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Conserved domains on  [gi|115495551|ref|NP_077040|]
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outer dense fiber protein 1 [Rattus norvegicus]

Protein Classification

Hsp20/alpha crystallin family protein; p23/wos2 family protein( domain architecture ID 10158149)

Hsp20/alpha crystallin family protein is a small, stress-induced protein, between 12-43 kDa, which functions as an ATP-independent chaperone that prevents aggregation and protects against cell stress, induced by heat, osmotic, or acid shock| p23/wos2 family protein similar to Arabidopsis thaliana co-chaperone protein p23, Saccharomyces cerevisiae Sba1 and Schizosaccharomyces pombe protein wos2

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ACD_HspB10 cd06482
Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also ...
102-188 3.48e-49

Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.


:

Pssm-ID: 107237  Cd Length: 87  Bit Score: 156.58  E-value: 3.48e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115495551 102 LASSCCSSNILGSVNVCGFEPDQVKVRVKDGKVCVSAERENRYDCLGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSC 181
Cdd:cd06482    1 LAASCDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80

                 ....*..
gi 115495551 182 VKIESPC 188
Cdd:cd06482   81 VKIETPC 87
 
Name Accession Description Interval E-value
ACD_HspB10 cd06482
Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also ...
102-188 3.48e-49

Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.


Pssm-ID: 107237  Cd Length: 87  Bit Score: 156.58  E-value: 3.48e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115495551 102 LASSCCSSNILGSVNVCGFEPDQVKVRVKDGKVCVSAERENRYDCLGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSC 181
Cdd:cd06482    1 LAASCDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80

                 ....*..
gi 115495551 182 VKIESPC 188
Cdd:cd06482   81 VKIETPC 87
IbpA COG0071
Small heat shock protein IbpA, HSP20 family [Posttranslational modification, protein turnover, ...
119-176 1.81e-04

Small heat shock protein IbpA, HSP20 family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 439841  Cd Length: 105  Bit Score: 39.75  E-value: 1.81e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 115495551 119 GFEPDQVKVRVKDGKVCVSAERENRYDcLGSKKY-----SYMNICKEFSLPPCVDEKDVTYSY 176
Cdd:COG0071   19 GVDKEDIDVTVEGNVLTISGERKEEEE-EEGENYlrrerRYGSFERSFTLPDDVDVDKIEASY 80
HSP20 pfam00011
Hsp20/alpha crystallin family; Not only do small heat-shock-proteins occur in eukaryotes and ...
115-176 5.47e-03

Hsp20/alpha crystallin family; Not only do small heat-shock-proteins occur in eukaryotes and prokaryotes but they have also now been shown to occur in cyanobacterial phages as well as their bacterial hosts.


Pssm-ID: 459629  Cd Length: 100  Bit Score: 35.28  E-value: 5.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 115495551  115 VNVCGFEPDQVKVRVKDGKVCVSAERENRY--DCLGSKKYSYMNICKEFSLPPCVDEKDVTYSY 176
Cdd:pfam00011  13 LDVPGFKPEELKVKVEDNRLLVKGEHEEEKedDHGLRSERSYGSFSRKFTLPENADPDKVKASL 76
 
Name Accession Description Interval E-value
ACD_HspB10 cd06482
Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also ...
102-188 3.48e-49

Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.


Pssm-ID: 107237  Cd Length: 87  Bit Score: 156.58  E-value: 3.48e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 115495551 102 LASSCCSSNILGSVNVCGFEPDQVKVRVKDGKVCVSAERENRYDCLGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSC 181
Cdd:cd06482    1 LAASCDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80

                 ....*..
gi 115495551 182 VKIESPC 188
Cdd:cd06482   81 VKIETPC 87
metazoan_ACD cd06526
Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins ...
114-188 3.72e-21

Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.


Pssm-ID: 107247  Cd Length: 83  Bit Score: 84.11  E-value: 3.72e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 115495551 114 SVNVCGFEPDQVKVRVKDGKVCVSAERENRYDclgSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSCVKIESPC 188
Cdd:cd06526   12 TLDVKGFKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
ACD_sHsps-like cd06464
Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). ...
115-179 3.16e-12

Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.


Pssm-ID: 107221  Cd Length: 88  Bit Score: 60.65  E-value: 3.16e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 115495551 115 VNVCGFEPDQVKVRVKDGKVCVSAERENRYD---CLGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLG 179
Cdd:cd06464   13 ADLPGFKKEDIKVEVEDGVLTISGEREEEEEeeeNYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80
ACD_sHsps_p23-like cd00298
This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small ...
114-179 8.66e-10

This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR).


Pssm-ID: 107219  Cd Length: 80  Bit Score: 53.75  E-value: 8.66e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 115495551 114 SVNVCGFEPDQVKVRVKDGKVCVSAERENRYDclgsKKYSYMNICKEFSLPPCVDEKDVTYSYGLG 179
Cdd:cd00298   11 TVDLPGVKKEDIKVEVEDNVLTISGKREEEEE----RERSYGEFERSFELPEDVDPEKSKASLENG 72
ACD_HspB9_like cd06481
Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and ...
114-188 7.15e-06

Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.


Pssm-ID: 107236  Cd Length: 87  Bit Score: 43.16  E-value: 7.15e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 115495551 114 SVNVCGFEPDQVKVRVKDGKVCVSAERE-NRYDCLGSKKYSYMNICKEFSLPPCVDEKDVTYSYGLGSCVKIESPC 188
Cdd:cd06481   12 KLDVRGFSPEDLSVRVDGRKLVVTGKREkKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAPR 87
ACD_HspB1_like cd06475
Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also ...
114-187 1.26e-04

Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiation, cell growth, development, and apoptosis. Its activity can be regulated by phosphorylation. Its unphosphorylated state is a high molecular weight aggregated form (100-800kDa) composed of up to 24 subunits, which forms as a result of multiple interactions within the ACD, and is required for chaperone function and resistance to oxidative stress. Upon phosphorylation these large aggregates rapidly disassociate to smaller oligomers and chaperone activity is modified. High constitutive levels of Hsp27 have been detected in various cancer cells, in particular those of carcinoma origin. Over-expression of Hsp27 has a protective effect against various diseases-processes, including Huntington's disease. Mutations in Hsp27 have been associated with a form of distal hereditary motor neuropathy type II and Charcot-Marie-Tooth disease type 2.


Pssm-ID: 107230  Cd Length: 86  Bit Score: 39.83  E-value: 1.26e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 115495551 114 SVNVCGFEPDQVKVRVKDGKVCVSAERENRYDclgskKYSYMNIC--KEFSLPPCVDEKDVTYSYGLGSCVKIESP 187
Cdd:cd06475   15 SLDVNHFAPEELVVKTKDGVVEITGKHEEKQD-----EHGFVSRCftRKYTLPPGVDPTAVTSSLSPDGILTVEAP 85
IbpA COG0071
Small heat shock protein IbpA, HSP20 family [Posttranslational modification, protein turnover, ...
119-176 1.81e-04

Small heat shock protein IbpA, HSP20 family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 439841  Cd Length: 105  Bit Score: 39.75  E-value: 1.81e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 115495551 119 GFEPDQVKVRVKDGKVCVSAERENRYDcLGSKKY-----SYMNICKEFSLPPCVDEKDVTYSY 176
Cdd:COG0071   19 GVDKEDIDVTVEGNVLTISGERKEEEE-EEGENYlrrerRYGSFERSFTLPDDVDVDKIEASY 80
ACD_HspB8_like cd06480
Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) ...
115-187 2.75e-04

Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.


Pssm-ID: 107235  Cd Length: 91  Bit Score: 38.78  E-value: 2.75e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 115495551 115 VNVCGFEPDQVKVRVKDGKVCVSAERENRYDCLG--SKkysymNICKEFSLPPCVDEKDVTYSYGLGSCVKIESP 187
Cdd:cd06480   21 VNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGivSK-----NFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90
HSP20 pfam00011
Hsp20/alpha crystallin family; Not only do small heat-shock-proteins occur in eukaryotes and ...
115-176 5.47e-03

Hsp20/alpha crystallin family; Not only do small heat-shock-proteins occur in eukaryotes and prokaryotes but they have also now been shown to occur in cyanobacterial phages as well as their bacterial hosts.


Pssm-ID: 459629  Cd Length: 100  Bit Score: 35.28  E-value: 5.47e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 115495551  115 VNVCGFEPDQVKVRVKDGKVCVSAERENRY--DCLGSKKYSYMNICKEFSLPPCVDEKDVTYSY 176
Cdd:pfam00011  13 LDVPGFKPEELKVKVEDNRLLVKGEHEEEKedDHGLRSERSYGSFSRKFTLPENADPDKVKASL 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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