALGDLEKATADFKKVLAVDPK 316
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
FKBP_N_2 pfam18023
BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila ...
 95-173 8.21e-04

BDBT FKBP like N-terminal; This is the N-terminal domain of the beta chain found in Drosophila melanogaster protein BDBT (a FK506-Binding Protein) which stimulates the DBT circadian function. The domain contains the DBT-binding site. The domain is structurally homologous to the peptidyl prolyl isomerase (PPIase) regions of FK506-binding proteins despite low sequence homology. BDBT is structurally related to the immunophilin FKBP51 and it shares a common domain organization consisting of PPIase-like and TPR domains with noncanonical immunophilins such as FKBP38 or FKBPL.


Pssm-ID: 375495  Cd Length: 113  Bit Score: 38.56  E-value: 8.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275     95 WYCPDGSFVKKIIVPG-HGLDKPKLGSKCQVLALGFPFGSGMPEGWTElTIGIGQWREKMWGE-------LMEKCLESMR 166
Cdd:pfam18023   1 WESADKSISKEVLSFGfQGLEKPTEVSSCIVLVENLQNVTLRKDQGLE-KYYIYEEKEIVIGEadtpideYIEILLEMMK 79


                  ....*..
gi 9845275    167 QGEEAKI 173
Cdd:pfam18023  80 LGETAEC 86
TPR_9 pfam13371
Tetratricopeptide repeat;
264-320 1.20e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 37.20  E-value: 1.20e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 9845275    264 GHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAA 320
Cdd:pfam13371   9 EDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 261-340 2.13e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 2.13e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275  261 LLLGHPQLAAQSCDRVLEREPGHL---KALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELGKV-VIQGRKQDA 336
Cdd:COG1729   4 LKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLgLSYLELGDY 83


                ....
gi 9845275  337 GLAR 340
Cdd:COG1729  84 DKAR 87
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 256-325 2.21e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.07  E-value: 2.21e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275    256 LAACQLLLGHPQLAAQSCDRVLEREPGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKNRAAKEELG 325
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 203-317 2.45e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 39.58  E-value: 2.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9845275    203 EKEALAKEehRRGTELFRAGNPQGAARCYGRALRLLLTLpppgpperTTLYANLAACQLLLGHPQLAAQSCDRVLEREPG 282
Cdd:TIGR00990 328 EKEAIALN--LRGTFKCLKGKHLEALADLSKSIELDPRV--------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 9845275    283 HLKALYRRGVARAALGDLEKATADFKKVLAVDPKN 317
Cdd:TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 263-317 8.81e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 34.62  E-value: 8.81e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 9845275    263 LGHPQLAAQSCDRVLERE---PGHLKALYRRGVARAALGDLEKATADFKKVLAVDPKN 317
Cdd:pfam13432  10 AGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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