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Conserved domains on  [gi|259089421|ref|NP_083503|]
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TOMM20-like protein 1 [Mus musculus]

Protein Classification

Tom20 family protein( domain architecture ID 10489121)

Tom20 family protein similar to mitochondrial import receptor subunit TOM20 homolog, a central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MAS20 pfam02064
MAS20 protein import receptor;
24-128 2.16e-35

MAS20 protein import receptor;


:

Pssm-ID: 460434  Cd Length: 132  Bit Score: 119.21  E-value: 2.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259089421   24 SYCVYLDWRRHRDPAFRRRLQDKRRAGQPKA-------QAPARQLWD-----------PVKKEELQEYFFREVQMGKLCL 85
Cdd:pfam02064  10 GYCIYFDYKRRSDPEFRKKLRKRRRKQAKAAkeeaeaaKAAQRQAIKkaleeakeepfPTDPEEKEAYFLQEVQLGEELL 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 259089421   86 IRGERGMGFEHLTNALLVCEQPKELLMFFKKTLPPEVFQMLLD 128
Cdd:pfam02064  90 AQGDYEEAALHFYNALKVYPQPQELLQIYQKTLPPPVFEMLVE 132
 
Name Accession Description Interval E-value
MAS20 pfam02064
MAS20 protein import receptor;
24-128 2.16e-35

MAS20 protein import receptor;


Pssm-ID: 460434  Cd Length: 132  Bit Score: 119.21  E-value: 2.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259089421   24 SYCVYLDWRRHRDPAFRRRLQDKRRAGQPKA-------QAPARQLWD-----------PVKKEELQEYFFREVQMGKLCL 85
Cdd:pfam02064  10 GYCIYFDYKRRSDPEFRKKLRKRRRKQAKAAkeeaeaaKAAQRQAIKkaleeakeepfPTDPEEKEAYFLQEVQLGEELL 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 259089421   86 IRGERGMGFEHLTNALLVCEQPKELLMFFKKTLPPEVFQMLLD 128
Cdd:pfam02064  90 AQGDYEEAALHFYNALKVYPQPQELLQIYQKTLPPPVFEMLVE 132
3a0801s04tom TIGR00985
mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit; [Transport ...
 25-131 5.75e-19

mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273378  Cd Length: 148  Bit Score: 77.65  E-value: 5.75e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259089421   25 YCVYLDWRRHRDPAFRRRLQDKRRA-----------GQPKAQAPARQLWDPVKK-------EELQEYFFREVQMGKLCLI 86
Cdd:TIGR00985  23 YAIYFDYKRRNDPDFRKKLRRRRKKqagaekqygglAKEKQRQRIRPAAAGLAKapdptdpSEKEAFFLQEVQLGEELMA 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 259089421   87 RGERGM-GFEHLTNALLVCEQPKELLMFFKKTLPPEVFQMLLDKIP 131
Cdd:TIGR00985 103 QGTNVDeGAVHFYNALKVYPQPQQLLSIYQQTLPEPIFRLMIAQLP 148
 
Name Accession Description Interval E-value
MAS20 pfam02064
MAS20 protein import receptor;
24-128 2.16e-35

MAS20 protein import receptor;


Pssm-ID: 460434  Cd Length: 132  Bit Score: 119.21  E-value: 2.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259089421   24 SYCVYLDWRRHRDPAFRRRLQDKRRAGQPKA-------QAPARQLWD-----------PVKKEELQEYFFREVQMGKLCL 85
Cdd:pfam02064  10 GYCIYFDYKRRSDPEFRKKLRKRRRKQAKAAkeeaeaaKAAQRQAIKkaleeakeepfPTDPEEKEAYFLQEVQLGEELL 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 259089421   86 IRGERGMGFEHLTNALLVCEQPKELLMFFKKTLPPEVFQMLLD 128
Cdd:pfam02064  90 AQGDYEEAALHFYNALKVYPQPQELLQIYQKTLPPPVFEMLVE 132
3a0801s04tom TIGR00985
mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit; [Transport ...
 25-131 5.75e-19

mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273378  Cd Length: 148  Bit Score: 77.65  E-value: 5.75e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 259089421   25 YCVYLDWRRHRDPAFRRRLQDKRRA-----------GQPKAQAPARQLWDPVKK-------EELQEYFFREVQMGKLCLI 86
Cdd:TIGR00985  23 YAIYFDYKRRNDPDFRKKLRRRRKKqagaekqygglAKEKQRQRIRPAAAGLAKapdptdpSEKEAFFLQEVQLGEELMA 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 259089421   87 RGERGM-GFEHLTNALLVCEQPKELLMFFKKTLPPEVFQMLLDKIP 131
Cdd:TIGR00985 103 QGTNVDeGAVHFYNALKVYPQPQQLLSIYQQTLPEPIFRLMIAQLP 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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