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Conserved domains on  [gi|31543773|ref|NP_065237|]
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protein ZNRD2 [Mus musculus]

Protein Classification

autoantigen p27 domain-containing protein( domain architecture ID 10535273)

autoantigen p27 domain-containing protein similar to Mus musculus Sjoegren syndrome/scleroderma autoantigen 1 homolog (also called ZNRD2 or autoantigen p27 homolog) that might play a role in mitosis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Auto_anti-p27 pfam06677
Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); This family consists of ...
 37-74 1.56e-14

Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); This family consists of several Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) sequences. It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis.


:

Pssm-ID: 461984 [Multi-domain]  Cd Length: 38  Bit Score: 64.40  E-value: 1.56e-14
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 31543773    37 LMGDYLLRGYRMLGDTCADCGTILLQDKQRKIYCVACQ 74
Cdd:pfam06677   1 KMGELLLQGWTMLAEHCPVCGTPLMRDKGGEVFCVVCG 38
 
Name Accession Description Interval E-value
Auto_anti-p27 pfam06677
Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); This family consists of ...
 37-74 1.56e-14

Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); This family consists of several Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) sequences. It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis.


Pssm-ID: 461984 [Multi-domain]  Cd Length: 38  Bit Score: 64.40  E-value: 1.56e-14
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 31543773    37 LMGDYLLRGYRMLGDTCADCGTILLQDKQRKIYCVACQ 74
Cdd:pfam06677   1 KMGELLLQGWTMLAEHCPVCGTPLMRDKGGEVFCVVCG 38
PRK00420 PRK00420
hypothetical protein; Validated
 32-73 2.70e-03

hypothetical protein; Validated


Pssm-ID: 234756  Cd Length: 112  Bit Score: 36.15  E-value: 2.70e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 31543773   32 DRISRLMGDYLLRGYRMLGDTCADCGTILLQDKQRKIYCVAC 73
Cdd:PRK00420   5 EDIVKKAAELLLKGAKMLSKHCPVCGLPLFELKDGEVVCPVH 46
 
Name Accession Description Interval E-value
Auto_anti-p27 pfam06677
Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); This family consists of ...
 37-74 1.56e-14

Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); This family consists of several Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) sequences. It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis.


Pssm-ID: 461984 [Multi-domain]  Cd Length: 38  Bit Score: 64.40  E-value: 1.56e-14
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 31543773    37 LMGDYLLRGYRMLGDTCADCGTILLQDKQRKIYCVACQ 74
Cdd:pfam06677   1 KMGELLLQGWTMLAEHCPVCGTPLMRDKGGEVFCVVCG 38
PRK00420 PRK00420
hypothetical protein; Validated
 32-73 2.70e-03

hypothetical protein; Validated


Pssm-ID: 234756  Cd Length: 112  Bit Score: 36.15  E-value: 2.70e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 31543773   32 DRISRLMGDYLLRGYRMLGDTCADCGTILLQDKQRKIYCVAC 73
Cdd:PRK00420   5 EDIVKKAAELLLKGAKMLSKHCPVCGLPLFELKDGEVVCPVH 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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