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Conserved domains on  [gi|28144918|ref|NP_112537|]
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GTPase IMAP family member 3 [Mus musculus]

Protein Classification

GTPase IMAP family protein( domain architecture ID 10111261)

GTPase immunity-associated protein (IMAP) family protein may function as regulator of lymphocyte survival and homeostasis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AIG1 cd01852
AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 ...
 23-223 3.38e-101

AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).


:

Pssm-ID: 206651 [Multi-domain]  Cd Length: 201  Bit Score: 294.83  E-value: 3.38e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLC 102
Cdd:cd01852   1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIIRCLSLS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918 103 APGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDnRSLRSLVQECGRRYCAF 182
Cdd:cd01852  81 APGPHAFLLVVPLGRFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDDLEGGSLEDYLEDSC-EALKRLLEKCGGRYVAF 159

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 28144918 183 NNRASGEEQQGQLAELMALVRRLEQECEGSFHSNDLFLHAE 223
Cdd:cd01852 160 NNKAKGREQEQQVKELLAKVEEMVRENGGKPYTNEMYEEAE 200
 
Name Accession Description Interval E-value
AIG1 cd01852
AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 ...
 23-223 3.38e-101

AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).


Pssm-ID: 206651 [Multi-domain]  Cd Length: 201  Bit Score: 294.83  E-value: 3.38e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLC 102
Cdd:cd01852   1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIIRCLSLS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918 103 APGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDnRSLRSLVQECGRRYCAF 182
Cdd:cd01852  81 APGPHAFLLVVPLGRFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDDLEGGSLEDYLEDSC-EALKRLLEKCGGRYVAF 159

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 28144918 183 NNRASGEEQQGQLAELMALVRRLEQECEGSFHSNDLFLHAE 223
Cdd:cd01852 160 NNKAKGREQEQQVKELLAKVEEMVRENGGKPYTNEMYEEAE 200
AIG1 pfam04548
AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
 23-227 1.04e-95

AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.


Pssm-ID: 398307 [Multi-domain]  Cd Length: 200  Bit Score: 280.65  E-value: 1.04e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918    23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLC 102
Cdd:pfam04548   1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSNDFISKEIIRCLLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918   103 APGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQEcgrrycaf 182
Cdd:pfam04548  81 EPGPHAVLLVLSLGRFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDSLDDYLSDGCPEFLKEVLRT-------- 152

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 28144918   183 nnrASGEEQQGQLAELMALVRRLEQECEGSFHSNDLFLHAETLLR 227
Cdd:pfam04548 153 ---ADGEEKEEQVQQLLALVEAIVKENGGKPYTNDLYEKIKEEGE 194
3a0901s04IAP86 TIGR00993
chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K ...
 23-146 1.13e-07

chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273381 [Multi-domain]  Cd Length: 763  Bit Score: 53.03  E-value: 1.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918    23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAEtGTWEGRSILVVDTPPIFES---KAQNQDMDKDIGDCY 99
Cdd:TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-GLVQGVKIRVIDTPGLKSSasdQSKNEKILSSVKKFI 197

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 28144918   100 LLCApgPHVLLLVTQLGRFTAE--DVMAVRMVKEVFGVGVMRHMIVLFT 146
Cdd:TIGR00993 198 KKNP--PDIVLYVDRLDMQTRDsnDLPLLRTITDVLGPSIWFNAIVTLT 244
YeeP COG3596
Predicted GTPase [General function prediction only];
20-174 3.06e-06

Predicted GTPase [General function prediction only];


Pssm-ID: 442815 [Multi-domain]  Cd Length: 318  Bit Score: 47.84  E-value: 3.06e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  20 SRPLRILLVGKSGCGKSATGNSLLRRPAFE-SRLRGqsVTRTSQAET-GTWEGRSILVVDTPPIFESkaqNQDMDKDIGd 97
Cdd:COG3596  37 LPPPVIALVGKTGAGKSSLINALFGAEVAEvGVGRP--CTREIQRYRlESDGLPGLVLLDTPGLGEV---NERDREYRE- 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  98 cYLLCAPGPHVLLLVTQ-LGRFTAEDVMAVRMVKEVFgvgVMRHMIVLFTRKeDLAEKSLE-----EFVTHTDNRSLRSL 171
Cdd:COG3596 111 -LRELLPEADLILWVVKaDDRALATDEEFLQALRAQY---PDPPVLVVLTQV-DRLEPEREwdppyNWPSPPKEQNIRRA 185


                ...
gi 28144918 172 VQE 174
Cdd:COG3596 186 LEA 188
 
Name Accession Description Interval E-value
AIG1 cd01852
AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 ...
 23-223 3.38e-101

AvrRpt2-Induced Gene 1 (AIG1); This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).


Pssm-ID: 206651 [Multi-domain]  Cd Length: 201  Bit Score: 294.83  E-value: 3.38e-101
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLC 102
Cdd:cd01852   1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIIRCLSLS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918 103 APGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDnRSLRSLVQECGRRYCAF 182
Cdd:cd01852  81 APGPHAFLLVVPLGRFTEEEEQAVEELQELFGEKVLDHTIVLFTRGDDLEGGSLEDYLEDSC-EALKRLLEKCGGRYVAF 159

                       170       180       190       200
                ....*....|....*....|....*....|....*....|.
gi 28144918 183 NNRASGEEQQGQLAELMALVRRLEQECEGSFHSNDLFLHAE 223
Cdd:cd01852 160 NNKAKGREQEQQVKELLAKVEEMVRENGGKPYTNEMYEEAE 200
AIG1 pfam04548
AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
 23-227 1.04e-95

AIG1 family; Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.


Pssm-ID: 398307 [Multi-domain]  Cd Length: 200  Bit Score: 280.65  E-value: 1.04e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918    23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLC 102
Cdd:pfam04548   1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSNDFISKEIIRCLLLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918   103 APGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQEcgrrycaf 182
Cdd:pfam04548  81 EPGPHAVLLVLSLGRFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDDSLDDYLSDGCPEFLKEVLRT-------- 152

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 28144918   183 nnrASGEEQQGQLAELMALVRRLEQECEGSFHSNDLFLHAETLLR 227
Cdd:pfam04548 153 ---ADGEEKEEQVQQLLALVEAIVKENGGKPYTNDLYEKIKEEGE 194
Toc34_like cd01853
Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like); The Toc34-like ...
 22-146 3.96e-12

Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like); The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.


Pssm-ID: 206652  Cd Length: 248  Bit Score: 64.65  E-value: 3.96e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  22 PLRILLVGKSGCGKSATGNSLLrrpafesrlrGQSVTRTS--QAET-------GTWEGRSILVVDTPPIFESKAQNQDmD 92
Cdd:cd01853  31 SLTILVLGKTGVGKSSTINSIF----------GERKVSVSafQSETlrprevsRTVDGFKLNIIDTPGLLESQDQRVN-R 99

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 28144918  93 K--DIGDCYLLCAPgPHVLLLVTQLG--RFTAEDVMAVRMVKEVFGVGVMRHMIVLFT 146
Cdd:cd01853 100 KilSIIKRFLKKKT-IDVVLYVDRLDmyRVDNLDVPLLRAITDSFGPSIWRNAIVVLT 156
3a0901s04IAP86 TIGR00993
chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K ...
 23-146 1.13e-07

chloroplast protein import component Toc86/159, G and M domains; The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273381 [Multi-domain]  Cd Length: 763  Bit Score: 53.03  E-value: 1.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918    23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAEtGTWEGRSILVVDTPPIFES---KAQNQDMDKDIGDCY 99
Cdd:TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-GLVQGVKIRVIDTPGLKSSasdQSKNEKILSSVKKFI 197

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 28144918   100 LLCApgPHVLLLVTQLGRFTAE--DVMAVRMVKEVFGVGVMRHMIVLFT 146
Cdd:TIGR00993 198 KKNP--PDIVLYVDRLDMQTRDsnDLPLLRTITDVLGPSIWFNAIVTLT 244
MMR_HSR1 pfam01926
50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete ...
 24-147 1.43e-07

50S ribosome-binding GTPase; The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide.


Pssm-ID: 460387 [Multi-domain]  Cd Length: 113  Bit Score: 49.15  E-value: 1.43e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918    24 RILLVGKSGCGKSATGNSLLRRPAFESRLRGqsVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKD---IGDCYL 100
Cdd:pfam01926   1 RVALVGRPNVGKSTLINALTGAKAIVSDYPG--TTRDPNEGRLELKGKQIILVDTPGLIEGASEGEGLGRAflaIIEADL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 28144918   101 lcapgphVLLLVTQLGRFTAEDVMAVRMVKEvfgvgVMRHMIVLFTR 147
Cdd:pfam01926  79 -------ILFVVDSEEGITPLDEELLELLRE-----NKKPIILVLNK 113
Ras_like_GTPase cd00882
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ...
 26-160 2.23e-06

Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.


Pssm-ID: 206648 [Multi-domain]  Cd Length: 161  Bit Score: 46.68  E-value: 2.23e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  26 LLVGKSGCGKSATGNSLLRRPAFE-SRLRGqsVTRTSQAETGTWE--GRSILVVDTPPIFESKaqnqdmDKDIGDCYLLC 102
Cdd:cd00882   1 VVVGRGGVGKSSLLNALLGGEVGEvSDVPG--TTRDPDVYVKELDkgKVKLVLVDTPGLDEFG------GLGREELARLL 72

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 28144918 103 APGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVmrHMIVLFTRKEDLAEKSLEEFV 160
Cdd:cd00882  73 LRGADLILLVVDSTDRESEEDAKLLILRRLRKEGI--PIILVGNKIDLLEEREVEELL 128
YeeP COG3596
Predicted GTPase [General function prediction only];
20-174 3.06e-06

Predicted GTPase [General function prediction only];


Pssm-ID: 442815 [Multi-domain]  Cd Length: 318  Bit Score: 47.84  E-value: 3.06e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  20 SRPLRILLVGKSGCGKSATGNSLLRRPAFE-SRLRGqsVTRTSQAET-GTWEGRSILVVDTPPIFESkaqNQDMDKDIGd 97
Cdd:COG3596  37 LPPPVIALVGKTGAGKSSLINALFGAEVAEvGVGRP--CTREIQRYRlESDGLPGLVLLDTPGLGEV---NERDREYRE- 110

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918  98 cYLLCAPGPHVLLLVTQ-LGRFTAEDVMAVRMVKEVFgvgVMRHMIVLFTRKeDLAEKSLE-----EFVTHTDNRSLRSL 171
Cdd:COG3596 111 -LRELLPEADLILWVVKaDDRALATDEEFLQALRAQY---PDPPVLVVLTQV-DRLEPEREwdppyNWPSPPKEQNIRRA 185


                ...
gi 28144918 172 VQE 174
Cdd:COG3596 186 LEA 188
3a0901s02IAP34 TIGR00991
GTP-binding protein (Chloroplast Envelope Protein Translocase); [Transport and binding ...
 23-169 4.21e-06

GTP-binding protein (Chloroplast Envelope Protein Translocase); [Transport and binding proteins, Nucleosides, purines and pyrimidines]


Pssm-ID: 130064  Cd Length: 313  Bit Score: 47.59  E-value: 4.21e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28144918    23 LRILLVGKSGCGKSATGNSLLRR-----PAFESR-LRGQSVTRTSQaetgtweGRSILVVDTPPIFESKAQNqDMDKDIG 96
Cdd:TIGR00991  39 LTILVMGKGGVGKSSTVNSIIGEriatvSAFQSEgLRPMMVSRTRA-------GFTLNIIDTPGLIEGGYIN-DQAVNII 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28144918    97 DCYLLcAPGPHVLLLVTQLGRFTAEDV--MAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLE--EFVTHTDNRSLR 169
Cdd:TIGR00991 111 KRFLL-GKTIDVLLYVDRLDAYRVDTLdgQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEynDFFSKRSEALLR 186
AppF COG4608
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ...
 27-64 6.61e-04

ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443658 [Multi-domain]  Cd Length: 329  Bit Score: 40.87  E-value: 6.61e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 28144918  27 LVGKSGCGKSATGNSLLR--RP-AFESRLRGQSVTRTSQAE 64
Cdd:COG4608  49 LVGESGCGKSTLGRLLLRleEPtSGEILFDGQDITGLSGRE 89
DppD COG0444
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ...
 27-64 9.03e-04

ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440213 [Multi-domain]  Cd Length: 320  Bit Score: 40.42  E-value: 9.03e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 28144918  27 LVGKSGCGKSATGNSLLR---RPAFES---RLRGQSVTRTSQAE 64
Cdd:COG0444  36 LVGESGSGKSTLARAILGllpPPGITSgeiLFDGEDLLKLSEKE 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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