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Conserved domains on  [gi|257196211|ref|NP_075875|]
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receptor-transporting protein 4 [Mus musculus]

Protein Classification

3CxxC-type zinc finger protein( domain architecture ID 10616235)

3CxxC-type zinc finger protein similar to zygote arrest protein 1 (ZAR1) and its homologues, ZAR1-like proteins, and receptor-transporting proteins 1-5 (RTP1-5)

Gene Ontology:  GO:0008270

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-3CxxC pfam13695
Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing ...
 50-162 2.80e-34

Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing a multiple zinc-binding region. Only one pair of cysteines is associated with a highly conserved histidine residue.


:

Pssm-ID: 463958  Cd Length: 96  Bit Score: 118.68  E-value: 2.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257196211   50 TVLGRFQCSRCCRSWTSAQVMILCHMYPDTlKSQGQARMRIFGQKCQKCfgCQFETPKFSTEIIKRILNNLVNYILQRYY 129
Cdd:pfam13695   1 KVYGRFRCSSCSRKWTSAKVWITIRMYLDP-PGNGTYNARVYGQRCKKC--KRLERPELDEEEVERVLYRLKKKIEKPCY 77

                          90       100       110
                  ....*....|....*....|....*....|...
gi 257196211  130 GHRkialtsnaslgekvtLDGPHDTRNCEACSL 162
Cdd:pfam13695  78 GEK---------------TTGPHERDLCEGCKL 95
 
Name Accession Description Interval E-value
zf-3CxxC pfam13695
Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing ...
 50-162 2.80e-34

Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing a multiple zinc-binding region. Only one pair of cysteines is associated with a highly conserved histidine residue.


Pssm-ID: 463958  Cd Length: 96  Bit Score: 118.68  E-value: 2.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257196211   50 TVLGRFQCSRCCRSWTSAQVMILCHMYPDTlKSQGQARMRIFGQKCQKCfgCQFETPKFSTEIIKRILNNLVNYILQRYY 129
Cdd:pfam13695   1 KVYGRFRCSSCSRKWTSAKVWITIRMYLDP-PGNGTYNARVYGQRCKKC--KRLERPELDEEEVERVLYRLKKKIEKPCY 77

                          90       100       110
                  ....*....|....*....|....*....|...
gi 257196211  130 GHRkialtsnaslgekvtLDGPHDTRNCEACSL 162
Cdd:pfam13695  78 GEK---------------TTGPHERDLCEGCKL 95
 
Name Accession Description Interval E-value
zf-3CxxC pfam13695
Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing ...
 50-162 2.80e-34

Zinc-binding domain; This is a family with several pairs of CxxC motifs possibly representing a multiple zinc-binding region. Only one pair of cysteines is associated with a highly conserved histidine residue.


Pssm-ID: 463958  Cd Length: 96  Bit Score: 118.68  E-value: 2.80e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257196211   50 TVLGRFQCSRCCRSWTSAQVMILCHMYPDTlKSQGQARMRIFGQKCQKCfgCQFETPKFSTEIIKRILNNLVNYILQRYY 129
Cdd:pfam13695   1 KVYGRFRCSSCSRKWTSAKVWITIRMYLDP-PGNGTYNARVYGQRCKKC--KRLERPELDEEEVERVLYRLKKKIEKPCY 77

                          90       100       110
                  ....*....|....*....|....*....|...
gi 257196211  130 GHRkialtsnaslgekvtLDGPHDTRNCEACSL 162
Cdd:pfam13695  78 GEK---------------TTGPHERDLCEGCKL 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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