|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
164-711 |
1.18e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 164 QLATLTSSLATVTQEKSRMEASyLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDH 243
Cdd:COG1196 233 KLRELEAELEELEAELEELEAE-LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 244 ALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQEL 323
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 324 QQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDL 403
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 404 ENKTLALAASSRSSLDIHGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKATALYYQQ 483
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 484 ELKQLKEEferykmrAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQLH 563
Cdd:COG1196 552 VVEDDEVA-------AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 564 RQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGVGGGGLGDPADTASSDSLT 643
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 268370067 644 QALQLAAANEPTFFLYAEQLARKEVEiTSLRKQKHRLEVEAHQLQERLLEEGERHREEVGALQSHIEK 711
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQL-EAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
153-719 |
1.74e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 1.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQlATLTSSLATVTQEKSRMEASYLADKKKmkqDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQ 232
Cdd:COG1196 197 ELERQLEPLERQ-AEKAERYRELKEELKELEAELLLLKLR---ELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 233 QHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREalagrayAADQVEGFELQTKQLTREVEELKGELQTIRDE 312
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE-------LEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 313 KNRPDPRLQELQQEAARLKSHfQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQ 392
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEA-LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 393 KLKERLLQLDLENKTLALAASSRSSLDihgdessldinvlkdkmEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAAD 472
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEE-----------------AELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 473 GEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDW 552
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLK 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 553 KQELARLQQLHRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKD----LELEQLRSVALSSGLPGRRSPVGGVGGG 628
Cdd:COG1196 568 AAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYyvlgDTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 629 GLGDPADTASSDSLTQALQLAAANEptfflyAEQLARKEVEITSLRKQKHRLEVEAHQLQERLLEEGERHREEVGALQSH 708
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLA------ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570
....*....|.
gi 268370067 709 IEKNMRDQSRE 719
Cdd:COG1196 722 EEEALEEQLEA 732
|
|
| GRIP |
pfam01465 |
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in ... |
720-763 |
2.90e-13 |
|
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi. The GRIP domain contains a completely conserved tyrosine residue. At least some of these domains have been shown to bind to GTPase Arl1, see structures in.
Pssm-ID: 460221 [Multi-domain] Cd Length: 44 Bit Score: 64.30 E-value: 2.90e-13
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 268370067 720 GANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVL 763
Cdd:pfam01465 1 GANLEYLKNVLLQFLESKESSERKQLLPVIATLLKFSPEEEQKI 44
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-607 |
2.72e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 2.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 160 QLKTQLATLTSSLATVTQEKSRMEASyLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQE 239
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEE-LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 240 QSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPR 319
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 320 LQELQQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTY--EKAKQKDQLAIQKLKER 397
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAleAALAAALQNIVVEDDEV 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 398 LLQLDLENKTLALAASSRSSLDIHGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKAT 477
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 478 ALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISL-----RLSCEELESQHQQEAEDW 552
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELeeallAEEEEERELAEAEEERLE 718
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 268370067 553 KQELARLQQLHRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLR 607
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
|
| Grip |
smart00755 |
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245; |
720-765 |
4.84e-11 |
|
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245;
Pssm-ID: 197860 Cd Length: 46 Bit Score: 58.00 E-value: 4.84e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 268370067 720 GANLEYLKNIIYRFLTLPDSLgRQQTLTAILTILHFSPEEKQVLMR 765
Cdd:smart00755 1 EANFEYLKNVLLQFLTLRESE-RETLLPVISTVLQLSPEEMQKLLE 45
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-534 |
4.70e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 4.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 207 ERGRLEGDLKVLQEQIAETKARLIT--QQHDRAQEQ------------SDHALMLRELQKLLQEERTQRQDLELRLEETR 272
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAElrKELEELEEEleqlrkeleelsRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 273 EALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQAQLQqemrktalAEDQL 352
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE--------RLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 353 RQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASSRSSldiHGDESSLDINVL 432
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS---ELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 433 KDKMEKLKKLLQVA-ARKSQVTLDVEKLcdpeimanseaadgekatalyyQQELKQLKEEF-ERYKMRAQVVLKSKNTKD 510
Cdd:TIGR02168 907 ESKRSELRRELEELrEKLAQLELRLEGL----------------------EVRIDNLQERLsEEYSLTLEEAEALENKIE 964
|
330 340
....*....|....*....|....
gi 268370067 511 GslgkELEAAQEQLAELKDKYISL 534
Cdd:TIGR02168 965 D----DEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
258-619 |
5.92e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 5.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 258 RTQRQDLELRLEETREALAgRAYA-----ADQVEGFELQTKQ------LTREVEELKGELQTIRDEKNRpdPRLQELQQE 326
Cdd:COG1196 171 KERKEEAERKLEATEENLE-RLEDilgelERQLEPLERQAEKaeryreLKEELKELEAELLLLKLRELE--AELEELEAE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 327 AARLKSHfQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENK 406
Cdd:COG1196 248 LEELEAE-LEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 407 TLALAASSRSSLDIhgdESSLDINVLKDKMEKLKKLLQVAARKSQvtldveklcdpEIMANSEAADGEKATALYYQQELK 486
Cdd:COG1196 327 ELEEELEELEEELE---ELEEELEEAEEELEEAEAELAEAEEALL-----------EAEAELAEAEEELEELAEELLEAL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 487 QLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQLHRQE 566
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 268370067 567 LERsqldfRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRR 619
Cdd:COG1196 473 ALL-----EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
153-608 |
7.97e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.39 E-value: 7.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLATVTQEKSRMEASyladkKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARL--I 230
Cdd:PRK03918 204 EVLREINEISSELPELREELEKLEKEVKELEEL-----KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 231 TQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFElqtkqltREVEELKGELQTIR 310
Cdd:PRK03918 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE-------ERLEELKKKLKELE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 311 DEKNRPDPRLQELqQEAARLKSHFQaqlQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLA 390
Cdd:PRK03918 352 KRLEELEERHELY-EEAKAKKEELE---RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 391 IQKLKE---------RLLQLDLENKTLAlaassrssldihgdESSLDINVLKDKMEKLKKLLQvAARKSQVTLDVEKLCD 461
Cdd:PRK03918 428 IEELKKakgkcpvcgRELTEEHRKELLE--------------EYTAELKRIEKELKEIEEKER-KLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 462 PEIMANSEAADG----EKATALYYQQELKQLKEEFERYKMRA------QVVLKSKNTKDGSLGKELEAAQEQLAELKDKY 531
Cdd:PRK03918 493 SELIKLKELAEQlkelEEKLKKYNLEELEKKAEEYEKLKEKLiklkgeIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 532 ISLRlscEELESQHQQEAEDWKQELARLQQLHRQELE----RSQLDFRDRTLKLEEElhkQRDRALAVLAEKDLELEQLR 607
Cdd:PRK03918 573 AELL---KELEELGFESVEELEERLKELEPFYNEYLElkdaEKELEREEKELKKLEE---ELDKAFEELAETEKRLEELR 646
|
.
gi 268370067 608 S 608
Cdd:PRK03918 647 K 647
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
165-390 |
5.55e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.01 E-value: 5.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 165 LATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHA 244
Cdd:COG4942 7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 245 LMLRELQKLLQEERTQRQDLELRL------------------EETREALAGRAYAADQVEGFELQTKQLTREVEELKGEL 306
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLralyrlgrqpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 307 QTIRDEKNRPDPRLQELQQEAARLKSHFQ------AQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTY 380
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAerqkllARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
250
....*....|
gi 268370067 381 EKAKQKDQLA 390
Cdd:COG4942 247 GFAALKGKLP 256
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-401 |
1.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLATVTQEKSRMEASY------LADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETK 226
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIeelqkeLYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 227 ARLITQQ---HDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREalagrayaadQVEGFELQTKQLTREVEELK 303
Cdd:TIGR02168 330 SKLDELAeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE----------QLETLRSKVAQLELQIASLN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 304 GELQTIRDEKNRPDPRLQELQQEaarlkshfqaQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKA 383
Cdd:TIGR02168 400 NEIERLEARLERLEDRRERLQQE----------IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250
....*....|....*...
gi 268370067 384 KQKDQLAIQKLKERLLQL 401
Cdd:TIGR02168 470 LEEAEQALDAAERELAQL 487
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
166-404 |
1.30e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 166 ATLTSSLATVTQEKSRMEASyLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAEtkarlitQQHDRAQEQSDhal 245
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERS-IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE-------ERKRRDKLTEE--- 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 246 mLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADqvegfelqtkQLTREVEELKGELQTIRDEKNRPDPRLQELQQ 325
Cdd:TIGR02169 359 -YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE----------KLKREINELKRELDRLQEELQRLSEELADLNA 427
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 268370067 326 EAARLKshfQAQLQQEMRKTALAEdqlrqqsqveeqRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLE 404
Cdd:TIGR02169 428 AIAGIE---AKINELEEEKEDKAL------------EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
193-400 |
3.81e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.95 E-value: 3.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 193 MKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLIT--QQH---DRAQEQSDHALMLRELQKLLQEERTQRQDLELR 267
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNglvDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 268 LEETREALAGRAYAADQVEGfELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQAQLQQEMRKTAL 347
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEA 320
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 268370067 348 AEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQkDQLAIQKLKERLLQ 400
Cdd:COG3206 321 ELEALQAREASLQAQLAQLEARLAELPELEAELRRLER-EVEVARELYESLLQ 372
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
131-398 |
4.25e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 4.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 131 EEASGSESGVSSSSGDGPSAGSEMDKRVHQLKTQLATLTSSLATVTQEKSRME------ASYLADKKKMKQDLEDANKKA 204
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSkeltelEAEIEELEERLEEAEEELAEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 205 EEERGRLEGDLKVLQEQIAETKARlitqqhdraqeqsdhalmLRELQKLLQEERTQRQDLELRLEETREALagrAYAADQ 284
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKALREA------------------LDELRAELTLLNEEAANLRERLESLERRI---AATERR 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 285 VEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEaarlkshfQAQLQQEMRKTALAEDQLRQQSQVEEQRVA 364
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE--------RASLEEALALLRSELEELSEELRELESKRS 911
|
250 260 270
....*....|....*....|....*....|....
gi 268370067 365 ALESQISEVSELLGTYEKAKQKDQLAIQKLKERL 398
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
173-588 |
4.33e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 4.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 173 ATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQK 252
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 253 LLQ--EERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKqlTREVEELKGELQTIRDEKNRPDP-RLQELQQEAAR 329
Cdd:PTZ00121 1449 AKKkaEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK--AEEAKKKADEAKKAAEAKKKADEaKKAEEAKKADE 1526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 330 LKSHFQAQLQQEMRKTALAE--DQLRQQSQVEE-QRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENK 406
Cdd:PTZ00121 1527 AKKAEEAKKADEAKKAEEKKkaDELKKAEELKKaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKK 1606
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 407 TLALAASSRSSLDIHGDESSLDINVlKDKMEKLKKLLQVAARKSQVTLDVEKLCD--PEIMANSEAADGEKATALYYQQE 484
Cdd:PTZ00121 1607 MKAEEAKKAEEAKIKAEELKKAEEE-KKKVEQLKKKEAEEKKKAEELKKAEEENKikAAEEAKKAEEDKKKAEEAKKAEE 1685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 485 LKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEElESQHQQEAEDWKQELARLQQLHR 564
Cdd:PTZ00121 1686 DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE-DKKKAEEAKKDEEEKKKIAHLKK 1764
|
410 420
....*....|....*....|....
gi 268370067 565 QELERSQLDFRDRTLKLEEELHKQ 588
Cdd:PTZ00121 1765 EEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
188-600 |
6.08e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 6.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 188 ADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELR 267
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKA 1413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 268 LEETREALAGRAYAADQVEGFELQTK-QLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQAQLQQEMRKTA 346
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKaEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 347 LAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASSRSSLDIHGDESS 426
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 427 LDINVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADgEKATALYYQQELKQLKEEFEryKMRAQVVLKSK 506
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK-IKAEELKKAEEEKKKVEQLK--KKEAEEKKKAE 1650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 507 NTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELAR-LQQLHRQELERSQldfRDRTLKLEEEL 585
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKkAEELKKKEAEEKK---KAEELKKAEEE 1727
|
410
....*....|....*
gi 268370067 586 HKQRDRALAVLAEKD 600
Cdd:PTZ00121 1728 NKIKAEEAKKEAEED 1742
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-528 |
2.64e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 203 KAEEERGRLEGDLKVLQEQIAEtkarlITQQHDRAQEQSDHALMLRELQKLLQEERtqrqdLELRLEETREALAGRAYAA 282
Cdd:TIGR02169 174 KALEELEEVEENIERLDLIIDE-----KRQQLERLRREREKAERYQALLKEKREYE-----GYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 283 DQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQEL-QQEAARLKSH---FQAQLQQEMRKTALAEDQLRQ---Q 355
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKigeLEAEIASLERSIAEKERELEDaeeR 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 356 SQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLlqLDLENKTLALAASSRSSLDIHGDESSlDINVLKDK 435
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL--EDLRAELEEVDKEFAETRDELKDYRE-KLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 436 MEKLK----KLLQVAARKSQVTLDVE-KLCD-----PEIMANSEAADGEKATAlyyQQELKQLKEEFERYKMRaqvvLKS 505
Cdd:TIGR02169 401 INELKreldRLQEELQRLSEELADLNaAIAGieakiNELEEEKEDKALEIKKQ---EWKLEQLAADLSKYEQE----LYD 473
|
330 340
....*....|....*....|...
gi 268370067 506 KNTKDGSLGKELEAAQEQLAELK 528
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAE 496
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
484-616 |
3.19e-07 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 52.84 E-value: 3.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 484 ELKQLKEEFERYKMRAQVVLKSK-----NTKDGS-----------------LGKELEAAQEQLAELKDKYISLRLSCEEL 541
Cdd:pfam09787 1 NLESAKQELADYKQKAARILQSKekliaSLKEGSgvegldsstaltleleeLRQERDLLREEIQKLRGQIQQLRTELQEL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 542 ESQHQQEAEDWKQELARLQ----------QLHRQELERSQLDFRdrtlKLEEELHKQRDRALAVLAEKDLELEQLRSVAL 611
Cdd:pfam09787 81 EAQQQEEAESSREQLQELEeqlatersarREAEAELERLQEELR----YLEEELRRSKATLQSRIKDREAEIEKLRNQLT 156
|
....*
gi 268370067 612 SSGLP 616
Cdd:pfam09787 157 SKSQS 161
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
192-615 |
8.21e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 8.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 192 KMKQDLEDANKKAEeergRLEGDLKVLQEQIAETKARLitqqhDRAQEQSDHALMLRELQKllQEERTQRQDLELRLEET 271
Cdd:TIGR02168 169 KYKERRKETERKLE----RTRENLDRLEDILNELERQL-----KSLERQAEKAERYKELKA--ELRELELALLVLRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 272 REALAG----RAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKshfqaqlqqemrktal 347
Cdd:TIGR02168 238 REELEElqeeLKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE---------------- 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 348 aedqlrQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLdlenktlalaASSRSSLDIHGDESSL 427
Cdd:TIGR02168 302 ------QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL----------KEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 428 DINVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKATALYYQQELKQLKEEFERYKMRAQvvlkskN 507
Cdd:TIGR02168 366 ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL------Q 439
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 508 TKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQLHRQELERSQLDFRDRTLKLEEELHK 587
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS 519
|
410 420
....*....|....*....|....*...
gi 268370067 588 QRDRALAVLAEKDLELEQLRSVALSSGL 615
Cdd:TIGR02168 520 GILGVLSELISVDEGYEAAIEAALGGRL 547
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
177-707 |
1.65e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 177 QEKSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARlitQQHDRAQEQSDHALMLRELQKLLQE 256
Cdd:PTZ00121 1084 KEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARK---AEDARKAEEARKAEDAKRVEIARKA 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 257 ERTQRQDLELRLEETREALAGRAyAADQVEGFELQTKQLTREVEELKGELQTIRDEKNR---PDPRLQELQQEAARLKSH 333
Cdd:PTZ00121 1161 EDARKAEEARKAEDAKKAEAARK-AEEVRKAEELRKAEDARKAEAARKAEEERKAEEARkaeDAKKAEAVKKAEEAKKDA 1239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 334 FQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLaiqKLKERLLQLDlENKTLALAAS 413
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA---KKAEEKKKAD-EAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 414 SRSSLDIHGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGE--KATALYYQQELK----Q 487
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAkkKADAAKKKAEEKkkadE 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 488 LKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEEL-----ESQHQQEAEDWKQELARLQQL 562
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAkkkaeEAKKAEEAKKKAEEAKKADEA 1475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 563 HRQELERSQLDfrdrTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSSGLPGRRSPVGGVGGGGLGDPADTASSDSL 642
Cdd:PTZ00121 1476 KKKAEEAKKAD----EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 268370067 643 TQALQLAAANEPTfflYAEQLARKEVEitslRKQKHRLEVEAHQLQERLLEEGERHREEVGALQS 707
Cdd:PTZ00121 1552 KKAEELKKAEEKK---KAEEAKKAEED----KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
129-613 |
1.81e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 129 KSEEASGSESGVSSSSGDGPSAGSEmDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEER 208
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELKKAAAA-KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 209 GRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAyAADQVEGF 288
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK-AEEKKKAD 1549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 289 ELQTKQLTREVEELKGELQTIRDE--KNRPDPRLQELQQ-EAARLKSHFQAQLQQEMRKTalaeDQLRQQsqvEEQRVAA 365
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEedKNMALRKAEEAKKaEEARIEEVMKLYEEEKKMKA----EEAKKA---EEAKIKA 1622
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 366 leSQISEVSELLGTYEKAKQKDQLAIQKlKERLLQLDLENKTLALAASSRSSLDIHGDESsldinvLKDKMEKLKKLLQV 445
Cdd:PTZ00121 1623 --EELKKAEEEKKKVEQLKKKEAEEKKK-AEELKKAEEENKIKAAEEAKKAEEDKKKAEE------AKKAEEDEKKAAEA 1693
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 446 AARKSQVTLDVEKLcdpeimANSEAADGEKATALYYQQELKQLKEEferykmraqvVLKSKNTKDGSLGKELEAAQEQla 525
Cdd:PTZ00121 1694 LKKEAEEAKKAEEL------KKKEAEEKKKAEELKKAEEENKIKAE----------EAKKEAEEDKKKAEEAKKDEEE-- 1755
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 526 elKDKYISLRLSCEELESQHQQEAED-WKQELARLQQLHRQELERSQLDFRDRTLKLEEelhKQRDRALAVLAEKDLELE 604
Cdd:PTZ00121 1756 --KKKIAHLKKEEEKKAEEIRKEKEAvIEEELDEEDEKRRMEVDKKIKDIFDNFANIIE---GGKEGNLVINDSKEMEDS 1830
|
....*....
gi 268370067 605 QLRSVALSS 613
Cdd:PTZ00121 1831 AIKEVADSK 1839
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
154-694 |
1.88e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 1.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 154 MDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQ 233
Cdd:pfam15921 283 LTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEAR 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 234 HDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALagrayaaDQVEGFELQTKQLTREVEELKGELQtirdek 313
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLW-------DRDTGNSITIDHLRRELDDRNMEVQ------ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 314 nrpdpRLQELQQEaarLKSHFQAQLQQEMRKTALAEDQLrqqsqveeQRVAALESQISEVSELLGTYEKAKQKDQLAIQK 393
Cdd:pfam15921 430 -----RLEALLKA---MKSECQGQMERQMAAIQGKNESL--------EKVSSLTAQLESTKEMLRKVVEELTAKKMTLES 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 394 LKERL--LQLDLENKTLALAASS------RSSLDIHGDEssldINVLKDKMEKLKKL--------LQVAARKSQVTLDVE 457
Cdd:pfam15921 494 SERTVsdLTASLQEKERAIEATNaeitklRSRVDLKLQE----LQHLKNEGDHLRNVqtecealkLQMAEKDKVIEILRQ 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 458 KLcdpEIMANSEAADGEKATALyyQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLgKELEAAQEQLAELKDKYI---SL 534
Cdd:pfam15921 570 QI---ENMTQLVGQHGRTAGAM--QVEKAQLEKEINDRRLELQEFKILKDKKDAKI-RELEARVSDLELEKVKLVnagSE 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 535 RL-SCEELESQHQQEAEDWKQELARLQQLhRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSVALSS 613
Cdd:pfam15921 644 RLrAVKDIKQERDQLLNEVKTSRNELNSL-SEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSD 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 614 GLPGRRSPVGGVGGGGLGDPADTASSDSLTQALQLAAANEPTFFLYAEQLA-RKEVEITSLRKQKHRLEVEAHQLQERLL 692
Cdd:pfam15921 723 GHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKlSQELSTVATEKNKMAGELEVLRSQERRL 802
|
..
gi 268370067 693 EE 694
Cdd:pfam15921 803 KE 804
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
204-377 |
8.49e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 8.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 204 AEEERGRLEGDLKVLQEQIAETKARL--ITQQHDRAQEQSDHALMLREL---QKLLQEERTQRQDLELRLEETREALAGR 278
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLeaLEAELDALQERREALQRLAEYswdEIDVASAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 279 AYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQ---QEAARLKSHFQAQLQQEMRKTALAEDQLRQQ 355
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdrlEAAEDLARLELRALLEERFAAALGDAVEREL 767
|
170 180
....*....|....*....|..
gi 268370067 356 SQVEEQRVAALESQISEVSELL 377
Cdd:COG4913 768 RENLEERIDALRARLNRAEEEL 789
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
153-716 |
9.12e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 9.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQdlEDANKKAEEERGRLEGDLKvlQEQIAETKARLITQ 232
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKA--EEAKKKADAAKKKAEEAKK--AAEAAKAEAEAAAD 1357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 233 QHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQltreVEELKGELQTIRde 312
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK----ADEAKKKAEEKK-- 1431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 313 knrpdpRLQELQQEAARLKSHFQAQLQ-QEMRKTALAEDQLRQQSQVEEQRVAALESQISEvsELLGTYEKAKQKDQLAI 391
Cdd:PTZ00121 1432 ------KADEAKKKAEEAKKADEAKKKaEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKADEAK 1503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 392 QKLKERLLQLDLENktlalAASSRSSLDIHGDESSLDINVLKdKMEKLKKLLQVaaRKSQvtlDVEKLCDPEIMANSEAA 471
Cdd:PTZ00121 1504 KAAEAKKKADEAKK-----AEEAKKADEAKKAEEAKKADEAK-KAEEKKKADEL--KKAE---ELKKAEEKKKAEEAKKA 1572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 472 DGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQL---AELKDKYISLRLSCEELESQHQQE 548
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkaEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 549 AEDWKQELARLQQLHRQELERSQldfRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSvalssglpgrrspvggvggg 628
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKK---KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK-------------------- 1709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 629 glgdpadtASSDSLTQALQLAAANEPTFfLYAEQLARKEVEITSLRKQKHRLEVEAHQLQERLLEEGERHREEVGALQSH 708
Cdd:PTZ00121 1710 --------KEAEEKKKAEELKKAEEENK-IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
....*...
gi 268370067 709 IEKNMRDQ 716
Cdd:PTZ00121 1781 IEEELDEE 1788
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
153-380 |
2.15e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 2.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKK--KMKQDLEDANKKAEEERGRLEGD---LKVLQEQIAETKA 227
Cdd:PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRieRLEERREDLEELIAERRETIEEKrerAEELRERAAELEA 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 228 RLiTQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQ 307
Cdd:PRK02224 552 EA-EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLA 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 308 TIRDEKNR-----PDPRLQELQQEAARLKShFQAQLQQEMRKTALAED-----------------QLRQQSQVEEQRVAA 365
Cdd:PRK02224 631 EKRERKREleaefDEARIEEAREDKERAEE-YLEQVEEKLDELREERDdlqaeigaveneleeleELRERREALENRVEA 709
|
250
....*....|....*
gi 268370067 366 LESQISEVSELLGTY 380
Cdd:PRK02224 710 LEALYDEAEELESMY 724
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
206-608 |
2.39e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 206 EERGRLEGDLKVLQEQIAETKArlITQQHDRAQEQsdhalmLRELQKLLQEERTQRQDLElRLEETREALAGRAYAADQV 285
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAE--LQEELEELEEE------LEELEAELEELREELEKLE-KLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 286 EGFELQTKQLTREVEELKGELQTIRDEKNRpdprLQELQQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAA 365
Cdd:COG4717 142 AELPERLEELEERLEELRELEEELEELEAE----LAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 366 LESQISEVSELLGTYEKAKQKDQLAiQKLKERLLQLDLENKTLALAASSRSSLD--------------IHGDESSLDINV 431
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALE-ERLKEARLLLLIAAALLALLGLGGSLLSliltiagvlflvlgLLALLFLLLARE 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 432 LKDKMEKLKKLLQVAARKSQVTLDVEKLCDpEIMANSEAADGEKATALYYQQELKQLKEEFERYK--MRAQVVLKSKNTK 509
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLA-ALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAAL 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 510 DGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLqQLHRQELERSQLDfrdrtlKLEEELHKQR 589
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAL-DEEELEEELEELE------EELEELEEEL 448
|
410
....*....|....*....
gi 268370067 590 DRALAVLAEKDLELEQLRS 608
Cdd:COG4717 449 EELREELAELEAELEQLEE 467
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
298-550 |
2.89e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 298 EVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQaQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSEll 377
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELAELEKEIAELRA-- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 378 gtyEKAKQKDQLAIQKlkeRLLQLDLENKTLALAASSRSSLDihgdessldinvLKDKMEKLKKLLQvaARKSQVTldve 457
Cdd:COG4942 98 ---ELEAQKEELAELL---RALYRLGRQPPLALLLSPEDFLD------------AVRRLQYLKYLAP--ARREQAE---- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 458 klcdpEIMANSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLS 537
Cdd:COG4942 154 -----ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|...
gi 268370067 538 CEELESQHQQEAE 550
Cdd:COG4942 229 IARLEAEAAAAAE 241
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
298-556 |
3.39e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.23 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 298 EVEELKGELQTIRDEKNRPdpRLQELQQEAARLKSHFqaqlqqEMRKTALAEdqlrqqsqVEEQRVAALESQISEVSELL 377
Cdd:PRK05771 32 HIEDLKEELSNERLRKLRS--LLTKLSEALDKLRSYL------PKLNPLREE--------KKKVSVKSLEELIKDVEEEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 378 GTYEK-AKQKDQlAIQKLKERLLQLDLENKTLALAASSRSSLDIHGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLDV 456
Cdd:PRK05771 96 EKIEKeIKELEE-EISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYIST 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 457 EKLCDPeIMANSEAADGEKATAlyyqqELKQLkeEFERYKM----RAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYI 532
Cdd:PRK05771 175 DKGYVY-VVVVVLKELSDEVEE-----ELKKL--GFERLELeeegTPSELIREIKEELEEIEKERESLLEELKELAKKYL 246
|
250 260
....*....|....*....|....
gi 268370067 533 SLRLSCEELESQHQQEAEDWKQEL 556
Cdd:PRK05771 247 EELLALYEYLEIELERAEALSKFL 270
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
197-332 |
3.61e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 197 LEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALa 276
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAAL- 371
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 268370067 277 GRAYAADQvEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKS 332
Cdd:COG4913 372 GLPLPASA-EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
289-398 |
5.77e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 46.11 E-value: 5.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 289 ELQTKQLTREVEELKGELQTIRDEKNRpdprLQELQQEAARLKSHFQAQLQQEMRKTAlAEDQL--RQQSQVE--EQRVA 364
Cdd:PRK09039 73 RQGNQDLQDSVANLRASLSAAEAERSR----LQALLAELAGAGAAAEGRAGELAQELD-SEKQVsaRALAQVEllNQQIA 147
|
90 100 110
....*....|....*....|....*....|....
gi 268370067 365 ALESQISEVSELLGTYEKAKQKDQLAIQKLKERL 398
Cdd:PRK09039 148 ALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
177-700 |
8.62e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 8.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 177 QEKSRMEASYLADKkkMKQDLEDAnKKAEEERGRLEGDL--KVLQEQIAETKARLITQQHDRAQE--QSDHALMLRELQK 252
Cdd:PTZ00121 1221 EDAKKAEAVKKAEE--AKKDAEEA-KKAEEERNNEEIRKfeEARMAHFARRQAAIKAEEARKADElkKAEEKKKADEAKK 1297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 253 llQEERTQRQDLELRLEETREAlagrAYAADQVEGFELQTKQLTREVEELK--GELQTIRDEKNRPDPRLQELQQEAARL 330
Cdd:PTZ00121 1298 --AEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKKADAAKKKAEEAKkaAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 331 KShfqaqlQQEMRKTALAEDQLRQQSQVEEQRVAALESQisEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKtlAL 410
Cdd:PTZ00121 1372 KK------EEAKKKADAAKKKAEEKKKADEAKKKAEEDK--KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK--AE 1441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 411 AASSRSSLDIHGDEssldinvlKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKATALYYQQELKQLKE 490
Cdd:PTZ00121 1442 EAKKADEAKKKAEE--------AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 491 EFERykmrAQVVLKSKNTKDGSLGKELEAAQEqlAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQLHR--QELE 568
Cdd:PTZ00121 1514 EAKK----AEEAKKADEAKKAEEAKKADEAKK--AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRkaEEAK 1587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 569 RSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRsvalssglpgrrspvGGVGGGGLGDPADTASSDSLTQALQL 648
Cdd:PTZ00121 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK---------------KAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 268370067 649 AAANEPTFfLYAEQLARKEVEITSLRKQKHRLEVEAHQLQERLLEEGERHRE 700
Cdd:PTZ00121 1653 KKAEEENK-IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
153-338 |
1.08e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLATVTQEksrmeasyLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAetkarlitq 232
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDE--------LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK--------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 233 qhdRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDE 312
Cdd:COG1579 77 ---KYEEQLGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE 153
|
170 180
....*....|....*....|....*.
gi 268370067 313 KNRpdpRLQELQQEAARLKSHFQAQL 338
Cdd:COG1579 154 LEA---ELEELEAEREELAAKIPPEL 176
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
193-581 |
1.28e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 193 MKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARL--ITQQHDRAQEQSDHALMLRELQKLLQEERTQrqdlELRLEE 270
Cdd:TIGR00618 206 LTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHayLTQKREAQEEQLKKQQLLKQLRARIEELRAQ----EAVLEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 271 TREALAGRAyaadQVEGFELQTKQLTREVEELKGELQTIRDEKNRpdpRLQELQQEAARLKSHFQAQLQQEMRKTALA-E 349
Cdd:TIGR00618 282 TQERINRAR----KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRS---RAKLLMKRAAHVKQQSSIEEQRRLLQTLHSqE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 350 DQLRQQSQVEEQRVAALESQISEVSELLgTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASSRSSLDIHgdessldI 429
Cdd:TIGR00618 355 IHIRDAHEVATSIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQ-------L 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 430 NVLKDKMEKLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKatalyyqQELKQLKEEFERYKMRAQVVLKSKNTK 509
Cdd:TIGR00618 427 AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE-------QQLQTKEQIHLQETRKKAVVLARLLEL 499
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 268370067 510 DGSLGKELEAAQEQLAELKDKYISLRLSC-----EELESQHQQEAEDWKQELARLQQlHRQELERSQLDFRDRTLKL 581
Cdd:TIGR00618 500 QEEPCPLCGSCIHPNPARQDIDNPGPLTRrmqrgEQTYAQLETSEEDVYHQLTSERK-QRASLKEQMQEIQQSFSIL 575
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
191-593 |
2.22e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 191 KKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKarlitQQHDRAQEQsdhalmLRELQKLLQEERTQRQDLELRLEE 270
Cdd:pfam01576 369 KRNKANLEKAKQALESENAELQAELRTLQQAKQDSE-----HKRKKLEGQ------LQELQARLSESERQRAELAEKLSK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 271 TREALAGRAYAADQVEGfelQTKQLTREVEELKGELQTIrdeknrpdprlQELQQEAARLKSHFQAQLQQemrktaLAED 350
Cdd:pfam01576 438 LQSELESVSSLLNEAEG---KNIKLSKDVSSLESQLQDT-----------QELLQEETRQKLNLSTRLRQ------LEDE 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 351 Q--LRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKE--RLLQLDLENKTLALAASSRSsldihgdess 426
Cdd:pfam01576 498 RnsLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEgkKRLQRELEALTQQLEEKAAA---------- 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 427 ldinvlKDKMEKLKKLLQVAARKSQVTLDVEKlcdpEIMANSEAADGEKATALyyqQELKQLKEEFERYKMRAQVVLKSK 506
Cdd:pfam01576 568 ------YDKLEKTKNRLQQELDDLLVDLDHQR----QLVSNLEKKQKKFDQML---AEEKAISARYAEERDRAEAEAREK 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 507 NTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQhQQEAEDWKQELARLQQLHRQELErsqlDFRDRTLKLEEELH 586
Cdd:pfam01576 635 ETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSS-KDDVGKNVHELERSKRALEQQVE----EMKTQLEELEDELQ 709
|
....*..
gi 268370067 587 KQRDRAL 593
Cdd:pfam01576 710 ATEDAKL 716
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
324-561 |
2.60e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 324 QQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDL 403
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 404 EnktlalaassrssldihgdessldinvLKDKMEKLKKLLQVAARKSQVTldveklcDPEIMANSEAADGEKATALYYQQ 483
Cdd:COG4942 98 E---------------------------LEAQKEELAELLRALYRLGRQP-------PLALLLSPEDFLDAVRRLQYLKY 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 268370067 484 ELKQLKEEFERYKmRAQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQ 561
Cdd:COG4942 144 LAPARREQAEELR-ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
187-370 |
3.00e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 187 LADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIaetkarlitQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLEL 266
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERR---------EALQRLAEYSWDEIDVASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 267 RLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEA-ARLKSHFQAQLQQEMRKT 345
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLArLELRALLEERFAAALGDA 762
|
170 180
....*....|....*....|....*..
gi 268370067 346 ALAE--DQLRQQSQVEEQRVAALESQI 370
Cdd:COG4913 763 VERElrENLEERIDALRARLNRAEEEL 789
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
177-369 |
3.28e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 177 QEKSRMEASYLADKKKMKQDLEDANKKA--EEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDhalmlRELQKLL 254
Cdd:pfam17380 378 RELERLQMERQQKNERVRQELEAARKVKilEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERA-----REMERVR 452
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 255 QEERTQRQDLE-LRLEET---REALAGRAYAADQVEGFELQTKQLTREVEELKgelQTIRDEKNRP-------DPRLQEL 323
Cdd:pfam17380 453 LEEQERQQQVErLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEERK---QAMIEEERKRkllekemEERQKAI 529
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 268370067 324 QQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQvEEQRVAALESQ 369
Cdd:pfam17380 530 YEEERRREAEEERRKQQEMEERRRIQEQMRKATE-ERSRLEAMERE 574
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
156-569 |
3.40e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 3.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 156 KRVHQLKTQLATLTSSLATVTQEKSRMEASY-LADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAEtkarlitqqh 234
Cdd:COG4717 88 EEYAELQEELEELEEELEELEAELEELREELeKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE---------- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 235 draqeqsdhalmLRELQKLLQEERTQRQDLELRLEETREALagRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKN 314
Cdd:COG4717 158 ------------LRELEEELEELEAELAELQEELEELLEQL--SLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 315 RPDPRLQELQQEAARLKShfQAQLQQEMRKTALA------EDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQ 388
Cdd:COG4717 224 ELEEELEQLENELEAAAL--EERLKEARLLLLIAaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 389 LAIQKLKERLLQLDLENKTLalaASSRSSLDIHGDESSLDINVLKDKMEKLKKLL-QVAARKSQVTLDVEKLCDPEIMAN 467
Cdd:COG4717 302 KEAEELQALPALEELEEEEL---EELLAALGLPPDLSPEELLELLDRIEELQELLrEAEELEEELQLEELEQEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 468 SEAADGEKATALYYQ-QELKQLKEEFERYKMR-----AQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEEL 541
Cdd:COG4717 379 AGVEDEEELRAALEQaEEYQELKEELEELEEQleellGELEELLEALDEEELEEELEELEEELEELEEELEELREELAEL 458
|
410 420
....*....|....*....|....*...
gi 268370067 542 ESQHQQEAEDwkQELARLQQLHRQELER 569
Cdd:COG4717 459 EAELEQLEED--GELAELLQELEELKAE 484
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
188-565 |
3.76e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 3.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 188 ADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEE---RTQRQDL 264
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREaelEATLRTA 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 265 ELRLEETREALA-----------GRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDpRLQELQQEAARLKSH 333
Cdd:PRK02224 439 RERVEEAEALLEagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEER 517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 334 FQAQLQQ-EMRKTALAEDQLRQQSQVEeqRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAA 412
Cdd:PRK02224 518 REDLEELiAERRETIEEKRERAEELRE--RAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 413 SSRSSLDIHGDEssldINVLKDKMEKL--------KKLLQVAARKSQVTLDVEKlcdpeimANSEAADGEKATALYYQQ- 483
Cdd:PRK02224 596 TLLAAIADAEDE----IERLREKREALaelnderrERLAEKRERKRELEAEFDE-------ARIEEAREDKERAEEYLEq 664
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 484 ---ELKQLKEefERYKMRAQVvlkskntkdGSLGKELeaaqEQLAELKDKYISLRLSCEELESQHqQEAEDWKQELARLQ 560
Cdd:PRK02224 665 veeKLDELRE--ERDDLQAEI---------GAVENEL----EELEELRERREALENRVEALEALY-DEAEELESMYGDLR 728
|
....*
gi 268370067 561 QLHRQ 565
Cdd:PRK02224 729 AELRQ 733
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
204-610 |
3.79e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 204 AEEERGRLEGDLKVLQEQIAETKARL--ITQQHDRAQEQSDhalmlrELQKLLQEERTQRQDLELRLEETREALAGRAYA 281
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIerYEEQREQARETRD------EADEVLEEHEERREELETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 282 ADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHfQAQLQQEMRKTALAEDQLRQQSQVEEQ 361
Cdd:PRK02224 271 EREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDR-DEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 362 RVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALA----------ASSRSSL------DIHGDES 425
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERfgdapvdlgnAEDFLEElreerdELREREA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 426 SL--DINVLKDKMEKLKKLLQvAARKSQVTLDVEklcDPEIMANSEAADGEKATalyYQQELKQLKEEFERYKMRAQVvl 503
Cdd:PRK02224 430 ELeaTLRTARERVEEAEALLE-AGKCPECGQPVE---GSPHVETIEEDRERVEE---LEAELEDLEEEVEEVEERLER-- 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 504 kskntkdgslGKELEAAQEQLAELKDKyislRLSCEELESQHQQEAEDWKQELARLQQlHRQELERSQLDFRDRTLKLEE 583
Cdd:PRK02224 501 ----------AEDLVEAEDRIERLEER----REDLEELIAERRETIEEKRERAEELRE-RAAELEAEAEEKREAAAEAEE 565
|
410 420 430
....*....|....*....|....*....|
gi 268370067 584 ELHKQRDRALAV---LAEKDLELEQLRSVA 610
Cdd:PRK02224 566 EAEEAREEVAELnskLAELKERIESLERIR 595
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
216-606 |
4.22e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 4.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 216 KVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLEL---RLEETREALAgrayAADQVEGFELQT 292
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAasdHLNLVQTALR----QQEKIERYQEDL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 293 KQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFqAQLQQemrktALAEDQLRQ-QSQveeQRVAALES--Q 369
Cdd:COG3096 357 EELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQL-ADYQQ-----ALDVQQTRAiQYQ---QAVQALEKarA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 370 ISEVSELL-----GTYEKAKQKDQLAIQKLkerllqLDLENKtLALAASSRSSLD--------IHGD-ESSLDINVLKDK 435
Cdd:COG3096 428 LCGLPDLTpenaeDYLAAFRAKEQQATEEV------LELEQK-LSVADAARRQFEkayelvckIAGEvERSQAWQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 436 MEKLKKLLQVAARKSQVTLdveKLCDPEIMANSEAADGEKATALYYQQELK-QLKEEFERYKMRAQVvlkskntkdgslg 514
Cdd:COG3096 501 LRRYRSQQALAQRLQQLRA---QLAELEQRLRQQQNAERLLEEFCQRIGQQlDAAEELEELLAELEA------------- 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 515 kELEAAQEQLAELKDKYISLRLSCEELESQHQQ---EAEDWKQELARLQQLHRQ---ELERSQ--LDFRDRTLKLEEELH 586
Cdd:COG3096 565 -QLEELEEQAAEAVEQRSELRQQLEQLRARIKElaaRAPAWLAAQDALERLREQsgeALADSQevTAAMQQLLEREREAT 643
|
410 420
....*....|....*....|
gi 268370067 587 KQRDRALAVLAEKDLELEQL 606
Cdd:COG3096 644 VERDELAARKQALESQIERL 663
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
153-386 |
6.71e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 6.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLA-----TVTQEKSRMEAsYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKA 227
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLShsripEIQAELSKLEE-EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 228 R----------LITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLElrlEETREALAGRAYAADQVEGFELQTKQLTR 297
Cdd:TIGR02169 848 QiksiekeienLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE---AQLRELERKIEELEAQIEKKRKRLSELKA 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 298 EVEELKGELQTIRDEKNR------PDPRLQELQQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQVEEQRvAALESQIS 371
Cdd:TIGR02169 925 KLEALEEELSEIEDPKGEdeeipeEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKR-AKLEEERK 1003
|
250
....*....|....*
gi 268370067 372 EVSELLGTYEKAKQK 386
Cdd:TIGR02169 1004 AILERIEEYEKKKRE 1018
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
513-694 |
7.32e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 513 LGKELEAAQEQLAELKDKYISLRLSCEELESQHQQ----EAEDWKQELARLQ-QLHRQELERSQLDFRDRTLKL-----E 582
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLErELEERERRRARLEALLAALGLplpasA 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 583 EELHKQRDRALAVLAEKDLELEQLRSvalssglpgrrspvggvgggglgdpADTASSDSLTQALqlaaaneptfflyaEQ 662
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEALEE-------------------------ALAEAEAALRDLR--------------RE 420
|
170 180 190
....*....|....*....|....*....|..
gi 268370067 663 LARKEVEITSLRKQKHRLEVEAHQLQERLLEE 694
Cdd:COG4913 421 LRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
178-444 |
8.14e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 8.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 178 EKSRMEASYLA-DKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLitqqhdRAQEQSD-HALMLRE-LQKLL 254
Cdd:pfam15921 663 KTSRNELNSLSeDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTL------KSMEGSDgHAMKVAMgMQKQI 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 255 QEERTQRQDLELRLEETREALAGrayaADQVEGFelqtkqLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHF 334
Cdd:pfam15921 737 TAKRGQIDALQSKIQFLEEAMTN----ANKEKHF------LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 335 qAQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQIS-EVSELLGTYEKAKQKdqlaiqkLKERLLQLDLENKTLALAAS 413
Cdd:pfam15921 807 -ANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTlDVKELQGPGYTSNSS-------MKPRLLQPASFTRTHSNVPS 878
|
250 260 270
....*....|....*....|....*....|.
gi 268370067 414 SRSSLDIHGDESSLDINVLKDKMEKLKKLLQ 444
Cdd:pfam15921 879 SQSTASFLSHHSRKTNALKEDPTRDLKQLLQ 909
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
250-608 |
9.27e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 9.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 250 LQKLLQEERTQRQDL-ELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAA 328
Cdd:pfam07888 32 LQNRLEECLQERAELlQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 329 RLKSHFQAQLQQEMRKTALAEdQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTL 408
Cdd:pfam07888 112 ELSEEKDALLAQRAAHEARIR-ELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSL 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 409 AlaaSSRSSLDIHGDESSLDINVLKDKMEKLKKLLQVAARKsqvTLDVEKLCDPEIMANSEAADGEKATALyyqqelkqL 488
Cdd:pfam07888 191 S---KEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRK---EAENEALLEELRSLQERLNASERKVEG--------L 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 489 KEEferykmraqvvLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQ----ELARLQQLHR 564
Cdd:pfam07888 257 GEE-----------LSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQsaeaDKDRIEKLSA 325
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 268370067 565 --QELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRS 608
Cdd:pfam07888 326 elQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKA 371
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
161-607 |
9.36e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 9.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 161 LKTQLATLTSSLATVTQEKSRMEAsylaDKKKMKQDLEDANKKAEEERGRLEgDLKVLQEQIAETkarlitqqhdraqeQ 240
Cdd:PRK02224 204 LHERLNGLESELAELDEEIERYEE----QREQARETRDEADEVLEEHEERRE-ELETLEAEIEDL--------------R 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 241 SDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIR---------- 310
Cdd:PRK02224 265 ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaqahneea 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 311 ----DEKNRPDPRLQELQQEAARLKSHFQ-AQLQQEMRKTALAEdqLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQ 385
Cdd:PRK02224 345 eslrEDADDLEERAEELREEAAELESELEeAREAVEDRREEIEE--LEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 386 KdqlaiqkLKERLLQLDLENKTLALAASSRSSLDIHGD--------ESSLDINVLKDKMEKLKKLlqvAARKSQVTLDVE 457
Cdd:PRK02224 423 E-------LREREAELEATLRTARERVEEAEALLEAGKcpecgqpvEGSPHVETIEEDRERVEEL---EAELEDLEEEVE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 458 KLcDPEIMANSEAADGEK--------------------ATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKEL 517
Cdd:PRK02224 493 EV-EERLERAEDLVEAEDrierleerredleeliaerrETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 518 EAAQE---QLAELKDKYISLRLSCEELE--SQHQQEAEDWKQELARLQQLHRQELERSQlDFRDRTLKLE--------EE 584
Cdd:PRK02224 572 EEVAElnsKLAELKERIESLERIRTLLAaiADAEDEIERLREKREALAELNDERRERLA-EKRERKRELEaefdeariEE 650
|
490 500
....*....|....*....|...
gi 268370067 585 LHKQRDRALAVLAEKDLELEQLR 607
Cdd:PRK02224 651 AREDKERAEEYLEQVEEKLDELR 673
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
155-315 |
9.94e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 9.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 155 DKRVHQLKTQLATLTSSLATVTQEKSRmeasyLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLitqqh 234
Cdd:COG4913 667 EREIAELEAELERLDASSDDLAALEEQ-----LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL----- 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 235 DRAqeqsdhalmlrelqkllqeERTQRQDLELRLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEKN 314
Cdd:COG4913 737 EAA-------------------EDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFN 797
|
.
gi 268370067 315 R 315
Cdd:COG4913 798 R 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
128-716 |
9.94e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 9.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 128 PKSEEASGSESGVSSSSGDGPSAGSEMDKRVHQLKTQLATLTSSLATVTQEKSRMEASyLADKKKMKQDLEDANKKAEEE 207
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE-IERLEARLERLEDRRERLQQE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 208 RGRLEGDLKVLQ-EQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVE 286
Cdd:TIGR02168 423 IEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 287 GFELQTKQLTREVEELKGELQTIRDeKNRPDPRLqELQQEAArLKSHFQAQLqqeMRKTALAEDQLRQQSQVEEQRVAAL 366
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLSGILGVLSE-LISVDEGY-EAAIEAA-LGGRLQAVV---VENLNAAKKAIAFLKQNELGRVTFL 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 367 ESQISEVSELLGTYEKAKQKDQLAIQKLKErllqLDLENKTLALAASSRSSLdihgdesSLDINVLKDKMEKLKKLlqvA 446
Cdd:TIGR02168 577 PLDSIKGTEIQGNDREILKNIEGFLGVAKD----LVKFDPKLRKALSYLLGG-------VLVVDDLDNALELAKKL---R 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 447 ARKSQVTLDVEKLCDPEIMANseAADGEKATALYYQQELKQLKEEFERykmraqvvLKSKNTkdgSLGKELEAAQEQLAE 526
Cdd:TIGR02168 643 PGYRIVTLDGDLVRPGGVITG--GSAKTNSSILERRREIEELEEKIEE--------LEEKIA---ELEKALAELRKELEE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 527 LKDKYISLRLSCEELESQHQQEAEDWKQELARLQQL--HRQELERSQLDFRDRTLKLEEELHKQRDRALAVLAEKDlELE 604
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLeeRIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE-ELE 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 605 QLRSVALSSGLPGRRSPVGGVGGGGLGDPADTASSDSLTQALQLAAANEPTFFLYAEQLARKEVEITSLRKQKHRLEVEA 684
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI 868
|
570 580 590
....*....|....*....|....*....|....*
gi 268370067 685 HQLQERL---LEEGERHREEVGALQSHIEKNMRDQ 716
Cdd:TIGR02168 869 EELESELealLNERASLEEALALLRSELEELSEEL 903
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
156-400 |
1.28e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 156 KRVHQLKTQLATLTSSLATVTQEKSRMEASylaDKKKMKQDLEDANKKAEEER-GRLEGDLKVLQEQIAETKARLITQqh 234
Cdd:PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELEALKDD---NDEETRETLSTLSLRQLESRlAQTLDQLQNAQNDLAEYNSQLVSL-- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 235 draQEQSDHAlmlrelQKLLQEERTQRQDLELRLEETREalAGRAYAADQVEGFELQTKQLtreveELKGELQTIRDEKN 314
Cdd:PRK11281 155 ---QTQPERA------QAALYANSQRLQQIRNLLKGGKV--GGKALRPSQRVLLQAEQALL-----NAQNDLQRKSLEGN 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 315 RpdpRLQELQQEAARLKSHFQAQLQQEMR--KTALAEDQLRQ-QSQVEEQRVAALESQISEVSELlgtyekakqKDQLAI 391
Cdd:PRK11281 219 T---QLQDLLQKQRDYLTARIQRLEHQLQllQEAINSKRLTLsEKTVQEAQSQDEAARIQANPLV---------AQELEI 286
|
250
....*....|
gi 268370067 392 -QKLKERLLQ 400
Cdd:PRK11281 287 nLQLSQRLLK 296
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
156-557 |
1.53e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 156 KRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQdLEDANKKAEEERGRLEGDLKVLQEQIAETKA---RLITQ 232
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ-LKDNIEKKQQEINEKTTEISNTQTQLNQLKDeqnKIKKQ 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 233 QHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAADQVEGFELQTK---------QLTREVEELK 303
Cdd:TIGR04523 269 LSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQisqnnkiisQLNEQISQLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 304 GELQTIRDEKNRPDPRLQELQQEAARLKSHFQAQLQQ----EMRKTALaEDQLRQQSQVEEQRVAALESQISEVSELLGT 379
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlESQINDL-ESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 380 YEKAKQ---KDQLAIQKLKERLLQLDLENKTLalaASSRSSLDIHGDESSLDINVLKDKMEKLKK--------LLQVAAR 448
Cdd:TIGR04523 428 IERLKEtiiKNNSEIKDLTNQDSVKELIIKNL---DNTRESLETQLKVLSRSINKIKQNLEQKQKelkskekeLKKLNEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 449 KSQVTLDVEKLCD--PEIMANSEAADGEKATAlyyQQELKQLKEEFERykmraqvvLKSKNTKDGsLGKELEAAQEQLAE 526
Cdd:TIGR04523 505 KKELEEKVKDLTKkiSSLKEKIEKLESEKKEK---ESKISDLEDELNK--------DDFELKKEN-LEKEIDEKNKEIEE 572
|
410 420 430
....*....|....*....|....*....|....
gi 268370067 527 LKDKYISLRLSCEELE---SQHQQEAEDWKQELA 557
Cdd:TIGR04523 573 LKQTQKSLKKKQEEKQeliDQKEKEKKDLIKEIE 606
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
153-588 |
1.93e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLATVTQEKSRME------ASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETK 226
Cdd:TIGR00618 376 TLTQHIHTLQQQKTTLTQKLQSLCKELDILQreqatiDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 227 ARLITQQHDRAQEQSDHALMLRELQKLLQEERTQR---------QDLELRLEETREALAGRAYAAD-------QVEGFEL 290
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAvvlarllelQEEPCPLCGSCIHPNPARQDIDnpgpltrRMQRGEQ 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 291 QTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQA-------------QLQQEMRKTALAEDQLRQQSQ 357
Cdd:TIGR00618 536 TYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRskedipnlqnitvRLQDLTEKLSEAEDMLACEQH 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 358 VEEQRVAaLESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASSRSSLDIHGDESSLDINvLKDKME 437
Cdd:TIGR00618 616 ALLRKLQ-PEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQS-EKEQLT 693
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 438 KLKKLLQVAARKSQVTLDVEKLCDPEIMANSEAADGEKATALYYQQELKQLKEEFE---RYKMRAQVVLKSKN----TKD 510
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMhqaRTVLKARTEAHFNNneevTAA 773
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 268370067 511 GSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQLHRQELERSQLDFRDRTLKLEEELHKQ 588
Cdd:TIGR00618 774 LQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQL 851
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
294-604 |
1.99e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 294 QLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLkshfqaqlqQEMRKTALAEDQLRQQSQVEEQ-----RVAALES 368
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERL---------RREREKAERYQALLKEKREYEGyellkEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 369 QISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASsrssldihgDESSLDINVLKDKMEKlkkllqvaar 448
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK---------DLGEEEQLRVKEKIGE---------- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 449 ksqVTLDVEKLCDPEIMANSEAADGEKatalyyqqELKQLKEEFERYKMRAQvvlkSKNTKDGSLGKELEAAQEQLAELK 528
Cdd:TIGR02169 299 ---LEAEIASLERSIAEKERELEDAEE--------RLAKLEAEIDKLLAEIE----ELEREIEEERKRRDKLTEEYAELK 363
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 268370067 529 DKYISLRLSCEELESQHQQEAEDWKQELARLQQLHRQ--ELERSQLDFRDRTLKLEEELHKQRDrALAVLAEKDLELE 604
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREinELKRELDRLQEELQRLSEELADLNA-AIAGIEAKINELE 440
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
187-368 |
2.28e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 187 LADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLEL 266
Cdd:TIGR02169 345 IEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 267 RLEETREALAGRAYAADQVEGFELQTKQLTREVEELKGELQTIRDEK-------NRPDPRLQELQQEAARLKSHFQAqLQ 339
Cdd:TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELydlkeeyDRVEKELSKLQRELAEAEAQARA-SE 503
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 268370067 340 QEMRKTALAED-----------QLRQQSQVEEQRVAALES 368
Cdd:TIGR02169 504 ERVRGGRAVEEvlkasiqgvhgTVAQLGSVGERYATAIEV 543
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
159-241 |
2.75e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.48 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 159 HQLKTQLATLTSSLATVTQEKSRMEASYLADKKKmKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQ 238
Cdd:PRK11448 145 HALQQEVLTLKQQLELQAREKAQSQALAEAQQQE-LVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITD 223
|
...
gi 268370067 239 EQS 241
Cdd:PRK11448 224 QAA 226
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
195-386 |
3.28e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 195 QDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQhdraQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREA 274
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAK----TELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 275 lagRAYAAdqvegfelqtkqLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHF---QAQLQQEMRKTALAEDQ 351
Cdd:COG1579 89 ---KEYEA------------LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELaelEAELEEKKAELDEELAE 153
|
170 180 190
....*....|....*....|....*....|....*
gi 268370067 352 LRQQSQVEEQRVAALESQISEvsELLGTYEKAKQK 386
Cdd:COG1579 154 LEAELEELEAEREELAAKIPP--ELLALYERIRKR 186
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
177-390 |
3.34e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 177 QEKSRMEASYLADKKKMKQDLEDANKKAEEergrLEGDLKVLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKllqe 256
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNE----LQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR---- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 257 ERTQRQDLELRLE-ETREALAGRAYAADQVEGfelQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQ 335
Cdd:COG3883 98 SGGSVSYLDVLLGsESFSDFLDRLSALSKIAD---ADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 268370067 336 AQLQQemrKTALAeDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLA 390
Cdd:COG3883 175 AQQAE---QEALL-AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
290-597 |
3.82e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 290 LQTKQLTREVEELKGELQ-TIRDEKNRPDPRLQELQQEAARLKSHFQAQLQQEMRKTALAEDQLRQQSQveeQRVAALES 368
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQkTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSA---QRVELAER 882
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 369 QISEvsellgtyekaKQKDQLAIQKLKERLLQLDleNKTLALAASSRSSLdihgdesSLDINVLKDKMEKLKKLLQVAAR 448
Cdd:COG5022 883 QLQE-----------LKIDVKSISSLKLVNLELE--SEIIELKKSLSSDL-------IENLEFKTELIARLKKLLNNIDL 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 449 KSQVTLDVEKLcDPEIMANSEAADGEKATALYYQqELKQLKEEFERY-KMRAQvvLKSKNTKDGSLGKELEAAQEQLAEL 527
Cdd:COG5022 943 EEGPSIEYVKL-PELNKLHEVESKLKETSEEYED-LLKKSTILVREGnKANSE--LKNFKKELAELSKQYGALQESTKQL 1018
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 268370067 528 KDK-YISLRLSCEELESQHQQEAEDWKQELARLQQLHrqELERSQLDFRDRTLKLEEELHKQRDRALAVLA 597
Cdd:COG5022 1019 KELpVEVAELQSASKIISSESTELSILKPLQKLKGLL--LLENNQLQARYKALKLRRENSLLDDKQLYQLE 1087
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
153-329 |
4.36e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 153 EMDKRVHQLKTQLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLitq 232
Cdd:COG4913 299 ELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL--- 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 233 qhdrAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALagrayaadqvegfelqtKQLTREVEELKGELQTIRDE 312
Cdd:COG4913 376 ----PASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL-----------------RDLRRELRELEAEIASLERR 434
|
170
....*....|....*..
gi 268370067 313 KNRPDPRLQELQQEAAR 329
Cdd:COG4913 435 KSNIPARLLALRDALAE 451
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
194-524 |
5.61e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 194 KQDLEDANKKAEEERGRLEGdlkvLQEQIAETKARL--ITQQHDRAQEQsdhalmLRELQKLLQEERT---QRQDLELRL 268
Cdd:COG3096 353 QEDLEELTERLEEQEEVVEE----AAEQLAEAEARLeaAEEEVDSLKSQ------LADYQQALDVQQTraiQYQQAVQAL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 269 EETREALAGRAYAADQVEG----FELQTKQLTREVEELKGELQTIRDEKNRPDPRLQELQQ---EAARLKSHFQAQlqqe 341
Cdd:COG3096 423 EKARALCGLPDLTPENAEDylaaFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiagEVERSQAWQTAR---- 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 342 mrktALAEDQLRQQSQVeeQRVAALESQISEVSELLGTYEKA-KQKDQLAIQKLKERLLQLDLENKTLALAAsSRSSLDI 420
Cdd:COG3096 499 ----ELLRRYRSQQALA--QRLQQLRAQLAELEQRLRQQQNAeRLLEEFCQRIGQQLDAAEELEELLAELEA-QLEELEE 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 421 HGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLD----VEKLCDP--EIMANSEAADGEKATALYYQQELKQLKEEFER 494
Cdd:COG3096 572 QAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAaqdaLERLREQsgEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
330 340 350
....*....|....*....|....*....|
gi 268370067 495 YKMRAQVVLKSKNTKDGSLGKELEAAQEQL 524
Cdd:COG3096 652 RKQALESQIERLSQPGGAEDPRLLALAERL 681
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
156-611 |
5.89e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 156 KRVHQLKTQLATLTSSLATVTQEKSRM----EASYLADKKKMKQDLEDANKKAEEERGRLE---GDLKVLQEQIAETKAR 228
Cdd:pfam12128 383 KIKEQNNRDIAGIKDKLAKIREARDRQlavaEDDLQALESELREQLEAGKLEFNEEEYRLKsrlGELKLRLNQATATPEL 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 229 LITQQH-----DRAQE--------QSDHALMLRELQKLLQEERTQRQDLELRLEETREALAG------------RAYAAD 283
Cdd:pfam12128 463 LLQLENfderiERAREeqeaanaeVERLQSELRQARKRRDQASEALRQASRRLEERQSALDElelqlfpqagtlLHFLRK 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 284 QVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPR-LQELQQEAARLKSHFQAQLQQEMRKTAlaeDQLRQQSQVEEQR 362
Cdd:pfam12128 543 EAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELnLYGVKLDLKRIDVPEWAASEEELRERL---DKAEEALQSAREK 619
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 363 VAALESQISEVSELLGTYEKAKQKDQLAIQKLKERLLQLDLENKTLALAASsrSSLDIHGDESSLDINVLKDKMEKLKKL 442
Cdd:pfam12128 620 QAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKN--KALAERKDSANERLNSLEAQLKQLDKK 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 443 LQVA------------ARKSQVTLDVEKLCDPEIMANSEAADGEKATAlyyQQELKQLKEEFERyKMRAQVVLKSKNTKD 510
Cdd:pfam12128 698 HQAWleeqkeqkrearTEKQAYWQVVEGALDAQLALLKAAIAARRSGA---KAELKALETWYKR-DLASLGVDPDVIAKL 773
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 511 GSLGKELEAAQEQLAELKDKYISLRLSCEELESQHQQEAEDWKQELARLQQLHRQELERSQLDFRDRTLKLEEELH---K 587
Cdd:pfam12128 774 KREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKaseK 853
|
490 500
....*....|....*....|....
gi 268370067 588 QRDRALAVLAEKDLELEQLRSVAL 611
Cdd:pfam12128 854 QQVRLSENLRGLRCEMSKLATLKE 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
471-697 |
6.07e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 471 ADGEKATALYYQQELKQLKEEFERYkmraQVVLKSKNTKDGSLGKELEAAQEQLAELKDKYISLRLSCEELesqhQQEAE 550
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEEL----QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL----QKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 551 DWKQELARLQ---QLHRQELERSQLDFRDRTLKLEEELhKQRDRALAVLAEKDLELEQLRSVALSSglpgrrsPVGGVGG 627
Cdd:TIGR02168 292 ALANEISRLEqqkQILRERLANLERQLEELEAQLEELE-SKLDELAEELAELEEKLEELKEELESL-------EAELEEL 363
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 628 GGLGDPADTASSDSLTQALQLAAAneptFFLYAEQLARKEVEITSLRKQKHRLEVEAHQLQERLLEEGER 697
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSK----VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKK 429
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
163-537 |
6.19e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 163 TQLATLTSSLATVTQE----KSRMEASYLADKKKMKQDLEDANKKAEEERGRLEGDLKVlqEQIAETKARLITQQHDRAQ 238
Cdd:COG3206 71 SGLSSLSASDSPLETQieilKSRPVLERVVDKLNLDEDPLGEEASREAAIERLRKNLTV--EPVKGSNVIEISYTSPDPE 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 239 EQsdhALMLRELQKLLQEERtqrqdLELRLEETREALagrayaadqvEGFELQTKQLTREVEELKGELQTIRDEKNRPDP 318
Cdd:COG3206 149 LA---AAVANALAEAYLEQN-----LELRREEARKAL----------EFLEEQLPELRKELEEAEAALEEFRQKNGLVDL 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 319 RlQELQQEAARLkshfqAQLQQEMRktalaedQLRQQSQVEEQRVAALESQISEVSELLgtyekAKQKDQLAIQKLKERL 398
Cdd:COG3206 211 S-EEAKLLLQQL-----SELESQLA-------EARAELAEAEARLAALRAQLGSGPDAL-----PELLQSPVIQQLRAQL 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 399 LQLDLEnktlalaassRSSLDIHGDESSLDINVLKDKMEKLKKLLQVAARKSQVTLDVEklcdpeimanseaADGEKATA 478
Cdd:COG3206 273 AELEAE----------LAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE-------------LEALQARE 329
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 268370067 479 LYYQQELKQLKEEFERYKmRAQVVLKSkntkdgsLGKELEAAQEQLAELKDKYISLRLS 537
Cdd:COG3206 330 ASLQAQLAQLEARLAELP-ELEAELRR-------LEREVEVARELYESLLQRLEEARLA 380
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
256-716 |
6.58e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 6.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 256 EERTQRQDLELRLEEtREALAGRAYAADQVEGFELQTKQLtrevEELKGELQTIRDEKNRPDPRLQELQQEAARLKSHFQ 335
Cdd:pfam12128 215 KSRLNRQQVEHWIRD-IQAIAGIMKIRPEFTKLQQEFNTL----ESAELRLSHLHFGYKSDETLIASRQEERQETSAELN 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 336 AQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQISEVSELLGTYEKAKQkDQLAIQKLKERLLQLDLENKTLALAASSR 415
Cdd:pfam12128 290 QLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADI-ETAAADQEQLPSWQSELENLEERLKALTG 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 416 SSLDIH----------GDESSLDINVLKDKMEKLK--KLLQVAARKSqvtlDVEKLCDP----EIMANSEAADGEKATAL 479
Cdd:pfam12128 369 KHQDVTakynrrrskiKEQNNRDIAGIKDKLAKIReaRDRQLAVAED----DLQALESElreqLEAGKLEFNEEEYRLKS 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 480 ------------YYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQ----EQLAELKDKYISLRLSCEELES 543
Cdd:pfam12128 445 rlgelklrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARkrrdQASEALRQASRRLEERQSALDE 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 544 QHQQ--------------EAEDWKQELARL---QQLHRQELE--------RSQLDFRDRTLKLEE------ELHKQRDRA 592
Cdd:pfam12128 525 LELQlfpqagtllhflrkEAPDWEQSIGKVispELLHRTDLDpevwdgsvGGELNLYGVKLDLKRidvpewAASEEELRE 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 593 LAVLAEKDLELEQLRSVALSSGLpgrrspvggVGGGGLGDPADTASSDSLtQALQLAAANEPTFFLYAEQLARK------ 666
Cdd:pfam12128 605 RLDKAEEALQSAREKQAAAEEQL---------VQANGELEKASREETFAR-TALKNARLDLRRLFDEKQSEKDKknkala 674
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 268370067 667 ------EVEITSLRKQKHRLEVEAHQLQERLLEEGERHREEVGALQSHIEKNMRDQ 716
Cdd:pfam12128 675 erkdsaNERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQ 730
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
458-569 |
6.68e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 458 KLCDPEIMANSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLGKELEAAQEQL----AELKDKYIS 533
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLdrklELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|....*.
gi 268370067 534 LRLSCEELESQhQQEAEDWKQELARLQQLHRQELER 569
Cdd:PRK12704 112 LEKKEKELEQK-QQELEKKEEELEELIEEQLQELER 146
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
154-600 |
6.71e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 154 MDKRVHQLKTQLATLTSSLATVTQEKSRMEASY------LADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKA 227
Cdd:pfam01576 157 LEERISEFTSNLAEEEEKAKSLSKLKNKHEAMIsdleerLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 228 RLITQQHDRA-------QEQSDHALMLR----------ELQKLLQEERTQRQDLELR---LEETREALAGR------AYA 281
Cdd:pfam01576 237 QLAKKEEELQaalarleEETAQKNNALKkireleaqisELQEDLESERAARNKAEKQrrdLGEELEALKTEledtldTTA 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 282 ADQvegfELQTKQlTREVEELKgelQTIRDEKNRPDPRLQELQQEAARLKSHFQAQLQQEMR--------KTALAEDQ-- 351
Cdd:pfam01576 317 AQQ----ELRSKR-EQEVTELK---KALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRnkanlekaKQALESENae 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 352 -------LRQQSQVEEQRVAALESQISEVSELLGTYEKAKQKDQLAIQKlkerlLQLDLENKTLALAASSRSSLDIHGDE 424
Cdd:pfam01576 389 lqaelrtLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSK-----LQSELESVSSLLNEAEGKNIKLSKDV 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 425 SSLDiNVLKDKMEKL----KKLLQVAARKSQvtLDVEKLCDPEIMANSEAADGEKATALY-YQQELKQLKEEFERYKMRA 499
Cdd:pfam01576 464 SSLE-SQLQDTQELLqeetRQKLNLSTRLRQ--LEDERNSLQEQLEEEEEAKRNVERQLStLQAQLSDMKKKLEEDAGTL 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 500 QVVLKSKNtkdgSLGKELEAAQEQLAELKDKYISLrlscEELESQHQQEAEDWKQELARLQQLhRQELERSQLDFrDRTL 579
Cdd:pfam01576 541 EALEEGKK----RLQRELEALTQQLEEKAAAYDKL----EKTKNRLQQELDDLLVDLDHQRQL-VSNLEKKQKKF-DQML 610
|
490 500
....*....|....*....|....*
gi 268370067 580 KLEEELHKQ----RDRALAVLAEKD 600
Cdd:pfam01576 611 AEEKAISARyaeeRDRAEAEAREKE 635
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-724 |
6.84e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 6.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 160 QLKTQLATLTSSLATVTQEKSRMEASyLADKKKMKQDLEDANKKAEEERGRLEGDLKVLQEQIAETKARLITQQHDRAQE 239
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAE-LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 240 QSDHALMLRELQKLLQE-ERTQRQDLELRLEETREALAGrayAADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDP 318
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEE---LQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 319 RLQELQQEAARLKSHFQ--AQLQQEMRKTALAEDQLRQQSQVEEQRVAALE----------------------------- 367
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqavvvenlnaakkaiaflkqne 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 368 ---SQISEVSELLGTYEKAKQKDQLA------------------IQKLKERLLQLDLENKTLALAASSRSSLDIHG---- 422
Cdd:TIGR02168 570 lgrVTFLPLDSIKGTEIQGNDREILKniegflgvakdlvkfdpkLRKALSYLLGGVLVVDDLDNALELAKKLRPGYrivt 649
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 423 ------------------------------DESSLDINVLKDKMEKLKKLLQVAARK-SQVTLDVEKLCDPEIMANSEAA 471
Cdd:TIGR02168 650 ldgdlvrpggvitggsaktnssilerrreiEELEEKIEELEEKIAELEKALAELRKElEELEEELEQLRKELEELSRQIS 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 472 DGEK------ATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGSLG---KELEAAQEQLAELKDKYISLRLSCEELE 542
Cdd:TIGR02168 730 ALRKdlarleAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeAEIEELEAQIEQLKEELKALREALDELR 809
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 543 SQHQQEAEDWKQELARLQQLHRQelersqldfRDRTLKLEEELHKQRDRALAVLAEKDLELEQLRSV--ALSSGLPGrrs 620
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERR---------IAATERRLEDLEEQIEELSEDIESLAAEIEELEELieELESELEA--- 877
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 621 pvGGVGGGGLGDPADTASSDSLTQALQLAAANEPTFFLYAEQLARKEvEITSLRKQKHRLEVEAHQLQERLLEEGERHRE 700
Cdd:TIGR02168 878 --LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE-KLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954
|
650 660
....*....|....*....|....
gi 268370067 701 EVGALQSHIEKNMRDQSREGANLE 724
Cdd:TIGR02168 955 EAEALENKIEDDEEEARRRLKRLE 978
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
281-419 |
7.11e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 39.45 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 281 AADQVEGFELQTKQLTREVEELKGELQTIRDEKNRPDPRLQ-ELQQEaarLKSHFQAQLQQEMRKTALAEDQLRQQS-QV 358
Cdd:COG3524 175 REDAVRFAEEEVERAEERLRDAREALLAFRNRNGILDPEATaEALLQ---LIATLEGQLAELEAELAALRSYLSPNSpQV 251
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 268370067 359 E--EQRVAALESQISEVSELLGTyekAKQKDQLAIQKLKERLLQLDLENKTLALaASSRSSLD 419
Cdd:COG3524 252 RqlRRRIAALEKQIAAERARLTG---ASGGDSLASLLAEYERLELEREFAEKAY-TSALAALE 310
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
299-401 |
7.34e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 299 VEELKGELQTIRDEKnrpdprLQELQQEAARLKSHFQ-------AQLQQEMRKTALAEDQLRQQSQVEEQRVAALESQIS 371
Cdd:PRK12704 44 LEEAKKEAEAIKKEA------LLEAKEEIHKLRNEFEkelrerrNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEK 117
|
90 100 110
....*....|....*....|....*....|
gi 268370067 372 EVSELLGTYEKAKQKDQLAIQKLKERLLQL 401
Cdd:PRK12704 118 ELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
293-377 |
8.77e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.68 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 268370067 293 KQLTREVEELKGELQTIRDEKNRPD-PRLQELQQEAARLKSHFQAQLQQ-EMRKTALAEDQ-LRQQSQVEEQRVAALESQ 369
Cdd:COG0542 414 DELERRLEQLEIEKEALKKEQDEASfERLAELRDELAELEEELEALKARwEAEKELIEEIQeLKEELEQRYGKIPELEKE 493
|
....*...
gi 268370067 370 ISEVSELL 377
Cdd:COG0542 494 LAELEEEL 501
|
|
| |
