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Conserved domains on  [gi|11560069|ref|NP_071592|]
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probetacellulin precursor [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA02887 super family cl31518
EGF-like protein; Provisional
 51-109 7.33e-10

EGF-like protein; Provisional


The actual alignment was detected with superfamily member PHA02887:

Pssm-ID: 165214  Cd Length: 126  Bit Score: 54.16  E-value: 7.33e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 11560069   51 ENCTGTTPRQKSKTHFSRCPKQYKHYCIHGRCRFVMDEQTPSCICEKGYFGARCEQVDL 109
Cdd:PHA02887  68 ENANAQNFKRKNSMFFEKCKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRCDEVSI 126
 
Name Accession Description Interval E-value
PHA02887 PHA02887
EGF-like protein; Provisional
 51-109 7.33e-10

EGF-like protein; Provisional


Pssm-ID: 165214  Cd Length: 126  Bit Score: 54.16  E-value: 7.33e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 11560069   51 ENCTGTTPRQKSKTHFSRCPKQYKHYCIHGRCRFVMDEQTPSCICEKGYFGARCEQVDL 109
Cdd:PHA02887  68 ENANAQNFKRKNSMFFEKCKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRCDEVSI 126
 
Name Accession Description Interval E-value
PHA02887 PHA02887
EGF-like protein; Provisional
 51-109 7.33e-10

EGF-like protein; Provisional


Pssm-ID: 165214  Cd Length: 126  Bit Score: 54.16  E-value: 7.33e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 11560069   51 ENCTGTTPRQKSKTHFSRCPKQYKHYCIHGRCRFVMDEQTPSCICEKGYFGARCEQVDL 109
Cdd:PHA02887  68 ENANAQNFKRKNSMFFEKCKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRCDEVSI 126
PHA03099 PHA03099
epidermal growth factor-like protein (EGF-like protein); Provisional
 69-142 2.43e-04

epidermal growth factor-like protein (EGF-like protein); Provisional


Pssm-ID: 165381  Cd Length: 139  Bit Score: 39.24  E-value: 2.43e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 11560069   69 CPKQYKHYCIHGRCRFVMDEQTPSCICEKGYFGARCEQVDLFYLQQDRGQILVVCLIGVMVLFIILVIGVCTCC 142
Cdd:PHA03099  45 CGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRCQHVVLVDYQRSEKPNTTTSYIPSPGIVLVLVGIIITCC 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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