NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|25742583|ref|NP_071989|]
View 

beta-defensin 4 precursor [Rattus norvegicus]

Protein Classification

Defensin_beta domain-containing protein( domain architecture ID 10464978)

Defensin_beta domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Defensin_beta pfam00711
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 27-61 2.91e-07

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


:

Pssm-ID: 459914  Cd Length: 36  Bit Score: 41.85  E-value: 2.91e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 25742583   27 NPITCLTKGGVCW-GPCTGGFRQIGTCGLPRVRCCK 61
Cdd:pfam00711  1 DPVSCRRNGGICRpGRCPGLERQIGTCGGGKLKCCR 36
 
Name Accession Description Interval E-value
Defensin_beta pfam00711
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 27-61 2.91e-07

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


Pssm-ID: 459914  Cd Length: 36  Bit Score: 41.85  E-value: 2.91e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 25742583   27 NPITCLTKGGVCW-GPCTGGFRQIGTCGLPRVRCCK 61
Cdd:pfam00711  1 DPVSCRRNGGICRpGRCPGLERQIGTCGGGKLKCCR 36
 
Name Accession Description Interval E-value
Defensin_beta pfam00711
Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of ...
 27-61 2.91e-07

Beta defensin; The beta defensins are antimicrobial peptides implicated in the resistance of epithelial surfaces to microbial colonization.


Pssm-ID: 459914  Cd Length: 36  Bit Score: 41.85  E-value: 2.91e-07
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 25742583   27 NPITCLTKGGVCW-GPCTGGFRQIGTCGLPRVRCCK 61
Cdd:pfam00711  1 DPVSCRRNGGICRpGRCPGLERQIGTCGGGKLKCCR 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH