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Conserved domains on  [gi|21735441|ref|NP_080718|]
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COX assembly mitochondrial protein homolog [Mus musculus]

Protein Classification

COX assembly mitochondrial protein( domain architecture ID 10554202)

COX assembly mitochondrial protein is required for mitochondrial cytochrome c oxidase (COX) assembly and respiration

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cmc1 pfam08583
Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein ...
 19-87 4.84e-15

Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein which is known to localize to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.


:

Pssm-ID: 400756  Cd Length: 70  Bit Score: 63.90  E-value: 4.84e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21735441    19 IPKIIREKARERCSEQVEDFTRCCKD-SGILMVLKCRKENSALKDCLTAYYNDPAFYEECKLEYLKEREE 87
Cdd:pfam08583   1 MHPQLRKKAFKKCAELIKALAECHKGgRTLKAFGKCNKEKRAMNKCLREYRTDEALRDRERDREIKERLE 70
 
Name Accession Description Interval E-value
Cmc1 pfam08583
Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein ...
 19-87 4.84e-15

Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein which is known to localize to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.


Pssm-ID: 400756  Cd Length: 70  Bit Score: 63.90  E-value: 4.84e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21735441    19 IPKIIREKARERCSEQVEDFTRCCKD-SGILMVLKCRKENSALKDCLTAYYNDPAFYEECKLEYLKEREE 87
Cdd:pfam08583   1 MHPQLRKKAFKKCAELIKALAECHKGgRTLKAFGKCNKEKRAMNKCLREYRTDEALRDRERDREIKERLE 70
PRK12355 PRK12355
type-F conjugative transfer system mating-pair stabilization protein TraN;
28-60 4.74e-03

type-F conjugative transfer system mating-pair stabilization protein TraN;


Pssm-ID: 237072 [Multi-domain]  Cd Length: 558  Bit Score: 34.78  E-value: 4.74e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 21735441   28 RERCSEQVEDFTRCCKDSG---ILMVLKCRKENSAL 60
Cdd:PRK12355 416 AESCRKKAAGFSNCCKDSGwgqDIGLAKCSSEEKAL 451
 
Name Accession Description Interval E-value
Cmc1 pfam08583
Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein ...
 19-87 4.84e-15

Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein which is known to localize to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.


Pssm-ID: 400756  Cd Length: 70  Bit Score: 63.90  E-value: 4.84e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21735441    19 IPKIIREKARERCSEQVEDFTRCCKD-SGILMVLKCRKENSALKDCLTAYYNDPAFYEECKLEYLKEREE 87
Cdd:pfam08583   1 MHPQLRKKAFKKCAELIKALAECHKGgRTLKAFGKCNKEKRAMNKCLREYRTDEALRDRERDREIKERLE 70
PRK12355 PRK12355
type-F conjugative transfer system mating-pair stabilization protein TraN;
28-60 4.74e-03

type-F conjugative transfer system mating-pair stabilization protein TraN;


Pssm-ID: 237072 [Multi-domain]  Cd Length: 558  Bit Score: 34.78  E-value: 4.74e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 21735441   28 RERCSEQVEDFTRCCKDSG---ILMVLKCRKENSAL 60
Cdd:PRK12355 416 AESCRKKAAGFSNCCKDSGwgqDIGLAKCSSEEKAL 451
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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