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Conserved domains on  [gi|162287182|ref|NP_083168|]
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sperm-associated antigen 17 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PapD-like super family cl20768
Flagellar-associated PapD-like; This domain is a putative PapD periplasmic pilus chaperone ...
 2173-2239 2.20e-11

Flagellar-associated PapD-like; This domain is a putative PapD periplasmic pilus chaperone protein family.


The actual alignment was detected with superfamily member pfam14874:

Pssm-ID: 373355  Cd Length: 102  Bit Score: 62.49  E-value: 2.20e-11
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 162287182  2173 FHLLPPSVKFGVLKEGHTYATIVKLKNVGVDFCRFRVKQPP-PSTGLKVTYKPGPVAAGLQAELKVEL 2239
Cdd:pfam14874    4 LEVSPRVVHFGGVLPGNRYALTVRLTNTSTVPCRYRVRVPAvPKPFLSVEYPHQFVAPGLTTEAQVEL 71
 
Name Accession Description Interval E-value
PapD-like pfam14874
Flagellar-associated PapD-like; This domain is a putative PapD periplasmic pilus chaperone ...
 2173-2239 2.20e-11

Flagellar-associated PapD-like; This domain is a putative PapD periplasmic pilus chaperone protein family.


Pssm-ID: 373355  Cd Length: 102  Bit Score: 62.49  E-value: 2.20e-11
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 162287182  2173 FHLLPPSVKFGVLKEGHTYATIVKLKNVGVDFCRFRVKQPP-PSTGLKVTYKPGPVAAGLQAELKVEL 2239
Cdd:pfam14874    4 LEVSPRVVHFGGVLPGNRYALTVRLTNTSTVPCRYRVRVPAvPKPFLSVEYPHQFVAPGLTTEAQVEL 71
 
Name Accession Description Interval E-value
PapD-like pfam14874
Flagellar-associated PapD-like; This domain is a putative PapD periplasmic pilus chaperone ...
 2173-2239 2.20e-11

Flagellar-associated PapD-like; This domain is a putative PapD periplasmic pilus chaperone protein family.


Pssm-ID: 373355  Cd Length: 102  Bit Score: 62.49  E-value: 2.20e-11
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 162287182  2173 FHLLPPSVKFGVLKEGHTYATIVKLKNVGVDFCRFRVKQPP-PSTGLKVTYKPGPVAAGLQAELKVEL 2239
Cdd:pfam14874    4 LEVSPRVVHFGGVLPGNRYALTVRLTNTSTVPCRYRVRVPAvPKPFLSVEYPHQFVAPGLTTEAQVEL 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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