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Conserved domains on  [gi|258679414|ref|NP_082794|]
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collagen alpha-1(XX) chain precursor [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 176-339 8.24e-87

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


:

Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 278.79  E-value: 8.24e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTF 255
Cdd:cd01482     1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVHN 335
Cdd:cd01482    81 TGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIASKPSETHVFN 160


                  ....
gi 258679414  336 VLDF 339
Cdd:cd01482   161 VADF 164
LamG super family cl22861
Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have ...
 840-1034 1.08e-31

Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.


The actual alignment was detected with superfamily member smart00210:

Pssm-ID: 473984  Cd Length: 184  Bit Score: 122.47  E-value: 1.08e-31
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    840 GFDLMVAFGLVAKEYASIRGVAMEPSalgvVPTFTLFKDAQLMRRVSDIYPATLPPEHTIVFLVRLlpeTPREAFALWQM 919
Cdd:smart00210    1 GQDLLQVFDLPSLSFAIRQVVGPEPG----SPAYRLGDPALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAI 73

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    920 MAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEVTFDlqdAKKIFFGSFHKVHIAVGHSKVRLYVDCRKVAERPIGDAGS 999
Cdd:smart00210   74 YDAQNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFR---NLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQ 150

                           170       180       190
                    ....*....|....*....|....*....|....*..
gi 258679414   1000 PP--TGGFITLGRLAKARGPrsssATFQLQMLQIVCS 1034
Cdd:smart00210  151 PPidTDGIEVRGAQAADRKP----FQGDLQQLKIVCD 183
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1085-1221 9.47e-15

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 78.41  E-value: 9.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1085 GPPGQQGHPGPKGEPGPPGQTGPEGPGGQQGSPGTQG----RAVQGPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGL 1160
Cdd:NF038329  126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGpagpQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 258679414 1161 QGPKGMRGL--EGPAGLPGPPGPRGFQGLAGARGTNGERGAPGAVGPTGLPGSKGERGEKGEP 1221
Cdd:NF038329  206 QGPAGPAGPdgEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268
fn3 pfam00041
Fibronectin type III domain;
750-818 1.35e-11

Fibronectin type III domain;


:

Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 61.66  E-value: 1.35e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 258679414   750 TPNSLQVNWTPP---SGHVLHYRLNYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGESM 818
Cdd:pfam00041   12 TSTSLTVSWTPPpdgNGPITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGP 83
fn3 pfam00041
Fibronectin type III domain;
376-454 1.20e-10

Fibronectin type III domain;


:

Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 58.97  E-value: 1.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   376 PTPTRLILTHATSSSIHLSWTPALY---PPLKYLIVWQPSRGG-APKEVVVEGPVSSMELGNLTSSTEYLVSVLPVYESG 451
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPPPDgngPITGYEVEYRPKNSGePWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80


                   ...
gi 258679414   452 VGK 454
Cdd:pfam00041   81 EGP 83
FN3 super family cl27307
Fibronectin type 3 domain [General function prediction only];
601-837 1.65e-10

Fibronectin type 3 domain [General function prediction only];


The actual alignment was detected with superfamily member COG3401:

Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 65.41  E-value: 1.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  601 VPGNLTSATLGPLSSSTMYTVRVTCFYLGGGSS---VLTGHVTTQKAPSPGQLSVMELPGDAVKLSWLATALSGVLVYQI 677
Cdd:COG3401   187 VTSTTLVDGGGDIEPGTTYYYRVAATDTGGESApsnEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTESDATGYRV 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  678 KWMPLGEGKAREI-SVPGTlgTATLPGLMKHVEYEITILAYYRDGTRSD----------------PVSLRYTPSaasrsp 740
Cdd:COG3401   267 YRSNSGDGPFTKVaTVTTT--SYTDTGLTNGTTYYYRVTAVDAAGNESApsnvvsvttdltppaaPSGLTATAV------ 338

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  741 psslalsseTPNSLQVNWTPPSG-HVLHYRLnYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGESMA 819
Cdd:COG3401   339 ---------GSSSITLSWTASSDaDVTGYNV-YRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNESA 408

                         250       260
                  ....*....|....*....|.
gi 258679414  820 VSATYR---TAACPALHPDSS 837
Cdd:COG3401   409 PSEEVSattASAASGESLTAS 429
fn3 pfam00041
Fibronectin type III domain;
556-624 3.33e-08

Fibronectin type III domain;


:

Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 52.03  E-value: 3.33e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 258679414   556 GPPRHLTFSDVRYNSTCVSWEA----QRPVRLVKVSYISSDGSHSGQTQ-VPGNLTSATLGPLSSSTMYTVRVT 624
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPppdgNGPITGYEVEYRPKNSGEPWNEItVPGTTTSVTLTGLKPGTEYEVRVQ 74
fn3 pfam00041
Fibronectin type III domain;
475-539 1.75e-07

Fibronectin type III domain;


:

Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 50.11  E-value: 1.75e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 258679414   475 AVTPRTLHVTW-PPSAG---VTQYLVQYLLATSTGEEQKREVHVGQPEVLLDGLEPGQDYDVSVQSLRG 539
Cdd:pfam00041   10 DVTSTSLTVSWtPPPDGngpITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNG 78
 
Name Accession Description Interval E-value
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 176-339 8.24e-87

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 278.79  E-value: 8.24e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTF 255
Cdd:cd01482     1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVHN 335
Cdd:cd01482    81 TGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIASKPSETHVFN 160


                  ....
gi 258679414  336 VLDF 339
Cdd:cd01482   161 VADF 164
VWA pfam00092
von Willebrand factor type A domain;
177-345 4.28e-62

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 209.44  E-value: 4.28e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   177 DIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNT-F 255
Cdd:pfam00092    1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTtN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQD-DVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVH 334
Cdd:pfam00092   81 TGKALKYALENLFSSAAGARPGAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEGHVF 160

                          170
                   ....*....|.
gi 258679414   335 NVLDFPQLDTL 345
Cdd:pfam00092  161 TVSDFEALEDL 171
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 177-342 9.13e-49

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 171.10  E-value: 9.13e-49
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    177 DIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYK-GGNTF 255
Cdd:smart00327    1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYKlGGGTN 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQD---DVRTAARILKDQDIDVFVVGVKN-VDEAELKLLASQPLDI 331
Cdd:smart00327   81 LGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNdVDEEELKKLASAPGGV 160

                           170
                    ....*....|.
gi 258679414    332 TVHNVLDFPQL 342
Cdd:smart00327  161 YVFLPELLDLL 171
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 840-1034 1.08e-31

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 122.47  E-value: 1.08e-31
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    840 GFDLMVAFGLVAKEYASIRGVAMEPSalgvVPTFTLFKDAQLMRRVSDIYPATLPPEHTIVFLVRLlpeTPREAFALWQM 919
Cdd:smart00210    1 GQDLLQVFDLPSLSFAIRQVVGPEPG----SPAYRLGDPALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAI 73

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    920 MAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEVTFDlqdAKKIFFGSFHKVHIAVGHSKVRLYVDCRKVAERPIGDAGS 999
Cdd:smart00210   74 YDAQNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFR---NLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQ 150

                           170       180       190
                    ....*....|....*....|....*....|....*..
gi 258679414   1000 PP--TGGFITLGRLAKARGPrsssATFQLQMLQIVCS 1034
Cdd:smart00210  151 PPidTDGIEVRGAQAADRKP----FQGDLQQLKIVCD 183
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 122-327 1.03e-19

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 90.38  E-value: 1.03e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  122 RGSRRLAGATLEPTSLPLRGPDSEKTSEPSIAFTLSRDLPILDHPQFQCTPPTPADIIFLVDGSWS-IGHNHFQQVKDFL 200
Cdd:COG1240    39 LLALPLAGLALLLGLAGLGLLALLLAALLLLLAVLLLLLALALAPLALARPQRGRDVVLVVDASGSmAAENRLEAAKGAL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  201 ASIITQFaigPDKVQVGLTQYSGDPQTEWDLNSfqTKEQVLAAVHHLRYKGGnTFTGLALTHVLEQnlkpAAGVRPEAAK 280
Cdd:COG1240   119 LDFLDDY---RPRDRVGLVAFGGEAEVLLPLTR--DREALKRALDELPPGGG-TPLGDALALALEL----LKRADPARRK 188

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 258679414  281 VLILVTDGK---SQDDVRTAARILKDQDIDVFVVGV--KNVDEAELKLLASQ 327
Cdd:COG1240   189 VIVLLTDGRdnaGRIDPLEAAELAAAAGIRIYTIGVgtEAVDEGLLREIAEA 240
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1085-1221 9.47e-15

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 78.41  E-value: 9.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1085 GPPGQQGHPGPKGEPGPPGQTGPEGPGGQQGSPGTQG----RAVQGPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGL 1160
Cdd:NF038329  126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGpagpQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 258679414 1161 QGPKGMRGL--EGPAGLPGPPGPRGFQGLAGARGTNGERGAPGAVGPTGLPGSKGERGEKGEP 1221
Cdd:NF038329  206 QGPAGPAGPdgEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1122-1221 8.04e-14

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 75.33  E-value: 8.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1122 RAVQGPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRGLEGPaglpgppgprgfQGLAGARGTNGERGAPG 1201
Cdd:NF038329  119 KGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE------------AGPQGPAGKDGEAGAKG 186

                          90       100
                  ....*....|....*....|
gi 258679414 1202 AVGPTGLPGSKGERGEKGEP 1221
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQ 206
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1047-1221 5.11e-12

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 69.55  E-value: 5.11e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1047 PALRDGETCPAFPSAcaysseTPGPPGPQGPPGLPGRNGPPGQQGHPGPKGEPGPPGQTGPEGPGGQQGSPGTQGRAVQG 1126
Cdd:NF038329  163 PAGPQGEAGPQGPAG------KDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQG 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1127 PMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRGLEGPAglpgppgprgfqGLAGARGTNGERGAPGAVGP- 1205
Cdd:NF038329  237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV------------GPAGKDGQNGKDGLPGKDGKd 304

                         170
                  ....*....|....*...
gi 258679414 1206 --TGLPGSKGERGEKGEP 1221
Cdd:NF038329  305 gqNGKDGLPGKDGKDGQP 322
fn3 pfam00041
Fibronectin type III domain;
750-818 1.35e-11

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 61.66  E-value: 1.35e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 258679414   750 TPNSLQVNWTPP---SGHVLHYRLNYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGESM 818
Cdd:pfam00041   12 TSTSLTVSWTPPpdgNGPITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGP 83
fn3 pfam00041
Fibronectin type III domain;
376-454 1.20e-10

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 58.97  E-value: 1.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   376 PTPTRLILTHATSSSIHLSWTPALY---PPLKYLIVWQPSRGG-APKEVVVEGPVSSMELGNLTSSTEYLVSVLPVYESG 451
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPPPDgngPITGYEVEYRPKNSGePWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80


                   ...
gi 258679414   452 VGK 454
Cdd:pfam00041   81 EGP 83
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
601-837 1.65e-10

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 65.41  E-value: 1.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  601 VPGNLTSATLGPLSSSTMYTVRVTCFYLGGGSS---VLTGHVTTQKAPSPGQLSVMELPGDAVKLSWLATALSGVLVYQI 677
Cdd:COG3401   187 VTSTTLVDGGGDIEPGTTYYYRVAATDTGGESApsnEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTESDATGYRV 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  678 KWMPLGEGKAREI-SVPGTlgTATLPGLMKHVEYEITILAYYRDGTRSD----------------PVSLRYTPSaasrsp 740
Cdd:COG3401   267 YRSNSGDGPFTKVaTVTTT--SYTDTGLTNGTTYYYRVTAVDAAGNESApsnvvsvttdltppaaPSGLTATAV------ 338

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  741 psslalsseTPNSLQVNWTPPSG-HVLHYRLnYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGESMA 819
Cdd:COG3401   339 ---------GSSSITLSWTASSDaDVTGYNV-YRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNESA 408

                         250       260
                  ....*....|....*....|.
gi 258679414  820 VSATYR---TAACPALHPDSS 837
Cdd:COG3401   409 PSEEVSattASAASGESLTAS 429
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 750-817 6.41e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 57.12  E-value: 6.41e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 258679414  750 TPNSLQVNWTPPS---GHVLHYRLNYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGES 817
Cdd:cd00063    13 TSTSVTLSWTPPEddgGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGES 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 378-457 8.34e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 56.74  E-value: 8.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  378 PTRLILTHATSSSIHLSWTPALY---PPLKYLIVWQPSRGGAPKEV-VVEGPVSSMELGNLTSSTEYLVSVLPVYESGVG 453
Cdd:cd00063     4 PTNLRVTDVTSTSVTLSWTPPEDdggPITGYVVEYREKGSGDWKEVeVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGES 83


                  ....
gi 258679414  454 KSLQ 457
Cdd:cd00063    84 PPSE 87
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 750-817 3.18e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 54.93  E-value: 3.18e-09
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 258679414    750 TPNSLQVNWTPPS-----GHVLHYRLNYTlaSGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGES 817
Cdd:smart00060   13 TSTSVTLSWEPPPddgitGYIVGYRVEYR--EEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
645-721 9.45e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 53.57  E-value: 9.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   645 PSPGQLSVMELPGDAVKLSWLA-TALSGVLV-YQIKWMPLGEGKA-REISVPGTLGTATLPGLMKHVEYEITILAYYRDG 721
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPpPDGNGPITgYEVEYRPKNSGEPwNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 376-453 1.03e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.39  E-value: 1.03e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    376 PTPTRLILTHATSSSIHLSWTPALYP-PLKYLIVWQPSRGGAP---KEVVVEGPVSSMELGNLTSSTEYLVSVLPVYESG 451
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEPPPDDgITGYIVGYRVEYREEGsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81


                    ..
gi 258679414    452 VG 453
Cdd:smart00060   82 EG 83
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 1153-1221 2.52e-08

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 51.34  E-value: 2.52e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 258679414  1153 GIPGKTGLQGPKGMRGlegpagLPgppgprgfqGLAGARGTNGERGAPGAVGPTGLPGSKGERGEKGEP 1221
Cdd:pfam01391    1 GPPGPPGPPGPPGPPG------PP---------GPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAP 54
fn3 pfam00041
Fibronectin type III domain;
556-624 3.33e-08

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 52.03  E-value: 3.33e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 258679414   556 GPPRHLTFSDVRYNSTCVSWEA----QRPVRLVKVSYISSDGSHSGQTQ-VPGNLTSATLGPLSSSTMYTVRVT 624
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPppdgNGPITGYEVEYRPKNSGEPWNEItVPGTTTSVTLTGLKPGTEYEVRVQ 74
fn3 pfam00041
Fibronectin type III domain;
475-539 1.75e-07

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 50.11  E-value: 1.75e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 258679414   475 AVTPRTLHVTW-PPSAG---VTQYLVQYLLATSTGEEQKREVHVGQPEVLLDGLEPGQDYDVSVQSLRG 539
Cdd:pfam00041   10 DVTSTSLTVSWtPPPDGngpITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNG 78
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 475-535 2.41e-07

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 49.54  E-value: 2.41e-07
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 258679414    475 AVTPRTLHVTW--PPSAGVTQYLVQYLLATSTGEEQKREVHV--GQPEVLLDGLEPGQDYDVSVQ 535
Cdd:smart00060   11 DVTSTSVTLSWepPPDDGITGYIVGYRVEYREEGSEWKEVNVtpSSTSYTLTGLKPGTEYEFRVR 75
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 475-552 5.74e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 49.03  E-value: 5.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  475 AVTPRTLHVTWPPSAG----VTQYLVQYLLATSTGEEQKREVHVGQPEVLLDGLEPGQDYDVSVQSLRGPEASE-VQSIR 549
Cdd:cd00063    11 DVTSTSVTLSWTPPEDdggpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPpSESVT 90


                  ...
gi 258679414  550 ART 552
Cdd:cd00063    91 VTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 647-728 8.49e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 48.26  E-value: 8.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  647 PGQLSVMELPGDAVKLSWLATALSG--VLVYQIKWMPLGEGKAREISV-PGTLGTATLPGLMKHVEYEITILAYYRDGtR 723
Cdd:cd00063     4 PTNLRVTDVTSTSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVtPGSETSYTLTGLKPGTEYEFRVRAVNGGG-E 82


                  ....*
gi 258679414  724 SDPVS 728
Cdd:cd00063    83 SPPSE 87
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 177-325 9.86e-07

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 53.04  E-value: 9.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  177 DIIFLVDGSWSIG-HNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQT--KEQVLAAVHHLRyKG-- 251
Cdd:PTZ00441   44 DLYLLVDGSGSIGyHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASkdKEQALIIVKSLR-KTyl 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 258679414  252 --GNTFTGLALTHVlEQNLKPAAGvRPEAAKVLILVTDG--KSQDDVRTAARILKDQDIDVFVVGV-KNVDEAELKLLA 325
Cdd:PTZ00441  123 pyGKTNMTDALLEV-RKHLNDRVN-RENAIQLVILMTDGipNSKYRALEESRKLKDRNVKLAVIGIgQGINHQFNRLLA 199
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 556-632 9.71e-06

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 44.91  E-value: 9.71e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    556 GPPRHLTFSDVRYNSTCVSWE--AQRPVRLVKVSYISSDGSHSGQTQ---VPGNLTSATLGPLSSSTMYTVRVTCFYLGG 630
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEppPDDGITGYIVGYRVEYREEGSEWKevnVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81


                    ..
gi 258679414    631 GS 632
Cdd:smart00060   82 EG 83
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 645-721 1.46e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 44.53  E-value: 1.46e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    645 PSPGQLSVMELPGDAVKLSWLATALSGVLVYQIKWMPLGEGKA---REISVPGTLGTATLPGLMKHVEYEITILAYYRDG 721
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 556-641 1.53e-05

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 44.79  E-value: 1.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  556 GPPRHLTFSDVRYNSTCVSWEA----QRPVRLVKVSYISSDGSHSGQ-TQVPGNLTSATLGPLSSSTMYTVRVTCFYLGG 630
Cdd:cd00063     2 SPPTNLRVTDVTSTSVTLSWTPpeddGGPITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81

                          90
                  ....*....|..
gi 258679414  631 -GSSVLTGHVTT 641
Cdd:cd00063    82 eSPPSESVTVTT 93
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1126-1168 1.47e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 42.58  E-value: 1.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 258679414 1126 GPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRG 1168
Cdd:NF038329  293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
 
Name Accession Description Interval E-value
vWA_collagen_alphaI-XII-like cd01482
Collagen: The extracellular matrix represents a complex alloy of variable members of diverse ...
 176-339 8.24e-87

Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238759 [Multi-domain]  Cd Length: 164  Bit Score: 278.79  E-value: 8.24e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTF 255
Cdd:cd01482     1 ADIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVHN 335
Cdd:cd01482    81 TGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIASKPSETHVFN 160


                  ....
gi 258679414  336 VLDF 339
Cdd:cd01482   161 VADF 164
vWA_collagen cd01472
von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This ...
 176-339 7.00e-73

von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.


Pssm-ID: 238749 [Multi-domain]  Cd Length: 164  Bit Score: 239.82  E-value: 7.00e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTF 255
Cdd:cd01472     1 ADIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVHN 335
Cdd:cd01472    81 TGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNADEEELKQIASDPKELYVFN 160


                  ....
gi 258679414  336 VLDF 339
Cdd:cd01472   161 VADF 164
VWA pfam00092
von Willebrand factor type A domain;
177-345 4.28e-62

von Willebrand factor type A domain;


Pssm-ID: 459670 [Multi-domain]  Cd Length: 174  Bit Score: 209.44  E-value: 4.28e-62
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   177 DIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNT-F 255
Cdd:pfam00092    1 DIVFLLDGSGSIGGDNFEKVKEFLKKLVESLDIGPDGTRVGLVQYSSDVRTEFPLNDYSSKEELLSAVDNLRYLGGGTtN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQD-DVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVH 334
Cdd:pfam00092   81 TGKALKYALENLFSSAAGARPGAPKVVVLLTDGRSQDgDPEEVARELKSAGVTVFAVGVGNADDEELRKIASEPGEGHVF 160

                          170
                   ....*....|.
gi 258679414   335 NVLDFPQLDTL 345
Cdd:pfam00092  161 TVSDFEALEDL 171
vWFA_subfamily_ECM cd01450
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 176-330 2.34e-56

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains


Pssm-ID: 238727 [Multi-domain]  Cd Length: 161  Bit Score: 192.51  E-value: 2.34e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGN-T 254
Cdd:cd01450     1 LDIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLGGGgT 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 258679414  255 FTGLALTHVLEQNLKPAAgVRPEAAKVLILVTDGKSQD--DVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLD 330
Cdd:cd01450    81 NTGKALQYALEQLFSESN-ARENVPKVIIVLTDGRSDDggDPKEAAAKLKDEGIKVFVVGVGPADEEELREIASCPSE 157
VWA smart00327
von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins ...
 177-342 9.13e-49

von Willebrand factor (vWF) type A domain; VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.


Pssm-ID: 214621 [Multi-domain]  Cd Length: 175  Bit Score: 171.10  E-value: 9.13e-49
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    177 DIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYK-GGNTF 255
Cdd:smart00327    1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRSKDALLEALASLSYKlGGGTN 80

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    256 TGLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQD---DVRTAARILKDQDIDVFVVGVKN-VDEAELKLLASQPLDI 331
Cdd:smart00327   81 LGAALQYALENLFSKSAGSRRGAPKVVILITDGESNDgpkDLLKAAKELKRSGVKVFVVGVGNdVDEEELKKLASAPGGV 160

                           170
                    ....*....|.
gi 258679414    332 TVHNVLDFPQL 342
Cdd:smart00327  161 YVFLPELLDLL 171
vWA_Matrilin cd01475
VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and ...
 175-355 4.86e-45

VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.


Pssm-ID: 238752 [Multi-domain]  Cd Length: 224  Bit Score: 162.55  E-value: 4.86e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  175 PADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNT 254
Cdd:cd01475     2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLETGT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  255 FTGLALTHVLEQNLKPAAGVRPEAA---KVLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDI 331
Cdd:cd01475    82 MTGLAIQYAMNNAFSEAEGARPGSErvpRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIASEPLAD 161

                         170       180
                  ....*....|....*....|....
gi 258679414  332 TVHNVLDFPQLDTLAPLLSRLICQ 355
Cdd:cd01475   162 HVFYVEDFSTIEELTKKFQGKICV 185
vWA_integrins_alpha_subunit cd01469
Integrins are a class of adhesion receptors that link the extracellular matrix to the ...
 177-345 8.41e-43

Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.


Pssm-ID: 238746 [Multi-domain]  Cd Length: 177  Bit Score: 154.44  E-value: 8.41e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  177 DIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTFT 256
Cdd:cd01469     2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLGLTNT 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  257 GLALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQDDVRTAARI--LKDQDIDVFVVGV------KNVDEaELKLLASQP 328
Cdd:cd01469    82 ATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIpqAEREGIIRYAIGVgghfqrENSRE-ELKTIASKP 160

                         170
                  ....*....|....*..
gi 258679414  329 LDITVHNVLDFPQLDTL 345
Cdd:cd01469   161 PEEHFFNVTDFAALKDI 177
vWA_collagen_alpha3-VI-like cd01481
VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable ...
 176-339 4.14e-41

VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238758  Cd Length: 165  Bit Score: 149.01  E-value: 4.14e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTF 255
Cdd:cd01481     1 KDIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRGGSQL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  256 -TGLALTHVLEQNLKPAAGVRPEAA--KVLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLdiT 332
Cdd:cd01481    81 nTGSALDYVVKNLFTKSAGSRIEEGvpQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGARNADLAELQQIAFDPS--F 158


                  ....*..
gi 258679414  333 VHNVLDF 339
Cdd:cd01481   159 VFQVSDF 165
VWA_integrin_invertebrates cd01476
VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have ...
 176-325 7.53e-33

VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.


Pssm-ID: 238753 [Multi-domain]  Cd Length: 163  Bit Score: 125.20  E-value: 7.53e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNhFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQT--EWDLNSFQTKEQVLAAVHHLRYKGGN 253
Cdd:cd01476     1 LDLLFVLDSSGSVRGK-FEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQrvRFNLPKHNDGEELLEKVDNLRFIGGT 79

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 258679414  254 TFTGLALTHVLEQnLKPAAGVRPEAAKVLILVTDGKSQDDVRTAARILKDQ-DIDVFVVGVK---NVDEAELKLLA 325
Cdd:cd01476    80 TATGAAIEVALQQ-LDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRAVpNIETFAVGTGdpgTVDTEELHSIT 154
TSPN smart00210
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ...
 840-1034 1.08e-31

Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin


Pssm-ID: 214560  Cd Length: 184  Bit Score: 122.47  E-value: 1.08e-31
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    840 GFDLMVAFGLVAKEYASIRGVAMEPSalgvVPTFTLFKDAQLMRRVSDIYPATLPPEHTIVFLVRLlpeTPREAFALWQM 919
Cdd:smart00210    1 GQDLLQVFDLPSLSFAIRQVVGPEPG----SPAYRLGDPALVPQPTRDLFPSGLPEDFSLLTTFRQ---TPKSRGVLFAI 73

                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    920 MAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEVTFDlqdAKKIFFGSFHKVHIAVGHSKVRLYVDCRKVAERPIGDAGS 999
Cdd:smart00210   74 YDAQNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFR---NLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQ 150

                           170       180       190
                    ....*....|....*....|....*....|....*..
gi 258679414   1000 PP--TGGFITLGRLAKARGPrsssATFQLQMLQIVCS 1034
Cdd:smart00210  151 PPidTDGIEVRGAQAADRKP----FQGDLQQLKIVCD 183
vWFA cd00198
Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation ...
 176-333 7.82e-31

Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.


Pssm-ID: 238119 [Multi-domain]  Cd Length: 161  Bit Score: 119.21  E-value: 7.82e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYK-GGNT 254
Cdd:cd00198     1 ADIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKGlGGGT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  255 FTGLALTHVLEQNLKPAagvRPEAAKVLILVTDGKSQDD---VRTAARILKDQDIDVFVVGVKN-VDEAELKLLASQPLD 330
Cdd:cd00198    81 NIGAALRLALELLKSAK---RPNARRVIILLTDGEPNDGpelLAEAARELRKLGITVYTIGIGDdANEDELKEIADKTTG 157


                  ...
gi 258679414  331 ITV 333
Cdd:cd00198   158 GAV 160
vWA_micronemal_protein cd01471
Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a ...
 177-330 1.44e-27

Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.


Pssm-ID: 238748 [Multi-domain]  Cd Length: 186  Bit Score: 110.94  E-value: 1.44e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  177 DIIFLVDGSWSIG-HNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSF--QTKEQVLAAVHHLR---YK 250
Cdd:cd01471     2 DLYLLVDGSGSIGySNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPnsTNKDLALNAIRALLslyYP 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  251 GGNTFTGLALTHVlEQNLKPAAGVRPEAAKVLILVTDGKSQDDVRT--AARILKDQDIDVFVVGV-KNVDEAELKLLASQ 327
Cdd:cd01471    82 NGSTNTTSALLVV-EKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTlkEARKLRERGVIIAVLGVgQGVNHEENRSLVGC 160


                  ...
gi 258679414  328 PLD 330
Cdd:cd01471   161 DPD 163
ChlD COG1240
vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and ...
 122-327 1.03e-19

vWFA (von Willebrand factor type A) domain of Mg and Co chelatases [Coenzyme transport and metabolism];


Pssm-ID: 440853 [Multi-domain]  Cd Length: 262  Bit Score: 90.38  E-value: 1.03e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  122 RGSRRLAGATLEPTSLPLRGPDSEKTSEPSIAFTLSRDLPILDHPQFQCTPPTPADIIFLVDGSWS-IGHNHFQQVKDFL 200
Cdd:COG1240    39 LLALPLAGLALLLGLAGLGLLALLLAALLLLLAVLLLLLALALAPLALARPQRGRDVVLVVDASGSmAAENRLEAAKGAL 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  201 ASIITQFaigPDKVQVGLTQYSGDPQTEWDLNSfqTKEQVLAAVHHLRYKGGnTFTGLALTHVLEQnlkpAAGVRPEAAK 280
Cdd:COG1240   119 LDFLDDY---RPRDRVGLVAFGGEAEVLLPLTR--DREALKRALDELPPGGG-TPLGDALALALEL----LKRADPARRK 188

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 258679414  281 VLILVTDGK---SQDDVRTAARILKDQDIDVFVVGV--KNVDEAELKLLASQ 327
Cdd:COG1240   189 VIVLLTDGRdnaGRIDPLEAAELAAAAGIRIYTIGVgtEAVDEGLLREIAEA 240
vWA_collagen_alpha_1-VI-type cd01480
VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable ...
 175-346 1.05e-18

VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.


Pssm-ID: 238757 [Multi-domain]  Cd Length: 186  Bit Score: 85.51  E-value: 1.05e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  175 PADIIFLVDGSWSIGHNHFQQVKDFLASIITQF------AIGPDKVQVGLTQYSGDPQTEW-DLNSFQTKEQVLAAVHHL 247
Cdd:cd01480     2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFlkdyyrKDPAGSWRVGVVQYSDQQEVEAgFLRDIRNYTSLKEAVDNL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  248 RYKGGNTFTGLALTHVLEQNLKpaaGVRPEAAKVLILVTDGKSQ-DDVRTAARILKDQD---IDVFVVGVKNVDEAELKL 323
Cdd:cd01480    82 EYIGGGTFTDCALKYATEQLLE---GSHQKENKFLLVITDGHSDgSPDGGIEKAVNEADhlgIKIFFVAVGSQNEEPLSR 158

                         170       180
                  ....*....|....*....|...
gi 258679414  324 LASQPLdiTVHNVLDFPQLDTLA 346
Cdd:cd01480   159 IACDGK--SALYRENFAELLWSF 179
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1085-1221 9.47e-15

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 78.41  E-value: 9.47e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1085 GPPGQQGHPGPKGEPGPPGQTGPEGPGGQQGSPGTQG----RAVQGPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGL 1160
Cdd:NF038329  126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGpagpQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 258679414 1161 QGPKGMRGL--EGPAGLPGPPGPRGFQGLAGARGTNGERGAPGAVGPTGLPGSKGERGEKGEP 1221
Cdd:NF038329  206 QGPAGPAGPdgEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEA 268
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1122-1221 8.04e-14

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 75.33  E-value: 8.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1122 RAVQGPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRGLEGPaglpgppgprgfQGLAGARGTNGERGAPG 1201
Cdd:NF038329  119 KGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE------------AGPQGPAGKDGEAGAKG 186

                          90       100
                  ....*....|....*....|
gi 258679414 1202 AVGPTGLPGSKGERGEKGEP 1221
Cdd:NF038329  187 PAGEKGPQGPRGETGPAGEQ 206
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1047-1221 5.11e-12

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 69.55  E-value: 5.11e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1047 PALRDGETCPAFPSAcaysseTPGPPGPQGPPGLPGRNGPPGQQGHPGPKGEPGPPGQTGPEGPGGQQGSPGTQGRAVQG 1126
Cdd:NF038329  163 PAGPQGEAGPQGPAG------KDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQG 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414 1127 PMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRGLEGPAglpgppgprgfqGLAGARGTNGERGAPGAVGP- 1205
Cdd:NF038329  237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV------------GPAGKDGQNGKDGLPGKDGKd 304

                         170
                  ....*....|....*...
gi 258679414 1206 --TGLPGSKGERGEKGEP 1221
Cdd:NF038329  305 gqNGKDGLPGKDGKDGQP 322
fn3 pfam00041
Fibronectin type III domain;
750-818 1.35e-11

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 61.66  E-value: 1.35e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 258679414   750 TPNSLQVNWTPP---SGHVLHYRLNYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGESM 818
Cdd:pfam00041   12 TSTSLTVSWTPPpdgNGPITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGEGP 83
VWA_2 pfam13519
von Willebrand factor type A domain;
178-285 1.16e-10

von Willebrand factor type A domain;


Pssm-ID: 463909 [Multi-domain]  Cd Length: 103  Bit Score: 59.61  E-value: 1.16e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   178 IIFLVDGSWSI-----GHNHFQQVKDFLASIITQFAIgpdkVQVGLTQYSGDPQTEWDLNSfqTKEQVLAAVHHLRYKGG 252
Cdd:pfam13519    1 LVFVLDTSGSMrngdyGPTRLEAAKDAVLALLKSLPG----DRVGLVTFGDGPEVLIPLTK--DRAKILRALRRLEPKGG 74

                           90       100       110
                   ....*....|....*....|....*....|...
gi 258679414   253 NTFTGLALTHVLEQnlkpAAGVRPEAAKVLILV 285
Cdd:pfam13519   75 GTNLAAALQLARAA----LKHRRKNQPRRIVLI 103
fn3 pfam00041
Fibronectin type III domain;
376-454 1.20e-10

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 58.97  E-value: 1.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   376 PTPTRLILTHATSSSIHLSWTPALY---PPLKYLIVWQPSRGG-APKEVVVEGPVSSMELGNLTSSTEYLVSVLPVYESG 451
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPPPDgngPITGYEVEYRPKNSGePWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80


                   ...
gi 258679414   452 VGK 454
Cdd:pfam00041   81 EGP 83
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
601-837 1.65e-10

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 65.41  E-value: 1.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  601 VPGNLTSATLGPLSSSTMYTVRVTCFYLGGGSS---VLTGHVTTQKAPSPGQLSVMELPGDAVKLSWLATALSGVLVYQI 677
Cdd:COG3401   187 VTSTTLVDGGGDIEPGTTYYYRVAATDTGGESApsnEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTESDATGYRV 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  678 KWMPLGEGKAREI-SVPGTlgTATLPGLMKHVEYEITILAYYRDGTRSD----------------PVSLRYTPSaasrsp 740
Cdd:COG3401   267 YRSNSGDGPFTKVaTVTTT--SYTDTGLTNGTTYYYRVTAVDAAGNESApsnvvsvttdltppaaPSGLTATAV------ 338

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  741 psslalsseTPNSLQVNWTPPSG-HVLHYRLnYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGESMA 819
Cdd:COG3401   339 ---------GSSSITLSWTASSDaDVTGYNV-YRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNESA 408

                         250       260
                  ....*....|....*....|.
gi 258679414  820 VSATYR---TAACPALHPDSS 837
Cdd:COG3401   409 PSEEVSattASAASGESLTAS 429
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 750-817 6.41e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 57.12  E-value: 6.41e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 258679414  750 TPNSLQVNWTPPS---GHVLHYRLNYTLASGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGES 817
Cdd:cd00063    13 TSTSVTLSWTPPEddgGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGES 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 378-457 8.34e-10

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 56.74  E-value: 8.34e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  378 PTRLILTHATSSSIHLSWTPALY---PPLKYLIVWQPSRGGAPKEV-VVEGPVSSMELGNLTSSTEYLVSVLPVYESGVG 453
Cdd:cd00063     4 PTNLRVTDVTSTSVTLSWTPPEDdggPITGYVVEYREKGSGDWKEVeVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGES 83


                  ....
gi 258679414  454 KSLQ 457
Cdd:cd00063    84 PPSE 87
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 750-817 3.18e-09

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 54.93  E-value: 3.18e-09
                            10        20        30        40        50        60        70
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 258679414    750 TPNSLQVNWTPPS-----GHVLHYRLNYTlaSGSGPEKSISVPGTRSHAVLRDLMSATKYRVLVSAVYRAGES 817
Cdd:smart00060   13 TSTSVTLSWEPPPddgitGYIVGYRVEYR--EEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
vWA_CTRP cd01473
CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an ...
 177-325 4.86e-09

CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.


Pssm-ID: 238750 [Multi-domain]  Cd Length: 192  Bit Score: 57.33  E-value: 4.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  177 DIIFLVDGSWSIGH-NHFQQVKDFLASIITQFAIGPDKVQVGLTQYSG---DPQTEWDLNSFQtKEQVLAAVHHLR--YK 250
Cdd:cd01473     2 DLTLILDESASIGYsNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEknrDVVPFSDEERYD-KNELLKKINDLKnsYR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  251 -GGNTFTGLALTHVLEQNLKpAAGVRPEAAKVLILVTDG----KSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLA 325
Cdd:cd01473    81 sGGETYIVEALKYGLKNYTK-HGNRRKDAPKVTMLFTDGndtsASKKELQDISLLYKEENVKLLVVGVGAASENKLKLLA 159
fn3 pfam00041
Fibronectin type III domain;
645-721 9.45e-09

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 53.57  E-value: 9.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414   645 PSPGQLSVMELPGDAVKLSWLA-TALSGVLV-YQIKWMPLGEGKA-REISVPGTLGTATLPGLMKHVEYEITILAYYRDG 721
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPpPDGNGPITgYEVEYRPKNSGEPwNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 376-453 1.03e-08

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 53.39  E-value: 1.03e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    376 PTPTRLILTHATSSSIHLSWTPALYP-PLKYLIVWQPSRGGAP---KEVVVEGPVSSMELGNLTSSTEYLVSVLPVYESG 451
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEPPPDDgITGYIVGYRVEYREEGsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81


                    ..
gi 258679414    452 VG 453
Cdd:smart00060   82 EG 83
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 1153-1221 2.52e-08

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 51.34  E-value: 2.52e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 258679414  1153 GIPGKTGLQGPKGMRGlegpagLPgppgprgfqGLAGARGTNGERGAPGAVGPTGLPGSKGERGEKGEP 1221
Cdd:pfam01391    1 GPPGPPGPPGPPGPPG------PP---------GPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAP 54
fn3 pfam00041
Fibronectin type III domain;
556-624 3.33e-08

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 52.03  E-value: 3.33e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 258679414   556 GPPRHLTFSDVRYNSTCVSWEA----QRPVRLVKVSYISSDGSHSGQTQ-VPGNLTSATLGPLSSSTMYTVRVT 624
Cdd:pfam00041    1 SAPSNLTVTDVTSTSLTVSWTPppdgNGPITGYEVEYRPKNSGEPWNEItVPGTTTSVTLTGLKPGTEYEVRVQ 74
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 1125-1168 4.81e-08

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 50.57  E-value: 4.81e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 258679414  1125 QGPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRG 1168
Cdd:pfam01391    9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPG 52
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
 1125-1221 1.53e-07

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 49.41  E-value: 1.53e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  1125 QGPMGPPGAKGEKgdqglsglqglsGQQGIPGKTGLQGPKgmrglegpaglpgppgprgfqglagargtnGERGAPGAVG 1204
Cdd:pfam01391    3 PGPPGPPGPPGPP------------GPPGPPGPPGPPGPP------------------------------GEPGPPGPPG 40

                           90
                   ....*....|....*..
gi 258679414  1205 PTGLPGSKGERGEKGEP 1221
Cdd:pfam01391   41 PPGPPGPPGAPGAPGPP 57
fn3 pfam00041
Fibronectin type III domain;
475-539 1.75e-07

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 50.11  E-value: 1.75e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 258679414   475 AVTPRTLHVTW-PPSAG---VTQYLVQYLLATSTGEEQKREVHVGQPEVLLDGLEPGQDYDVSVQSLRG 539
Cdd:pfam00041   10 DVTSTSLTVSWtPPPDGngpITGYEVEYRPKNSGEPWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNG 78
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 475-535 2.41e-07

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 49.54  E-value: 2.41e-07
                            10        20        30        40        50        60
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 258679414    475 AVTPRTLHVTW--PPSAGVTQYLVQYLLATSTGEEQKREVHV--GQPEVLLDGLEPGQDYDVSVQ 535
Cdd:smart00060   11 DVTSTSVTLSWepPPDDGITGYIVGYRVEYREEGSEWKEVNVtpSSTSYTLTGLKPGTEYEFRVR 75
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 475-552 5.74e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 49.03  E-value: 5.74e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  475 AVTPRTLHVTWPPSAG----VTQYLVQYLLATSTGEEQKREVHVGQPEVLLDGLEPGQDYDVSVQSLRGPEASE-VQSIR 549
Cdd:cd00063    11 DVTSTSVTLSWTPPEDdggpITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPpSESVT 90


                  ...
gi 258679414  550 ART 552
Cdd:cd00063    91 VTT 93
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 647-728 8.49e-07

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 48.26  E-value: 8.49e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  647 PGQLSVMELPGDAVKLSWLATALSG--VLVYQIKWMPLGEGKAREISV-PGTLGTATLPGLMKHVEYEITILAYYRDGtR 723
Cdd:cd00063     4 PTNLRVTDVTSTSVTLSWTPPEDDGgpITGYVVEYREKGSGDWKEVEVtPGSETSYTLTGLKPGTEYEFRVRAVNGGG-E 82


                  ....*
gi 258679414  724 SDPVS 728
Cdd:cd00063    83 SPPSE 87
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
 177-325 9.86e-07

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 53.04  E-value: 9.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  177 DIIFLVDGSWSIG-HNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSFQT--KEQVLAAVHHLRyKG-- 251
Cdd:PTZ00441   44 DLYLLVDGSGSIGyHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASkdKEQALIIVKSLR-KTyl 122

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 258679414  252 --GNTFTGLALTHVlEQNLKPAAGvRPEAAKVLILVTDG--KSQDDVRTAARILKDQDIDVFVVGV-KNVDEAELKLLA 325
Cdd:PTZ00441  123 pyGKTNMTDALLEV-RKHLNDRVN-RENAIQLVILMTDGipNSKYRALEESRKLKDRNVKLAVIGIgQGINHQFNRLLA 199
vWA_ATR cd01474
ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, ...
 176-328 6.85e-06

ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.


Pssm-ID: 238751 [Multi-domain]  Cd Length: 185  Bit Score: 48.28  E-value: 6.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  176 ADIIFLVDGSWSIGHNhFQQVKDFLASIITQFaIGPDkVQVGLTQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTF 255
Cdd:cd01474     5 FDLYFVLDKSGSVAAN-WIEIYDFVEQLVDRF-NSPG-LRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPSGQTY 81

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 258679414  256 TGLALTHVLEQNLKPAAGVRpEAAKVLILVTDGKSQDDV----RTAARILKDQDIDVFVVGVKNVDEAELKLLASQP 328
Cdd:cd01474    82 IHEGLENANEQIFNRNGGGR-ETVSVIIALTDGQLLLNGhkypEHEAKLSRKLGAIVYCVGVTDFLKSQLINIADSK 157
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 556-632 9.71e-06

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 44.91  E-value: 9.71e-06
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    556 GPPRHLTFSDVRYNSTCVSWE--AQRPVRLVKVSYISSDGSHSGQTQ---VPGNLTSATLGPLSSSTMYTVRVTCFYLGG 630
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEppPDDGITGYIVGYRVEYREEGSEWKevnVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81


                    ..
gi 258679414    631 GS 632
Cdd:smart00060   82 EG 83
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 645-721 1.46e-05

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 44.53  E-value: 1.46e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414    645 PSPGQLSVMELPGDAVKLSWLATALSGVLVYQIKWMPLGEGKA---REISVPGTLGTATLPGLMKHVEYEITILAYYRDG 721
Cdd:smart00060    2 SPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGsewKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 556-641 1.53e-05

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 44.79  E-value: 1.53e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  556 GPPRHLTFSDVRYNSTCVSWEA----QRPVRLVKVSYISSDGSHSGQ-TQVPGNLTSATLGPLSSSTMYTVRVTCFYLGG 630
Cdd:cd00063     2 SPPTNLRVTDVTSTSVTLSWTPpeddGGPITGYVVEYREKGSGDWKEvEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG 81

                          90
                  ....*....|..
gi 258679414  631 -GSSVLTGHVTT 641
Cdd:cd00063    82 eSPPSESVTVTT 93
vWA_complement_factors cd01470
Complement factors B and C2 are two critical proteases for complement activation. They both ...
 177-327 2.46e-05

Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.


Pssm-ID: 238747 [Multi-domain]  Cd Length: 198  Bit Score: 46.51  E-value: 2.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  177 DIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGLTQYSGDPQTEWDLNSF--QTKEQVLAAVHHLRYK---- 250
Cdd:cd01470     2 NIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFnsNDADDVIKRLEDFNYDdhgd 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  251 GGNTFTGLALTHVLEQnlKPAAGVRPEAA-----KVLILVTDGKSQ---------DDVR------TAARILKDQDIDVFV 310
Cdd:cd01470    82 KTGTNTAAALKKVYER--MALEKVRNKEAfnetrHVIILFTDGKSNmggsplptvDKIKnlvyknNKSDNPREDYLDVYV 159

                         170
                  ....*....|....*...
gi 258679414  311 VGV-KNVDEAELKLLASQ 327
Cdd:cd01470   160 FGVgDDVNKEELNDLASK 177
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
522-824 6.19e-04

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 44.22  E-value: 6.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  522 DGLEPGQDYDVSVQSL---RGPEASEVQSIRARTSALGPPRHLTFSDVRYNSTCVSWEAQRPVRLV--KVsYISSDGSHS 596
Cdd:COG3401   197 GDIEPGTTYYYRVAATdtgGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTESDATgyRV-YRSNSGDGP 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  597 GQTQVPGNLTSATLGPLSSSTMYTVRVTCFYLGGGSSVLTG--HVTTQKAP--SPGQLSVMELPGDAVKLSWLATALSGV 672
Cdd:COG3401   276 FTKVATVTTTSYTDTGLTNGTTYYYRVTAVDAAGNESAPSNvvSVTTDLTPpaAPSGLTATAVGSSSITLSWTASSDADV 355

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  673 LVYQIKWMPLGEGKAREISVPGTLGTATLPGLMKHVEYEITILAYYRDGTRSDPVSLRYTPSAASRSPPSSLALSSETPN 752
Cdd:COG3401   356 TGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAVDAAGNESAPSEEVSATTASAASGESLTASVDAVPL 435

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 258679414  753 SLQVNWTPPSGHVLHYRLNYTLASGSGPEKSISVPGTRSHAVLR---DLMSATKYRVLVSAVYRAGESMAVSATY 824
Cdd:COG3401   436 TDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTAtttDTTTANLSVTTGSLVGGSGASSVTNSVS 510
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 1126-1168 1.47e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 42.58  E-value: 1.47e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 258679414 1126 GPMGPPGAKGEKGDQGLSGLQGLSGQQGIPGKTGLQGPKGMRG 1168
Cdd:NF038329  293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
FN3 COG3401
Fibronectin type 3 domain [General function prediction only];
362-671 2.68e-03

Fibronectin type 3 domain [General function prediction only];


Pssm-ID: 442628 [Multi-domain]  Cd Length: 603  Bit Score: 41.91  E-value: 2.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  362 PVKPAAGTRVLDPLPTPTRLILTHATSSSIHLSWTPALYPPLKYLIVWQPSRGGAPKEVVVEGPVSSMELGNLTSSTEYL 441
Cdd:COG3401   220 PSNEVSVTTPTTPPSAPTGLTATADTPGSVTLSWDPVTESDATGYRVYRSNSGDGPFTKVATVTTTSYTDTGLTNGTTYY 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  442 VSVLPVYESGV--GKS--LQGRATTAPLPPPGPLTLAAVTPRTLHVTWPPSAG--VTQYLVqYLLATSTGEEQKREVHVG 515
Cdd:COG3401   300 YRVTAVDAAGNesAPSnvVSVTTDLTPPAAPSGLTATAVGSSSITLSWTASSDadVTGYNV-YRSTSGGGTYTKIAETVT 378

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  516 QPEVLLDGLEPGQDYDVSVQSL--RGPEASEVQSIRARTSALGPPRHLTFSDVRYNSTCVSWEAQRPV--RLVKVSYISS 591
Cdd:COG3401   379 TTSYTDTGLTPGTTYYYKVTAVdaAGNESAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASaaSNPGVSAAVL 458

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  592 DGSHSGQTQVPGNLTSATLGPLSSSTMYTVRVTCFYLGGGSSVLTGHVTTQKAPSPGQLSVMELPGDAVKLSWLATALSG 671
Cdd:COG3401   459 ADGGDTGNAVPFTTTSSTVTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTV 538
Periplasmic_Binding_Protein_Type_2 cd00648
Type 2 periplasmic binding fold superfamily; This evolutionary model and hierarchy represent ...
 285-385 9.62e-03

Type 2 periplasmic binding fold superfamily; This evolutionary model and hierarchy represent the ligand-binding domains found in solute binding proteins that serve as initial receptors in the transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1 (PBP1), but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The origin of PBP module can be traced across the distant phyla, including eukaryotes, archebacteria, and prokaryotes. The majority of PBP2 proteins are involved in the uptake of a variety of soluble substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction. The substrate binding domain of the LysR transcriptional regulators and the oligopeptide-like transport systems also contain the type 2 periplasmic binding fold and thus they are significantly homologous to that of the PBP2; however, these two families are grouped into a separate hierarchy of the PBP2 superfamily due to the large number of protein sequences.


Pssm-ID: 270214 [Multi-domain]  Cd Length: 196  Bit Score: 38.71  E-value: 9.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 258679414  285 VTDGKSQDDVRTAariLKDQDIDVFVVGVKNVDEAELKLLASQPLDItvhnvldfpqLDTLAPLLSRLICQK---IQGRG 361
Cdd:cd00648    33 LVPGSSIGTLIEA---LAAGDADVAVGPIAPALEAAADKLAPGGLYI----------VPELYVGGYVLVVRKgssIKGLL 99

                          90       100
                  ....*....|....*....|....
gi 258679414  362 PVKPAAGTRVLDPLPTPTRLILTH 385
Cdd:cd00648   100 AVADLDGKRVGVGDPGSTAVRQAR 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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